RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 NBPF1Q3BBV0 1214 aa24.8■■□□□ 1.56
CLSTN3-210ENST00000540931 POGKQ9P215 609 aa24.8■■□□□ 1.56
CLSTN3-210ENST00000540931 TMEM94Q12767 1356 aa24.8■■□□□ 1.56
CLSTN3-210ENST00000540931 C14orf37Q86TY3 774 aa24.79■■□□□ 1.56
CLSTN3-210ENST00000540931 MSH6P52701 1360 aa24.79■■□□□ 1.56
CLSTN3-210ENST00000540931 C19orf44Q9H6X5 657 aa24.78■■□□□ 1.56
CLSTN3-210ENST00000540931 TRAK1Q9UPV9 953 aa24.78■■□□□ 1.56
CLSTN3-210ENST00000540931 ROBO2Q9HCK4 1378 aa24.77■■□□□ 1.56
CLSTN3-210ENST00000540931 DCCP43146 1447 aa24.76■■□□□ 1.55
CLSTN3-210ENST00000540931 CADPS2Q86UW7 1296 aa24.74■■□□□ 1.55
CLSTN3-210ENST00000540931 PRAM1Q96QH2 718 aa24.73■■□□□ 1.55
CLSTN3-210ENST00000540931 ADGRL3Q9HAR2 1447 aa24.72■■□□□ 1.55
CLSTN3-210ENST00000540931 CENPJQ9HC77 1338 aaPredicted RBP24.71■■□□□ 1.55
CLSTN3-210ENST00000540931 ATF3P18847 181 aa24.71■■□□□ 1.55
CLSTN3-210ENST00000540931 POTEAQ6S8J7 498 aa24.69■■□□□ 1.54
CLSTN3-210ENST00000540931 RBM33Q96EV2 1170 aaKnown RBP24.69■■□□□ 1.54
CLSTN3-210ENST00000540931 WAPLQ7Z5K2 1190 aa24.68■■□□□ 1.54
CLSTN3-210ENST00000540931 ARHGEF28Q8N1W1 1705 aaKnown RBP24.68■■□□□ 1.54
CLSTN3-210ENST00000540931 ROBO1Q9Y6N7 1651 aa24.66■■□□□ 1.54
CLSTN3-210ENST00000540931 SBNO2Q9Y2G9 1366 aa24.66■■□□□ 1.54
CLSTN3-210ENST00000540931 EIF4G2P78344 907 aaKnown RBP eCLIP24.63■■□□□ 1.53
CLSTN3-210ENST00000540931 CDC42BPGQ6DT37 1551 aa24.63■■□□□ 1.53
CLSTN3-210ENST00000540931 USP47Q96K76 1375 aa24.62■■□□□ 1.53
CLSTN3-210ENST00000540931 ADGRB2O60241 1585 aa24.62■■□□□ 1.53
CLSTN3-210ENST00000540931 PLEKHH1Q9ULM0 1364 aa24.61■■□□□ 1.53
CLSTN3-210ENST00000540931 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.61■■□□□ 1.53
CLSTN3-210ENST00000540931 NALCNQ8IZF0 1738 aa24.59■■□□□ 1.53
CLSTN3-210ENST00000540931 SAFB2Q14151 953 aaKnown RBP eCLIP24.59■■□□□ 1.53
CLSTN3-210ENST00000540931 SLAIN2Q9P270 581 aa24.59■■□□□ 1.53
CLSTN3-210ENST00000540931 EVC2Q86UK5 1308 aa24.59■■□□□ 1.53
CLSTN3-210ENST00000540931 WASLO00401 505 aaPredicted RBP24.57■■□□□ 1.52
CLSTN3-210ENST00000540931 CDCA8Q53HL2 280 aa24.57■■□□□ 1.52
CLSTN3-210ENST00000540931 PUS7Q96PZ0 661 aaKnown RBP24.57■■□□□ 1.52
CLSTN3-210ENST00000540931 MINK1Q8N4C8 1332 aaPredicted RBP24.57■■□□□ 1.52
CLSTN3-210ENST00000540931 ANKARQ7Z5J8 1434 aa24.55■■□□□ 1.52
CLSTN3-210ENST00000540931 ST20-MTHFSA0A0A6YYL1 179 aa24.55■■□□□ 1.52
CLSTN3-210ENST00000540931 QRICH2Q9H0J4 1663 aa24.55■■□□□ 1.52
CLSTN3-210ENST00000540931 TMF1P82094 1093 aa24.52■■□□□ 1.52
CLSTN3-210ENST00000540931 JCADQ9P266 1359 aa24.52■■□□□ 1.52
CLSTN3-210ENST00000540931 MST1RQ04912 1400 aa24.51■■□□□ 1.51
CLSTN3-210ENST00000540931 PHLPP1O60346 1717 aa24.5■■□□□ 1.51
CLSTN3-210ENST00000540931 HIRIP3Q9BW71 556 aaPredicted RBP24.5■■□□□ 1.51
CLSTN3-210ENST00000540931 CDK19Q9BWU1 502 aa24.5■■□□□ 1.51
CLSTN3-210ENST00000540931 TULP4Q9NRJ4 1543 aa24.49■■□□□ 1.51
CLSTN3-210ENST00000540931 FMN2Q9NZ56 1722 aa24.49■■□□□ 1.51
CLSTN3-210ENST00000540931 SRPK2P78362 688 aaKnown RBP24.48■■□□□ 1.51
CLSTN3-210ENST00000540931 C1orf167Q5SNV9 1468 aa24.48■■□□□ 1.51
CLSTN3-210ENST00000540931 ATAD2Q6PL18 1390 aa24.47■■□□□ 1.51
CLSTN3-210ENST00000540931 TESK2Q96S53 571 aa24.47■■□□□ 1.51
CLSTN3-210ENST00000540931 CCDC61Q9Y6R9 512 aa24.46■■□□□ 1.51
CLSTN3-210ENST00000540931 HSPA5P11021 654 aaKnown RBP24.45■■□□□ 1.5
CLSTN3-210ENST00000540931 COL16A1Q07092 1604 aaPredicted RBP24.45■■□□□ 1.5
CLSTN3-210ENST00000540931 ESCO1Q5FWF5 840 aa24.43■■□□□ 1.5
CLSTN3-210ENST00000540931 NUDT16Q96DE0 195 aaKnown RBP24.43■■□□□ 1.5
CLSTN3-210ENST00000540931 NINLQ9Y2I6 1382 aa24.42■■□□□ 1.5
CLSTN3-210ENST00000540931 ITSN1Q15811 1721 aa24.41■■□□□ 1.5
CLSTN3-210ENST00000540931 KIF1AQ12756 1690 aa24.4■■□□□ 1.5
CLSTN3-210ENST00000540931 SPATA31A6Q5VVP1 1343 aa24.4■■□□□ 1.5
CLSTN3-210ENST00000540931 BRINP3Q76B58 766 aa24.4■■□□□ 1.5
CLSTN3-210ENST00000540931 LRP6O75581 1613 aa24.39■■□□□ 1.5
CLSTN3-210ENST00000540931 NPHP3Q7Z494 1330 aa24.39■■□□□ 1.5
CLSTN3-210ENST00000540931 PHF8Q9UPP1 1060 aa24.39■■□□□ 1.49
CLSTN3-210ENST00000540931 ATP7BP35670 1465 aa24.38■■□□□ 1.49
CLSTN3-210ENST00000540931 PLEKHG3A1L390 1219 aa24.37■■□□□ 1.49
CLSTN3-210ENST00000540931 CABP2Q9NPB3 220 aa24.37■■□□□ 1.49
CLSTN3-210ENST00000540931 NUTM2FA1L443 756 aa24.36■■□□□ 1.49
CLSTN3-210ENST00000540931 PSME1Q06323 249 aa24.36■■□□□ 1.49
CLSTN3-210ENST00000540931 AHDC1Q5TGY3 1603 aaPredicted RBP24.35■■□□□ 1.49
CLSTN3-210ENST00000540931 BRD4O60885 1362 aaPredicted RBP24.35■■□□□ 1.49
CLSTN3-210ENST00000540931 ORAI2Q96SN7 254 aa24.35■■□□□ 1.49
CLSTN3-210ENST00000540931 ZNF692Q9BU19 519 aaPredicted RBP24.35■■□□□ 1.49
CLSTN3-210ENST00000540931 ZNF772Q68DY9 489 aaPredicted RBP24.34■■□□□ 1.49
CLSTN3-210ENST00000540931 NGDNQ8NEJ9 315 aaKnown RBP24.33■■□□□ 1.49
CLSTN3-210ENST00000540931 PRR36Q9H6K5 1346 aa24.33■■□□□ 1.48
CLSTN3-210ENST00000540931 USP32Q8NFA0 1604 aa24.32■■□□□ 1.48
CLSTN3-210ENST00000540931 MEX3CQ5U5Q3 659 aaKnown RBP24.32■■□□□ 1.48
CLSTN3-210ENST00000540931 PPIP5K1Q6PFW1 1433 aa24.32■■□□□ 1.48
CLSTN3-210ENST00000540931 TERF2IPQ9NYB0 399 aa24.31■■□□□ 1.48
CLSTN3-210ENST00000540931 SHPRHQ149N8 1683 aa24.3■■□□□ 1.48
CLSTN3-210ENST00000540931 UPF1Q92900 1129 aaKnown RBP eCLIP24.3■■□□□ 1.48
CLSTN3-210ENST00000540931 TOPAZ1Q8N9V7 1692 aa24.3■■□□□ 1.48
CLSTN3-210ENST00000540931 POLR3AO14802 1390 aaPredicted RBP24.29■■□□□ 1.48
CLSTN3-210ENST00000540931 LRRC59Q96AG4 307 aaKnown RBP24.29■■□□□ 1.48
CLSTN3-210ENST00000540931 CABP1Q9NZU7 370 aa24.29■■□□□ 1.48
CLSTN3-210ENST00000540931 FOXO3O43524 673 aa24.28■■□□□ 1.48
CLSTN3-210ENST00000540931 HDGFL2Q7Z4V5 671 aaPredicted RBP24.28■■□□□ 1.48
CLSTN3-210ENST00000540931 RGPD8O14715 1765 aaPredicted RBP24.28■■□□□ 1.48
CLSTN3-210ENST00000540931 NHSL1Q5SYE7 1610 aa24.28■■□□□ 1.48
CLSTN3-210ENST00000540931 TMC1Q8TDI8 760 aa24.27■■□□□ 1.48
CLSTN3-210ENST00000540931 SOS2Q07890 1332 aaPredicted RBP24.27■■□□□ 1.48
CLSTN3-210ENST00000540931 PMFBP1Q8TBY8 1022 aa24.26■■□□□ 1.47
CLSTN3-210ENST00000540931 ACEP12821 1306 aa24.26■■□□□ 1.47
CLSTN3-210ENST00000540931 KRT28Q7Z3Y7 464 aa24.24■■□□□ 1.47
CLSTN3-210ENST00000540931 SBNO1A3KN83 1393 aa24.24■■□□□ 1.47
CLSTN3-210ENST00000540931 RXRBP28702 533 aa24.23■■□□□ 1.47
CLSTN3-210ENST00000540931 NUTM2BA6NNL0 878 aaPredicted RBP24.21■■□□□ 1.47
CLSTN3-210ENST00000540931 NUTM2EB1AL46 878 aaPredicted RBP24.21■■□□□ 1.47
CLSTN3-210ENST00000540931 NUTM2AQ8IVF1 878 aaPredicted RBP24.21■■□□□ 1.47
CLSTN3-210ENST00000540931 CPSF1Q10570 1443 aaKnown RBP24.19■■□□□ 1.46
CLSTN3-210ENST00000540931 ARHGEF10O15013 1369 aa24.19■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms