RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 RXRBP28702 533 aa21.02■□□□□ 0.96
SNHG1-213ENST00000540725 LRPPRCP42704 1394 aaKnown RBP21.01■□□□□ 0.95
SNHG1-213ENST00000540725 C8orf37Q96NL8 207 aa21.01■□□□□ 0.95
SNHG1-213ENST00000540725 STK26Q9P289 416 aa21.01■□□□□ 0.95
SNHG1-213ENST00000540725 CDK12Q9NYV4 1490 aaPredicted RBP21.01■□□□□ 0.95
SNHG1-213ENST00000540725 ACIN1Q9UKV3 1341 aaKnown RBP21■□□□□ 0.95
SNHG1-213ENST00000540725 ABCC11Q96J66 1382 aa20.99■□□□□ 0.95
SNHG1-213ENST00000540725 COL22A1Q8NFW1 1626 aaPredicted RBP20.98■□□□□ 0.95
SNHG1-213ENST00000540725 TMEM132EQ6IEE7 984 aa20.97■□□□□ 0.95
SNHG1-213ENST00000540725 WAPLQ7Z5K2 1190 aa20.97■□□□□ 0.95
SNHG1-213ENST00000540725 ADAMTS2O95450 1211 aa20.97■□□□□ 0.95
SNHG1-213ENST00000540725 ESCO1Q5FWF5 840 aa20.97■□□□□ 0.95
SNHG1-213ENST00000540725 FMN2Q9NZ56 1722 aa20.97■□□□□ 0.95
SNHG1-213ENST00000540725 NPHP3Q7Z494 1330 aa20.96■□□□□ 0.95
SNHG1-213ENST00000540725 YTHDC2Q9H6S0 1430 aaKnown RBP20.96■□□□□ 0.95
SNHG1-213ENST00000540725 PLEKHH1Q9ULM0 1364 aa20.95■□□□□ 0.94
SNHG1-213ENST00000540725 NGLY1Q96IV0 654 aa20.95■□□□□ 0.94
SNHG1-213ENST00000540725 PXDNQ92626 1479 aa20.94■□□□□ 0.94
SNHG1-213ENST00000540725 UPF1Q92900 1129 aaKnown RBP eCLIP20.94■□□□□ 0.941e-26■□□□□ 8.6
SNHG1-213ENST00000540725 QTRT2Q9H974 415 aaKnown RBP20.94■□□□□ 0.94
SNHG1-213ENST00000540725 RAB3GAP2Q9H2M9 1393 aa20.94■□□□□ 0.94
SNHG1-213ENST00000540725 MYOM2P54296 1465 aa20.94■□□□□ 0.94
SNHG1-213ENST00000540725 NRXN1Q9ULB1 1477 aa20.94■□□□□ 0.94
SNHG1-213ENST00000540725 MARF1Q9Y4F3 1742 aaKnown RBP20.92■□□□□ 0.94
SNHG1-213ENST00000540725 NUTM2FA1L443 756 aa20.92■□□□□ 0.94
SNHG1-213ENST00000540725 RBM6P78332 1123 aaKnown RBP20.92■□□□□ 0.94
SNHG1-213ENST00000540725 RGS12O14924 1447 aa20.92■□□□□ 0.94
SNHG1-213ENST00000540725 FOXO3O43524 673 aa20.91■□□□□ 0.94
SNHG1-213ENST00000540725 C14orf93Q9H972 538 aaKnown RBP20.91■□□□□ 0.94
SNHG1-213ENST00000540725 RGPD8O14715 1765 aaPredicted RBP20.91■□□□□ 0.94
SNHG1-213ENST00000540725 KIF1AQ12756 1690 aa20.91■□□□□ 0.94
SNHG1-213ENST00000540725 XPCQ01831 940 aaPredicted RBP20.89■□□□□ 0.93
SNHG1-213ENST00000540725 CFAP70Q5T0N1 1121 aa20.88■□□□□ 0.93
SNHG1-213ENST00000540725 SIRT1Q96EB6 747 aa20.88■□□□□ 0.93
SNHG1-213ENST00000540725 DHX57Q6P158 1386 aaKnown RBP20.88■□□□□ 0.93
SNHG1-213ENST00000540725 USP21Q9UK80 565 aa20.87■□□□□ 0.93
SNHG1-213ENST00000540725 FNBP4Q8N3X1 1017 aaPredicted RBP20.85■□□□□ 0.93
SNHG1-213ENST00000540725 TRPC5Q9UL62 973 aaPredicted RBP20.84■□□□□ 0.93
SNHG1-213ENST00000540725 ATRNO75882 1429 aa20.82■□□□□ 0.92
SNHG1-213ENST00000540725 DLC1Q96QB1 1528 aa20.82■□□□□ 0.92
SNHG1-213ENST00000540725 ADGRB1O14514 1584 aa20.81■□□□□ 0.92
SNHG1-213ENST00000540725 SAFB2Q14151 953 aaKnown RBP eCLIP20.81■□□□□ 0.92
SNHG1-213ENST00000540725 SPATA31A3Q5VYP0 1347 aa20.81■□□□□ 0.92
SNHG1-213ENST00000540725 PRAM1Q96QH2 718 aa20.81■□□□□ 0.92
SNHG1-213ENST00000540725 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.79■□□□□ 0.92
SNHG1-213ENST00000540725 BCL9LQ86UU0 1499 aa20.79■□□□□ 0.92
SNHG1-213ENST00000540725 KRT28Q7Z3Y7 464 aa20.79■□□□□ 0.92
SNHG1-213ENST00000540725 PHF8Q9UPP1 1060 aa20.79■□□□□ 0.92
SNHG1-213ENST00000540725 ADGRB2O60241 1585 aa20.79■□□□□ 0.92
SNHG1-213ENST00000540725 USP32Q8NFA0 1604 aa20.78■□□□□ 0.92
SNHG1-213ENST00000540725 POGKQ9P215 609 aa20.77■□□□□ 0.92
SNHG1-213ENST00000540725 TNS3Q68CZ2 1445 aa20.76■□□□□ 0.91
SNHG1-213ENST00000540725 ATAD2Q6PL18 1390 aa20.76■□□□□ 0.91
SNHG1-213ENST00000540725 ABCA3Q99758 1704 aa20.75■□□□□ 0.91
SNHG1-213ENST00000540725 KDM2AQ9Y2K7 1162 aa20.74■□□□□ 0.91
SNHG1-213ENST00000540725 ANKARQ7Z5J8 1434 aa20.74■□□□□ 0.91
SNHG1-213ENST00000540725 HRCP23327 699 aa20.73■□□□□ 0.91
SNHG1-213ENST00000540725 PSME1Q06323 249 aa20.73■□□□□ 0.91
SNHG1-213ENST00000540725 DCAF11Q8TEB1 546 aa20.73■□□□□ 0.91
SNHG1-213ENST00000540725 TRAK1Q9UPV9 953 aa20.73■□□□□ 0.91
SNHG1-213ENST00000540725 EP400Q96L91 3159 aa20.73■□□□□ 0.91
SNHG1-213ENST00000540725 SLIT2O94813 1529 aa20.73■□□□□ 0.91
SNHG1-213ENST00000540725 SBNO1A3KN83 1393 aa20.71■□□□□ 0.91
SNHG1-213ENST00000540725 GJD4Q96KN9 370 aaPredicted RBP20.71■□□□□ 0.91
SNHG1-213ENST00000540725 PLCH1Q4KWH8 1693 aa20.7■□□□□ 0.9
SNHG1-213ENST00000540725 HAP1P54257 671 aaPredicted RBP20.7■□□□□ 0.9
SNHG1-213ENST00000540725 UNC5CLQ8IV45 518 aa20.7■□□□□ 0.9
SNHG1-213ENST00000540725 PMFBP1Q8TBY8 1022 aa20.7■□□□□ 0.9
SNHG1-213ENST00000540725 STAC3Q96MF2 364 aa20.7■□□□□ 0.9
SNHG1-213ENST00000540725 HIRIP3Q9BW71 556 aaPredicted RBP20.7■□□□□ 0.9
SNHG1-213ENST00000540725 GLI3P10071 1580 aa20.7■□□□□ 0.9
SNHG1-213ENST00000540725 MINK1Q8N4C8 1332 aaPredicted RBP20.69■□□□□ 0.9
SNHG1-213ENST00000540725 ARHGEF28Q8N1W1 1705 aaKnown RBP20.69■□□□□ 0.9
SNHG1-213ENST00000540725 TRPM3Q9HCF6 1732 aaPredicted RBP20.69■□□□□ 0.9
SNHG1-213ENST00000540725 ARHGEF10O15013 1369 aa20.69■□□□□ 0.9
SNHG1-213ENST00000540725 CABLES1Q8TDN4 633 aa20.69■□□□□ 0.9
SNHG1-213ENST00000540725 NWD2Q9ULI1 1742 aa20.68■□□□□ 0.9
SNHG1-213ENST00000540725 RALGAPBQ86X10 1494 aa20.68■□□□□ 0.9
SNHG1-213ENST00000540725 EIF3AQ14152 1382 aaKnown RBP20.68■□□□□ 0.9
SNHG1-213ENST00000540725 LMOD2Q6P5Q4 547 aa20.68■□□□□ 0.9
SNHG1-213ENST00000540725 TULP4Q9NRJ4 1543 aa20.68■□□□□ 0.9
SNHG1-213ENST00000540725 PLEKHG5O94827 1062 aa20.67■□□□□ 0.9
SNHG1-213ENST00000540725 BRWD3Q6RI45 1802 aa20.67■□□□□ 0.9
SNHG1-213ENST00000540725 ALS2Q96Q42 1657 aa20.66■□□□□ 0.9
SNHG1-213ENST00000540725 PRR36Q9H6K5 1346 aa20.65■□□□□ 0.9
SNHG1-213ENST00000540725 ITSN1Q15811 1721 aa20.64■□□□□ 0.9
SNHG1-213ENST00000540725 WASLO00401 505 aaPredicted RBP20.63■□□□□ 0.89
SNHG1-213ENST00000540725 GPRASP1Q5JY77 1395 aa20.62■□□□□ 0.89
SNHG1-213ENST00000540725 KIAA1210Q9ULL0 1709 aa20.62■□□□□ 0.89
SNHG1-213ENST00000540725 NRAPQ86VF7 1730 aa20.6■□□□□ 0.89
SNHG1-213ENST00000540725 CRYBG1Q9Y4K1 1723 aa20.6■□□□□ 0.89
SNHG1-213ENST00000540725 VPS72Q15906 364 aa20.59■□□□□ 0.89
SNHG1-213ENST00000540725 ATP7BP35670 1465 aa20.58■□□□□ 0.89
SNHG1-213ENST00000540725 FAM83GA6ND36 823 aa20.58■□□□□ 0.88
SNHG1-213ENST00000540725 CCDC125Q86Z20 511 aa20.58■□□□□ 0.88
SNHG1-213ENST00000540725 NGDNQ8NEJ9 315 aaKnown RBP20.58■□□□□ 0.88
SNHG1-213ENST00000540725 COL14A1Q05707 1796 aaKnown RBP20.57■□□□□ 0.88
SNHG1-213ENST00000540725 CCDC9Q9Y3X0 531 aaKnown RBP20.57■□□□□ 0.88
SNHG1-213ENST00000540725 SEPT12Q8IYM1 358 aa20.55■□□□□ 0.88
SNHG1-213ENST00000540725 TOPAZ1Q8N9V7 1692 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms