RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 CAMSAP1Q5T5Y3 1602 aa14.47□□□□□ -0.09
CDH3-203ENST00000542274 LMTK2Q8IWU2 1503 aa14.47□□□□□ -0.09
CDH3-203ENST00000542274 TMED8Q6PL24 325 aaPredicted RBP14.47□□□□□ -0.09
CDH3-203ENST00000542274 CCDC9Q9Y3X0 531 aaKnown RBP14.47□□□□□ -0.09
CDH3-203ENST00000542274 POLR1AO95602 1720 aaPredicted RBP14.47□□□□□ -0.09
CDH3-203ENST00000542274 PPP6R1Q9UPN7 881 aa14.46□□□□□ -0.09
CDH3-203ENST00000542274 LAS1LQ9Y4W2 734 aaKnown RBP14.46□□□□□ -0.09
CDH3-203ENST00000542274 CHGAP10645 457 aaKnown RBP14.45□□□□□ -0.1
CDH3-203ENST00000542274 MROH2AA6NES4 1674 aa14.45□□□□□ -0.1
CDH3-203ENST00000542274 FRAT1Q92837 279 aaPredicted RBP14.45□□□□□ -0.1
CDH3-203ENST00000542274 TRPM1Q7Z4N2 1603 aa14.45□□□□□ -0.1
CDH3-203ENST00000542274 PNNQ9H307 717 aaKnown RBP14.44□□□□□ -0.1
CDH3-203ENST00000542274 KIF1BO60333 1816 aa14.44□□□□□ -0.1
CDH3-203ENST00000542274 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.42□□□□□ -0.1
CDH3-203ENST00000542274 DDRGK1Q96HY6 314 aa14.41□□□□□ -0.1
CDH3-203ENST00000542274 ARHGEF40Q8TER5 1519 aa14.41□□□□□ -0.1
CDH3-203ENST00000542274 MADDQ8WXG6 1647 aa14.39□□□□□ -0.11
CDH3-203ENST00000542274 SYNMO15061 1565 aa14.39□□□□□ -0.11
CDH3-203ENST00000542274 TICAM2Q86XR7 235 aa14.39□□□□□ -0.11
CDH3-203ENST00000542274 ZC3H13Q5T200 1668 aaKnown RBP14.39□□□□□ -0.11
CDH3-203ENST00000542274 FBXO31Q5XUX0 539 aaPredicted RBP14.38□□□□□ -0.11
CDH3-203ENST00000542274 SENP3Q9H4L4 574 aaPredicted RBP14.38□□□□□ -0.11
CDH3-203ENST00000542274 DISP3Q9P2K9 1392 aa14.38□□□□□ -0.11
CDH3-203ENST00000542274 CLTCQ00610 1675 aaKnown RBP14.38□□□□□ -0.11
CDH3-203ENST00000542274 IRX3P78415 501 aaPredicted RBP14.38□□□□□ -0.11
CDH3-203ENST00000542274 MAPK8IP2Q13387 824 aaPredicted RBP14.38□□□□□ -0.11
CDH3-203ENST00000542274 PATL2C9JE40 543 aaKnown RBP14.37□□□□□ -0.11
CDH3-203ENST00000542274 NUTM2DQ5VT03 806 aaPredicted RBP14.37□□□□□ -0.11
CDH3-203ENST00000542274 TESK2Q96S53 571 aa14.37□□□□□ -0.11
CDH3-203ENST00000542274 FAM193AP78312 1265 aa14.36□□□□□ -0.11
CDH3-203ENST00000542274 REREQ9P2R6 1566 aa14.36□□□□□ -0.11
CDH3-203ENST00000542274 FAM43BQ6ZT52 329 aaPredicted RBP14.36□□□□□ -0.11
CDH3-203ENST00000542274 ADGRF5Q8IZF2 1346 aa14.36□□□□□ -0.11
CDH3-203ENST00000542274 NOS1P29475 1434 aa14.36□□□□□ -0.11
CDH3-203ENST00000542274 SMAP1Q8IYB5 467 aaPredicted RBP14.35□□□□□ -0.11
CDH3-203ENST00000542274 PREX1Q8TCU6 1659 aa14.35□□□□□ -0.11
CDH3-203ENST00000542274 ADGRB3O60242 1522 aa14.35□□□□□ -0.11
CDH3-203ENST00000542274 AGLP35573 1532 aa14.35□□□□□ -0.11
CDH3-203ENST00000542274 IFT172Q9UG01 1749 aa14.35□□□□□ -0.11
CDH3-203ENST00000542274 GPRASP1Q5JY77 1395 aa14.35□□□□□ -0.11
CDH3-203ENST00000542274 MYO5BQ9ULV0 1848 aa14.35□□□□□ -0.11
CDH3-203ENST00000542274 ZNF592Q92610 1267 aa14.34□□□□□ -0.11
CDH3-203ENST00000542274 TMEM132AQ24JP5 1023 aa14.34□□□□□ -0.11
CDH3-203ENST00000542274 SLC52A1Q9NWF4 448 aa14.34□□□□□ -0.11
CDH3-203ENST00000542274 IDI1Q13907 227 aa14.33□□□□□ -0.12
CDH3-203ENST00000542274 PPP4R3BQ5MIZ7 849 aa14.33□□□□□ -0.12
CDH3-203ENST00000542274 CFAP70Q5T0N1 1121 aa14.32□□□□□ -0.12
CDH3-203ENST00000542274 ARHGAP31Q2M1Z3 1444 aa14.32□□□□□ -0.12
CDH3-203ENST00000542274 PIK3C2BO00750 1634 aa14.32□□□□□ -0.12
CDH3-203ENST00000542274 CC2D1BQ5T0F9 858 aaKnown RBP14.31□□□□□ -0.12
CDH3-203ENST00000542274 PPLO60437 1756 aa14.31□□□□□ -0.12
CDH3-203ENST00000542274 VGFO15240 615 aaPredicted RBP14.31□□□□□ -0.12
CDH3-203ENST00000542274 HDAC5Q9UQL6 1122 aa14.31□□□□□ -0.12
CDH3-203ENST00000542274 GRIPAP1Q4V328 841 aa14.3□□□□□ -0.12
CDH3-203ENST00000542274 TMC1Q8TDI8 760 aa14.3□□□□□ -0.12
CDH3-203ENST00000542274 MYCNP04198 464 aaPredicted RBP14.3□□□□□ -0.12
CDH3-203ENST00000542274 CLCN1P35523 988 aa14.29□□□□□ -0.12
CDH3-203ENST00000542274 ANP32BQ92688 251 aaKnown RBP14.29□□□□□ -0.12
CDH3-203ENST00000542274 PANK3Q9H999 370 aa14.29□□□□□ -0.12
CDH3-203ENST00000542274 LAMC1P11047 1609 aa14.29□□□□□ -0.12
CDH3-203ENST00000542274 NEURL4Q96JN8 1562 aa14.29□□□□□ -0.12
CDH3-203ENST00000542274 PER1O15534 1290 aaPredicted RBP14.29□□□□□ -0.12
CDH3-203ENST00000542274 ERVK-7P63135 1459 aa14.29□□□□□ -0.12
CDH3-203ENST00000542274 PNISRQ8TF01 805 aaKnown RBP14.28□□□□□ -0.12
CDH3-203ENST00000542274 ZBED9Q6R2W3 1325 aa14.28□□□□□ -0.12
CDH3-203ENST00000542274 MYOM2P54296 1465 aa14.28□□□□□ -0.12
CDH3-203ENST00000542274 CLGNO14967 610 aa14.28□□□□□ -0.12
CDH3-203ENST00000542274 ESF1Q9H501 851 aaKnown RBP14.28□□□□□ -0.12
CDH3-203ENST00000542274 IQGAP1P46940 1657 aa14.27□□□□□ -0.12
CDH3-203ENST00000542274 E9PSI1 815 aa14.27□□□□□ -0.12
CDH3-203ENST00000542274 TMF1P82094 1093 aa14.26□□□□□ -0.13
CDH3-203ENST00000542274 PTMAP06454 111 aaKnown RBP14.26□□□□□ -0.13
CDH3-203ENST00000542274 MMP14P50281 582 aa14.26□□□□□ -0.13
CDH3-203ENST00000542274 TMEM131LA2VDJ0 1609 aa14.25□□□□□ -0.13
CDH3-203ENST00000542274 UTP14CQ5TAP6 766 aaKnown RBP14.25□□□□□ -0.13
CDH3-203ENST00000542274 NEXMIFQ5QGS0 1516 aa14.25□□□□□ -0.13
CDH3-203ENST00000542274 MYBBP1AQ9BQG0 1328 aaKnown RBP14.25□□□□□ -0.13
CDH3-203ENST00000542274 TMEM132EQ6IEE7 984 aa14.24□□□□□ -0.13
CDH3-203ENST00000542274 KIAA1210Q9ULL0 1709 aa14.24□□□□□ -0.13
CDH3-203ENST00000542274 SOX12O15370 315 aa14.24□□□□□ -0.13
CDH3-203ENST00000542274 APPP05067 770 aa14.24□□□□□ -0.13
CDH3-203ENST00000542274 TPM2P07951 284 aa14.24□□□□□ -0.13
CDH3-203ENST00000542274 STAG3Q9UJ98 1225 aa14.24□□□□□ -0.13
CDH3-203ENST00000542274 ZMYM3Q14202 1370 aa14.24□□□□□ -0.13
CDH3-203ENST00000542274 PPP4R2Q9NY27 417 aa14.23□□□□□ -0.13
CDH3-203ENST00000542274 NRXN1Q9ULB1 1477 aa14.23□□□□□ -0.13
CDH3-203ENST00000542274 SCAF11Q99590 1463 aaKnown RBP14.22□□□□□ -0.13
CDH3-203ENST00000542274 PLCD4Q9BRC7 762 aa14.22□□□□□ -0.13
CDH3-203ENST00000542274 PIK3C2GO75747 1445 aa14.22□□□□□ -0.13
CDH3-203ENST00000542274 CEBPAP49715 358 aaPredicted RBP14.22□□□□□ -0.13
CDH3-203ENST00000542274 KTN1Q86UP2 1357 aaKnown RBP14.22□□□□□ -0.13
CDH3-203ENST00000542274 RALBP1Q15311 655 aa14.21□□□□□ -0.13
CDH3-203ENST00000542274 SPATA31D1Q6ZQQ2 1576 aa14.21□□□□□ -0.13
CDH3-203ENST00000542274 DMTNQ08495 405 aa14.21□□□□□ -0.13
CDH3-203ENST00000542274 PARD3Q8TEW0 1356 aa14.21□□□□□ -0.13
CDH3-203ENST00000542274 CLSTN1O94985 981 aa14.2□□□□□ -0.14
CDH3-203ENST00000542274 NFKBIBQ15653 356 aa14.2□□□□□ -0.14
CDH3-203ENST00000542274 RPGRIP1LQ68CZ1 1315 aa14.2□□□□□ -0.14
CDH3-203ENST00000542274 DNTTIP2Q5QJE6 756 aaKnown RBP14.2□□□□□ -0.14
CDH3-203ENST00000542274 TRAK1Q9UPV9 953 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms