RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 USP21Q9UK80 565 aa27.01■■□□□ 1.91
CLSTN3-214ENST00000542663 EP400Q96L91 3159 aa27.01■■□□□ 1.91
CLSTN3-214ENST00000542663 MYOM2P54296 1465 aa27■■□□□ 1.91
CLSTN3-214ENST00000542663 PXDNQ92626 1479 aa27■■□□□ 1.91
CLSTN3-214ENST00000542663 ATRNO75882 1429 aa26.99■■□□□ 1.91
CLSTN3-214ENST00000542663 FNBP4Q8N3X1 1017 aaPredicted RBP26.99■■□□□ 1.91
CLSTN3-214ENST00000542663 KNDC1Q76NI1 1749 aa26.98■■□□□ 1.91
CLSTN3-214ENST00000542663 ATAD2Q6PL18 1390 aa26.97■■□□□ 1.91
CLSTN3-214ENST00000542663 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.96■■□□□ 1.91
CLSTN3-214ENST00000542663 TRPC5Q9UL62 973 aaPredicted RBP26.96■■□□□ 1.91
CLSTN3-214ENST00000542663 SRCAPQ6ZRS2 3230 aa26.95■■□□□ 1.9
CLSTN3-214ENST00000542663 FMN2Q9NZ56 1722 aa26.94■■□□□ 1.9
CLSTN3-214ENST00000542663 SLC4A1APQ9BWU0 796 aaKnown RBP26.94■■□□□ 1.9
CLSTN3-214ENST00000542663 BCL9LQ86UU0 1499 aa26.93■■□□□ 1.9
CLSTN3-214ENST00000542663 RGPD8O14715 1765 aaPredicted RBP26.93■■□□□ 1.9
CLSTN3-214ENST00000542663 NPHP3Q7Z494 1330 aa26.92■■□□□ 1.9
CLSTN3-214ENST00000542663 ESCO1Q5FWF5 840 aa26.92■■□□□ 1.9
CLSTN3-214ENST00000542663 TECPR2O15040 1411 aa26.9■■□□□ 1.9
CLSTN3-214ENST00000542663 ADGRF5Q8IZF2 1346 aa26.9■■□□□ 1.9
CLSTN3-214ENST00000542663 BRWD3Q6RI45 1802 aa26.88■■□□□ 1.89
CLSTN3-214ENST00000542663 XPCQ01831 940 aaPredicted RBP26.88■■□□□ 1.89
CLSTN3-214ENST00000542663 FOXD1Q16676 465 aa26.88■■□□□ 1.89
CLSTN3-214ENST00000542663 KIF1AQ12756 1690 aa26.88■■□□□ 1.89
CLSTN3-214ENST00000542663 FOXO3O43524 673 aa26.87■■□□□ 1.89
CLSTN3-214ENST00000542663 SPATA31E1Q6ZUB1 1445 aa26.87■■□□□ 1.89
CLSTN3-214ENST00000542663 WAPLQ7Z5K2 1190 aa26.85■■□□□ 1.89
CLSTN3-214ENST00000542663 GLI3P10071 1580 aa26.84■■□□□ 1.89
CLSTN3-214ENST00000542663 LRPPRCP42704 1394 aaKnown RBP26.84■■□□□ 1.89
CLSTN3-214ENST00000542663 PLEKHH1Q9ULM0 1364 aa26.84■■□□□ 1.89
CLSTN3-214ENST00000542663 USP32Q8NFA0 1604 aa26.83■■□□□ 1.88
CLSTN3-214ENST00000542663 CCDC144AA2RUR9 1427 aa26.82■■□□□ 1.88
CLSTN3-214ENST00000542663 NUTM2FA1L443 756 aa26.82■■□□□ 1.88
CLSTN3-214ENST00000542663 STK26Q9P289 416 aa26.82■■□□□ 1.88
CLSTN3-214ENST00000542663 ABCA3Q99758 1704 aa26.81■■□□□ 1.88
CLSTN3-214ENST00000542663 ABCC11Q96J66 1382 aa26.81■■□□□ 1.88
CLSTN3-214ENST00000542663 PIK3C2GO75747 1445 aa26.81■■□□□ 1.88
CLSTN3-214ENST00000542663 SLIT2O94813 1529 aa26.8■■□□□ 1.88
CLSTN3-214ENST00000542663 RGL3Q3MIN7 710 aa26.79■■□□□ 1.88
CLSTN3-214ENST00000542663 GJD4Q96KN9 370 aaPredicted RBP26.79■■□□□ 1.88
CLSTN3-214ENST00000542663 ANKRD30BQ9BXX2 1392 aa26.79■■□□□ 1.88
CLSTN3-214ENST00000542663 PLCH1Q4KWH8 1693 aa26.79■■□□□ 1.88
CLSTN3-214ENST00000542663 TMEM132EQ6IEE7 984 aa26.78■■□□□ 1.88
CLSTN3-214ENST00000542663 RALGAPBQ86X10 1494 aa26.76■■□□□ 1.87
CLSTN3-214ENST00000542663 YTHDC2Q9H6S0 1430 aaKnown RBP26.76■■□□□ 1.87
CLSTN3-214ENST00000542663 SPATA31A3Q5VYP0 1347 aa26.76■■□□□ 1.87
CLSTN3-214ENST00000542663 ZRANB1Q9UGI0 708 aa26.75■■□□□ 1.87
CLSTN3-214ENST00000542663 NWD2Q9ULI1 1742 aa26.75■■□□□ 1.87
CLSTN3-214ENST00000542663 CCDC125Q86Z20 511 aa26.74■■□□□ 1.87
CLSTN3-214ENST00000542663 UNC5CLQ8IV45 518 aa26.72■■□□□ 1.87
CLSTN3-214ENST00000542663 MPHOSPH9Q99550 1183 aa26.7■■□□□ 1.86
CLSTN3-214ENST00000542663 TNS3Q68CZ2 1445 aa26.68■■□□□ 1.86
CLSTN3-214ENST00000542663 KRT28Q7Z3Y7 464 aa26.68■■□□□ 1.86
CLSTN3-214ENST00000542663 NRXN1Q9ULB1 1477 aa26.68■■□□□ 1.86
CLSTN3-214ENST00000542663 BLMP54132 1417 aaPredicted RBP26.66■■□□□ 1.86
CLSTN3-214ENST00000542663 SIRT1Q96EB6 747 aa26.66■■□□□ 1.86
CLSTN3-214ENST00000542663 NRAPQ86VF7 1730 aa26.65■■□□□ 1.86
CLSTN3-214ENST00000542663 TRPM3Q9HCF6 1732 aaPredicted RBP26.64■■□□□ 1.85
CLSTN3-214ENST00000542663 C14orf93Q9H972 538 aaKnown RBP26.63■■□□□ 1.85
CLSTN3-214ENST00000542663 PHF8Q9UPP1 1060 aa26.63■■□□□ 1.85
CLSTN3-214ENST00000542663 CABLES1Q8TDN4 633 aa26.62■■□□□ 1.85
CLSTN3-214ENST00000542663 ADGRB2O60241 1585 aa26.6■■□□□ 1.85
CLSTN3-214ENST00000542663 ALS2Q96Q42 1657 aa26.6■■□□□ 1.85
CLSTN3-214ENST00000542663 SBNO1A3KN83 1393 aa26.59■■□□□ 1.85
CLSTN3-214ENST00000542663 VPS72Q15906 364 aa26.59■■□□□ 1.85
CLSTN3-214ENST00000542663 CFAP70Q5T0N1 1121 aa26.58■■□□□ 1.85
CLSTN3-214ENST00000542663 SEPT12Q8IYM1 358 aa26.58■■□□□ 1.85
CLSTN3-214ENST00000542663 DLC1Q96QB1 1528 aa26.58■■□□□ 1.85
CLSTN3-214ENST00000542663 DHX57Q6P158 1386 aaKnown RBP26.58■■□□□ 1.84
CLSTN3-214ENST00000542663 CRYBG1Q9Y4K1 1723 aa26.57■■□□□ 1.84
CLSTN3-214ENST00000542663 PSME1Q06323 249 aa26.57■■□□□ 1.84
CLSTN3-214ENST00000542663 DEFB132Q7Z7B7 95 aa26.57■■□□□ 1.84
CLSTN3-214ENST00000542663 HAP1P54257 671 aaPredicted RBP26.56■■□□□ 1.84
CLSTN3-214ENST00000542663 ONECUT3O60422 494 aaPredicted RBP26.55■■□□□ 1.84
CLSTN3-214ENST00000542663 PLEKHG5O94827 1062 aa26.55■■□□□ 1.84
CLSTN3-214ENST00000542663 PRAM1Q96QH2 718 aa26.55■■□□□ 1.84
CLSTN3-214ENST00000542663 LRP5O75197 1615 aa26.54■■□□□ 1.84
CLSTN3-214ENST00000542663 SAFB2Q14151 953 aaKnown RBP eCLIP26.54■■□□□ 1.84
CLSTN3-214ENST00000542663 ARHGEF10O15013 1369 aa26.54■■□□□ 1.84
CLSTN3-214ENST00000542663 ADGRB1O14514 1584 aa26.54■■□□□ 1.84
CLSTN3-214ENST00000542663 ANKARQ7Z5J8 1434 aa26.53■■□□□ 1.84
CLSTN3-214ENST00000542663 COL14A1Q05707 1796 aaKnown RBP26.53■■□□□ 1.84
CLSTN3-214ENST00000542663 LMOD2Q6P5Q4 547 aa26.51■■□□□ 1.83
CLSTN3-214ENST00000542663 FAM83GA6ND36 823 aa26.5■■□□□ 1.83
CLSTN3-214ENST00000542663 PMFBP1Q8TBY8 1022 aa26.5■■□□□ 1.83
CLSTN3-214ENST00000542663 CCDC9Q9Y3X0 531 aaKnown RBP26.5■■□□□ 1.83
CLSTN3-214ENST00000542663 KRT27Q7Z3Y8 459 aa26.49■■□□□ 1.83
CLSTN3-214ENST00000542663 RGPD1P0DJD0 1748 aa26.48■■□□□ 1.83
CLSTN3-214ENST00000542663 SF3B2Q13435 895 aaKnown RBP26.47■■□□□ 1.83
CLSTN3-214ENST00000542663 TULP4Q9NRJ4 1543 aa26.44■■□□□ 1.82
CLSTN3-214ENST00000542663 POGKQ9P215 609 aa26.44■■□□□ 1.82
CLSTN3-214ENST00000542663 ITSN1Q15811 1721 aa26.44■■□□□ 1.82
CLSTN3-214ENST00000542663 TNS1Q9HBL0 1735 aaKnown RBP26.44■■□□□ 1.82
CLSTN3-214ENST00000542663 THSD7AQ9UPZ6 1657 aa26.44■■□□□ 1.82
CLSTN3-214ENST00000542663 ARHGEF28Q8N1W1 1705 aaKnown RBP26.42■■□□□ 1.82
CLSTN3-214ENST00000542663 PRR36Q9H6K5 1346 aa26.42■■□□□ 1.82
CLSTN3-214ENST00000542663 FAM98CQ17RN3 349 aaKnown RBP26.41■■□□□ 1.82
CLSTN3-214ENST00000542663 HIRIP3Q9BW71 556 aaPredicted RBP26.41■■□□□ 1.82
CLSTN3-214ENST00000542663 BTG4Q9NY30 223 aa26.41■■□□□ 1.82
CLSTN3-214ENST00000542663 ACIN1Q9UKV3 1341 aaKnown RBP26.39■■□□□ 1.82
CLSTN3-214ENST00000542663 TRAK1Q9UPV9 953 aa26.39■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms