RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-212ENST00000540304 PTPRMP28827 1452 aa12.95□□□□□ -0.34
CLIP1-212ENST00000540304 SETD1AO15047 1707 aaKnown RBP12.95□□□□□ -0.34
CLIP1-212ENST00000540304 IRX6P78412 446 aaPredicted RBP12.95□□□□□ -0.34
CLIP1-212ENST00000540304 EVC2Q86UK5 1308 aa12.95□□□□□ -0.34
CLIP1-212ENST00000540304 INSRP06213 1382 aa12.94□□□□□ -0.34
CLIP1-212ENST00000540304 TNRQ92752 1358 aa12.94□□□□□ -0.34
CLIP1-212ENST00000540304 PPP2R1AP30153 589 aa12.93□□□□□ -0.34
CLIP1-212ENST00000540304 CARD14Q9BXL6 1004 aa12.93□□□□□ -0.34
CLIP1-212ENST00000540304 STK26Q9P289 416 aa12.93□□□□□ -0.34
CLIP1-212ENST00000540304 USP32Q8NFA0 1604 aa12.93□□□□□ -0.34
CLIP1-212ENST00000540304 UBR1Q8IWV7 1749 aa12.92□□□□□ -0.34
CLIP1-212ENST00000540304 SMG6Q86US8 1419 aaKnown RBP12.92□□□□□ -0.34
CLIP1-212ENST00000540304 NRXN3Q9Y4C0 1643 aa12.91□□□□□ -0.34
CLIP1-212ENST00000540304 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.91□□□□□ -0.34
CLIP1-212ENST00000540304 DLC1Q96QB1 1528 aa12.91□□□□□ -0.34
CLIP1-212ENST00000540304 BLMP54132 1417 aaPredicted RBP12.91□□□□□ -0.34
CLIP1-212ENST00000540304 TRHP20396 242 aaPredicted RBP12.91□□□□□ -0.34
CLIP1-212ENST00000540304 NSD3Q9BZ95 1437 aa12.9□□□□□ -0.34
CLIP1-212ENST00000540304 KLHL34Q8N239 644 aa12.9□□□□□ -0.34
CLIP1-212ENST00000540304 SLC12A5Q9H2X9 1139 aa12.9□□□□□ -0.34
CLIP1-212ENST00000540304 FER1L4A9Z1Z3 1794 aa12.9□□□□□ -0.34
CLIP1-212ENST00000540304 PRAM1Q96QH2 718 aa12.89□□□□□ -0.35
CLIP1-212ENST00000540304 C3P01024 1663 aa12.89□□□□□ -0.35
CLIP1-212ENST00000540304 HDGFP51858 240 aaKnown RBP12.89□□□□□ -0.35
CLIP1-212ENST00000540304 SAFB2Q14151 953 aaKnown RBP eCLIP12.89□□□□□ -0.35
CLIP1-212ENST00000540304 NINLQ9Y2I6 1382 aa12.89□□□□□ -0.35
CLIP1-212ENST00000540304 NLRP1Q9C000 1473 aa12.89□□□□□ -0.35
CLIP1-212ENST00000540304 POGKQ9P215 609 aa12.88□□□□□ -0.35
CLIP1-212ENST00000540304 ANKRD36BQ8N2N9 1353 aa12.88□□□□□ -0.35
CLIP1-212ENST00000540304 NUDCQ9Y266 331 aa12.88□□□□□ -0.35
CLIP1-212ENST00000540304 CABP2Q9NPB3 220 aa12.87□□□□□ -0.35
CLIP1-212ENST00000540304 ATAD2Q6PL18 1390 aa12.87□□□□□ -0.35
CLIP1-212ENST00000540304 TMEM2Q9UHN6 1383 aa12.87□□□□□ -0.35
CLIP1-212ENST00000540304 KNDC1Q76NI1 1749 aa12.86□□□□□ -0.35
CLIP1-212ENST00000540304 MINK1Q8N4C8 1332 aaPredicted RBP12.86□□□□□ -0.35
CLIP1-212ENST00000540304 SRPK2P78362 688 aaKnown RBP12.86□□□□□ -0.35
CLIP1-212ENST00000540304 ABCC11Q96J66 1382 aa12.86□□□□□ -0.35
CLIP1-212ENST00000540304 WDR43Q15061 677 aaKnown RBP eCLIP12.85□□□□□ -0.35
CLIP1-212ENST00000540304 CGNL1Q0VF96 1302 aa12.85□□□□□ -0.35
CLIP1-212ENST00000540304 NSD2O96028 1365 aa12.84□□□□□ -0.35
CLIP1-212ENST00000540304 ERICH6BQ5W0A0 696 aa12.84□□□□□ -0.35
CLIP1-212ENST00000540304 PDE3BQ13370 1112 aa12.83□□□□□ -0.35
CLIP1-212ENST00000540304 ADAMTS8Q9UP79 889 aa12.83□□□□□ -0.35
CLIP1-212ENST00000540304 METP08581 1390 aa12.83□□□□□ -0.36
CLIP1-212ENST00000540304 CEBPAP49715 358 aaPredicted RBP12.82□□□□□ -0.36
CLIP1-212ENST00000540304 MORC1Q86VD1 984 aa12.82□□□□□ -0.36
CLIP1-212ENST00000540304 TECPR2O15040 1411 aa12.82□□□□□ -0.36
CLIP1-212ENST00000540304 A0A1W2PP64 1363 aa12.82□□□□□ -0.36
CLIP1-212ENST00000540304 CPS1P31327 1500 aa12.82□□□□□ -0.36
CLIP1-212ENST00000540304 POLR3AO14802 1390 aaPredicted RBP12.81□□□□□ -0.36
CLIP1-212ENST00000540304 PLEKHH1Q9ULM0 1364 aa12.81□□□□□ -0.36
CLIP1-212ENST00000540304 CDK19Q9BWU1 502 aa12.81□□□□□ -0.36
CLIP1-212ENST00000540304 PLEKHG1Q9ULL1 1385 aa12.81□□□□□ -0.36
CLIP1-212ENST00000540304 FAM135BQ49AJ0 1406 aa12.8□□□□□ -0.36
CLIP1-212ENST00000540304 ANKRD26Q9UPS8 1709 aa12.8□□□□□ -0.36
CLIP1-212ENST00000540304 SLIT1O75093 1534 aa12.8□□□□□ -0.36
CLIP1-212ENST00000540304 WAPLQ7Z5K2 1190 aa12.8□□□□□ -0.36
CLIP1-212ENST00000540304 TERF2IPQ9NYB0 399 aa12.8□□□□□ -0.36
CLIP1-212ENST00000540304 CD163L1Q9NR16 1453 aa12.8□□□□□ -0.36
CLIP1-212ENST00000540304 DEKP35659 375 aaKnown RBP12.79□□□□□ -0.36
CLIP1-212ENST00000540304 ADAMTS13Q76LX8 1427 aa12.79□□□□□ -0.36
CLIP1-212ENST00000540304 SIRT1Q96EB6 747 aa12.79□□□□□ -0.36
CLIP1-212ENST00000540304 ARHGAP23Q9P227 1491 aa12.79□□□□□ -0.36
CLIP1-212ENST00000540304 NCBP3Q53F19 620 aaKnown RBP12.78□□□□□ -0.36
CLIP1-212ENST00000540304 SHPRHQ149N8 1683 aa12.78□□□□□ -0.36
CLIP1-212ENST00000540304 RNF123Q5XPI4 1314 aa12.78□□□□□ -0.36
CLIP1-212ENST00000540304 PDE4CQ08493 712 aa12.78□□□□□ -0.36
CLIP1-212ENST00000540304 PDIA4P13667 645 aaKnown RBP12.77□□□□□ -0.36
CLIP1-212ENST00000540304 ATP7BP35670 1465 aa12.77□□□□□ -0.36
CLIP1-212ENST00000540304 LTKP29376 864 aa12.77□□□□□ -0.37
CLIP1-212ENST00000540304 HDGFL2Q7Z4V5 671 aaPredicted RBP12.77□□□□□ -0.37
CLIP1-212ENST00000540304 KIF20BQ96Q89 1820 aa12.77□□□□□ -0.37
CLIP1-212ENST00000540304 MED14O60244 1454 aa12.77□□□□□ -0.37
CLIP1-212ENST00000540304 TXNDC2Q86VQ3 553 aa12.76□□□□□ -0.37
CLIP1-212ENST00000540304 EID1Q9Y6B2 187 aa12.76□□□□□ -0.37
CLIP1-212ENST00000540304 TNNT2P45379 298 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-212ENST00000540304 RIMS1Q86UR5 1692 aaKnown RBP12.75□□□□□ -0.37
CLIP1-212ENST00000540304 WASLO00401 505 aaPredicted RBP12.75□□□□□ -0.37
CLIP1-212ENST00000540304 CABP1Q9NZU7 370 aa12.75□□□□□ -0.37
CLIP1-212ENST00000540304 PIAS4Q8N2W9 510 aaPredicted RBP12.75□□□□□ -0.37
CLIP1-212ENST00000540304 CDCA7LQ96GN5 454 aa12.74□□□□□ -0.37
CLIP1-212ENST00000540304 CFAP53Q96M91 514 aa12.74□□□□□ -0.37
CLIP1-212ENST00000540304 ADGRB2O60241 1585 aa12.74□□□□□ -0.37
CLIP1-212ENST00000540304 THEMISQ8N1K5 641 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-212ENST00000540304 PPP4R2Q9NY27 417 aa12.74□□□□□ -0.37
CLIP1-212ENST00000540304 DIP2AQ14689 1571 aa12.73□□□□□ -0.37
CLIP1-212ENST00000540304 ROBO2Q9HCK4 1378 aa12.73□□□□□ -0.37
CLIP1-212ENST00000540304 CEP170BQ9Y4F5 1589 aaPredicted RBP12.73□□□□□ -0.37
CLIP1-212ENST00000540304 MTHFSP49914 203 aa12.73□□□□□ -0.37
CLIP1-212ENST00000540304 ZNF521Q96K83 1311 aa12.73□□□□□ -0.37
CLIP1-212ENST00000540304 CCDC146Q8IYE0 955 aa12.73□□□□□ -0.37
CLIP1-212ENST00000540304 FYB1O15117 783 aa12.72□□□□□ -0.37
CLIP1-212ENST00000540304 GGNBP2Q9H3C7 697 aa12.72□□□□□ -0.37
CLIP1-212ENST00000540304 RCAN3Q9UKA8 241 aa12.72□□□□□ -0.37
CLIP1-212ENST00000540304 PPIP5K1Q6PFW1 1433 aa12.72□□□□□ -0.37
CLIP1-212ENST00000540304 NGEFQ8N5V2 710 aa12.72□□□□□ -0.37
CLIP1-212ENST00000540304 CDC42BPGQ6DT37 1551 aa12.71□□□□□ -0.37
CLIP1-212ENST00000540304 DNAJC5Q9H3Z4 198 aa12.71□□□□□ -0.37
CLIP1-212ENST00000540304 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms