RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 PLEKHH1Q9ULM0 1364 aa14.98□□□□□ -0.01
VPS33A-204ENST00000540669 TOPAZ1Q8N9V7 1692 aa14.97□□□□□ -0.01
VPS33A-204ENST00000540669 NCOA3Q9Y6Q9 1424 aa14.97□□□□□ -0.01
VPS33A-204ENST00000540669 FMN2Q9NZ56 1722 aa14.97□□□□□ -0.01
VPS33A-204ENST00000540669 KCNA6P17658 529 aa14.96□□□□□ -0.01
VPS33A-204ENST00000540669 ADGRL3Q9HAR2 1447 aa14.96□□□□□ -0.01
VPS33A-204ENST00000540669 LRRC7Q96NW7 1537 aa14.96□□□□□ -0.02
VPS33A-204ENST00000540669 USP32Q8NFA0 1604 aa14.95□□□□□ -0.02
VPS33A-204ENST00000540669 NPM3O75607 178 aaKnown RBP14.95□□□□□ -0.02
VPS33A-204ENST00000540669 HSPA5P11021 654 aaKnown RBP14.95□□□□□ -0.02
VPS33A-204ENST00000540669 EIF4G2P78344 907 aaKnown RBP eCLIP14.94□□□□□ -0.02
VPS33A-204ENST00000540669 CENPJQ9HC77 1338 aaPredicted RBP14.93□□□□□ -0.02
VPS33A-204ENST00000540669 DCCP43146 1447 aa14.93□□□□□ -0.02
VPS33A-204ENST00000540669 BCANQ96GW7 911 aa14.93□□□□□ -0.02
VPS33A-204ENST00000540669 AMOTL2Q9Y2J4 779 aa14.93□□□□□ -0.02
VPS33A-204ENST00000540669 ST20-MTHFSA0A0A6YYL1 179 aa14.92□□□□□ -0.02
VPS33A-204ENST00000540669 ATP7BP35670 1465 aa14.91□□□□□ -0.02
VPS33A-204ENST00000540669 DISP3Q9P2K9 1392 aa14.91□□□□□ -0.02
VPS33A-204ENST00000540669 TRAK1Q9UPV9 953 aa14.91□□□□□ -0.02
VPS33A-204ENST00000540669 PRAM1Q96QH2 718 aa14.9□□□□□ -0.02
VPS33A-204ENST00000540669 ZNF335Q9H4Z2 1342 aaPredicted RBP14.9□□□□□ -0.02
VPS33A-204ENST00000540669 IQSEC2Q5JU85 1478 aa14.89□□□□□ -0.03
VPS33A-204ENST00000540669 ITSN1Q15811 1721 aa14.89□□□□□ -0.03
VPS33A-204ENST00000540669 TMEM94Q12767 1356 aa14.87□□□□□ -0.03
VPS33A-204ENST00000540669 STK26Q9P289 416 aa14.87□□□□□ -0.03
VPS33A-204ENST00000540669 ANKARQ7Z5J8 1434 aa14.86□□□□□ -0.03
VPS33A-204ENST00000540669 WAPLQ7Z5K2 1190 aa14.86□□□□□ -0.03
VPS33A-204ENST00000540669 CERKQ8TCT0 537 aa14.86□□□□□ -0.03
VPS33A-204ENST00000540669 PUS7Q96PZ0 661 aaKnown RBP14.86□□□□□ -0.03
VPS33A-204ENST00000540669 CCDC7Q96M83 1385 aa14.85□□□□□ -0.03
VPS33A-204ENST00000540669 C11orf95C9JLR9 678 aaPredicted RBP14.85□□□□□ -0.03
VPS33A-204ENST00000540669 RGPD8O14715 1765 aaPredicted RBP14.84□□□□□ -0.03
VPS33A-204ENST00000540669 NRKQ7Z2Y5 1582 aa14.84□□□□□ -0.03
VPS33A-204ENST00000540669 WASHC2AQ641Q2 1341 aa14.84□□□□□ -0.03
VPS33A-204ENST00000540669 MON2Q7Z3U7 1717 aa14.83□□□□□ -0.03
VPS33A-204ENST00000540669 AKAP12Q02952 1782 aa14.83□□□□□ -0.03
VPS33A-204ENST00000540669 SLC24A1O60721 1099 aa14.83□□□□□ -0.04
VPS33A-204ENST00000540669 KIF7Q2M1P5 1343 aa14.83□□□□□ -0.04
VPS33A-204ENST00000540669 MST1RQ04912 1400 aa14.83□□□□□ -0.04
VPS33A-204ENST00000540669 CD163L1Q9NR16 1453 aa14.82□□□□□ -0.04
VPS33A-204ENST00000540669 KIF1AQ12756 1690 aa14.81□□□□□ -0.04
VPS33A-204ENST00000540669 FBXO41Q8TF61 875 aa14.81□□□□□ -0.04
VPS33A-204ENST00000540669 POGKQ9P215 609 aa14.8□□□□□ -0.04
VPS33A-204ENST00000540669 PRR36Q9H6K5 1346 aa14.8□□□□□ -0.04
VPS33A-204ENST00000540669 NINLQ9Y2I6 1382 aa14.8□□□□□ -0.04
VPS33A-204ENST00000540669 WASLO00401 505 aaPredicted RBP14.79□□□□□ -0.04
VPS33A-204ENST00000540669 ATAD2Q6PL18 1390 aa14.79□□□□□ -0.04
VPS33A-204ENST00000540669 EVC2Q86UK5 1308 aa14.79□□□□□ -0.04
VPS33A-204ENST00000540669 MINK1Q8N4C8 1332 aaPredicted RBP14.79□□□□□ -0.04
VPS33A-204ENST00000540669 HIRIP3Q9BW71 556 aaPredicted RBP14.79□□□□□ -0.04
VPS33A-204ENST00000540669 ZNF316A6NFI3 1004 aaPredicted RBP14.78□□□□□ -0.04
VPS33A-204ENST00000540669 TMF1P82094 1093 aa14.78□□□□□ -0.04
VPS33A-204ENST00000540669 USP54Q70EL1 1684 aa14.77□□□□□ -0.04
VPS33A-204ENST00000540669 NHSL1Q5SYE7 1610 aa14.77□□□□□ -0.04
VPS33A-204ENST00000540669 PROSER2Q86WR7 435 aaPredicted RBP14.77□□□□□ -0.05
VPS33A-204ENST00000540669 RNF216Q9NWF9 866 aaPredicted RBP14.77□□□□□ -0.05
VPS33A-204ENST00000540669 C1orf167Q5SNV9 1468 aa14.76□□□□□ -0.05
VPS33A-204ENST00000540669 CPSF1Q10570 1443 aaKnown RBP14.76□□□□□ -0.05
VPS33A-204ENST00000540669 SAFB2Q14151 953 aaKnown RBP eCLIP14.76□□□□□ -0.05
VPS33A-204ENST00000540669 C19orf44Q9H6X5 657 aa14.76□□□□□ -0.05
VPS33A-204ENST00000540669 TRPM3Q9HCF6 1732 aaPredicted RBP14.75□□□□□ -0.05
VPS33A-204ENST00000540669 MSH6P52701 1360 aa14.75□□□□□ -0.05
VPS33A-204ENST00000540669 POLR3AO14802 1390 aaPredicted RBP14.74□□□□□ -0.05
VPS33A-204ENST00000540669 CDCA8Q53HL2 280 aa14.74□□□□□ -0.05
VPS33A-204ENST00000540669 CDK19Q9BWU1 502 aa14.74□□□□□ -0.05
VPS33A-204ENST00000540669 SSH2Q76I76 1423 aa14.74□□□□□ -0.05
VPS33A-204ENST00000540669 TOM1O60784 492 aa14.73□□□□□ -0.05
VPS33A-204ENST00000540669 PPIP5K1Q6PFW1 1433 aa14.73□□□□□ -0.05
VPS33A-204ENST00000540669 ANKRD26Q9UPS8 1709 aa14.72□□□□□ -0.05
VPS33A-204ENST00000540669 MARF1Q9Y4F3 1742 aaKnown RBP14.72□□□□□ -0.05
VPS33A-204ENST00000540669 RBM33Q96EV2 1170 aaKnown RBP14.72□□□□□ -0.05
VPS33A-204ENST00000540669 ANKRD36BQ8N2N9 1353 aa14.72□□□□□ -0.05
VPS33A-204ENST00000540669 AHDC1Q5TGY3 1603 aaPredicted RBP14.71□□□□□ -0.05
VPS33A-204ENST00000540669 UBAP1LF5GYI3 381 aa14.71□□□□□ -0.05
VPS33A-204ENST00000540669 CABP2Q9NPB3 220 aa14.71□□□□□ -0.05
VPS33A-204ENST00000540669 A0A1W2PP64 1363 aa14.71□□□□□ -0.06
VPS33A-204ENST00000540669 PLEKHG3A1L390 1219 aa14.7□□□□□ -0.06
VPS33A-204ENST00000540669 ILDR1Q86SU0 546 aaPredicted RBP14.7□□□□□ -0.06
VPS33A-204ENST00000540669 C14orf37Q86TY3 774 aa14.7□□□□□ -0.06
VPS33A-204ENST00000540669 KIF20BQ96Q89 1820 aa14.7□□□□□ -0.06
VPS33A-204ENST00000540669 ALS2Q96Q42 1657 aa14.7□□□□□ -0.06
VPS33A-204ENST00000540669 ROBO1Q9Y6N7 1651 aa14.7□□□□□ -0.06
VPS33A-204ENST00000540669 CADPS2Q86UW7 1296 aa14.69□□□□□ -0.06
VPS33A-204ENST00000540669 NUDT16Q96DE0 195 aaKnown RBP14.69□□□□□ -0.06
VPS33A-204ENST00000540669 CCDC61Q9Y6R9 512 aa14.69□□□□□ -0.06
VPS33A-204ENST00000540669 CRYBG1Q9Y4K1 1723 aa14.69□□□□□ -0.06
VPS33A-204ENST00000540669 PXDNQ92626 1479 aa14.69□□□□□ -0.06
VPS33A-204ENST00000540669 PIK3C2AO00443 1686 aa14.68□□□□□ -0.06
VPS33A-204ENST00000540669 USP6P35125 1406 aa14.67□□□□□ -0.06
VPS33A-204ENST00000540669 SRPK2P78362 688 aaKnown RBP14.67□□□□□ -0.06
VPS33A-204ENST00000540669 EDC4Q6P2E9 1401 aaKnown RBP14.66□□□□□ -0.06
VPS33A-204ENST00000540669 MED1Q15648 1581 aaPredicted RBP14.66□□□□□ -0.06
VPS33A-204ENST00000540669 BRD4O60885 1362 aaPredicted RBP14.66□□□□□ -0.06
VPS33A-204ENST00000540669 NPC1L1Q9UHC9 1359 aa14.66□□□□□ -0.06
VPS33A-204ENST00000540669 HOXD11P31277 338 aaPredicted RBP14.66□□□□□ -0.06
VPS33A-204ENST00000540669 PER1O15534 1290 aaPredicted RBP14.65□□□□□ -0.06
VPS33A-204ENST00000540669 COL16A1Q07092 1604 aaPredicted RBP14.65□□□□□ -0.06
VPS33A-204ENST00000540669 SLC12A5Q9H2X9 1139 aa14.64□□□□□ -0.07
VPS33A-204ENST00000540669 ATF3P18847 181 aa14.63□□□□□ -0.07
VPS33A-204ENST00000540669 ABCA3Q99758 1704 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms