RNA–Protein interactions for RNA: ENST00000539548.6

CDH13-204, Transcript of cadherin 13, humanhuman

TSL 2

Gene CDH13, Length 2,199 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-204ENST00000539548 PHF23Q9BUL5 403 aaPredicted RBP12.45□□□□□ -0.42
CDH13-204ENST00000539548 ZC3H13Q5T200 1668 aaKnown RBP12.44□□□□□ -0.42
CDH13-204ENST00000539548 PANK1Q8TE04 598 aa12.44□□□□□ -0.42
CDH13-204ENST00000539548 LMTK2Q8IWU2 1503 aa12.43□□□□□ -0.42
CDH13-204ENST00000539548 CANXP27824 592 aaKnown RBP12.43□□□□□ -0.42
CDH13-204ENST00000539548 MORC1Q86VD1 984 aa12.43□□□□□ -0.42
CDH13-204ENST00000539548 WDR63Q8IWG1 891 aa12.43□□□□□ -0.42
CDH13-204ENST00000539548 COG6Q9Y2V7 657 aa12.43□□□□□ -0.42
CDH13-204ENST00000539548 USP32Q8NFA0 1604 aa12.43□□□□□ -0.42
CDH13-204ENST00000539548 FRAT2O75474 233 aaPredicted RBP12.43□□□□□ -0.42
CDH13-204ENST00000539548 RARSP54136 660 aaKnown RBP12.43□□□□□ -0.42
CDH13-204ENST00000539548 NCBP3Q53F19 620 aaKnown RBP12.43□□□□□ -0.42
CDH13-204ENST00000539548 PMFBP1Q8TBY8 1022 aa12.43□□□□□ -0.42
CDH13-204ENST00000539548 ZMYM3Q14202 1370 aa12.43□□□□□ -0.42
CDH13-204ENST00000539548 PPRC1Q5VV67 1664 aaKnown RBP12.42□□□□□ -0.42
CDH13-204ENST00000539548 NSD3Q9BZ95 1437 aa12.42□□□□□ -0.42
CDH13-204ENST00000539548 ADGRL1O94910 1474 aa12.42□□□□□ -0.42
CDH13-204ENST00000539548 IQSEC2Q5JU85 1478 aa12.42□□□□□ -0.42
CDH13-204ENST00000539548 ADGRB3O60242 1522 aa12.42□□□□□ -0.42
CDH13-204ENST00000539548 CCDC27Q2M243 656 aa12.42□□□□□ -0.42
CDH13-204ENST00000539548 TCP11L2Q8N4U5 519 aa12.41□□□□□ -0.42
CDH13-204ENST00000539548 QRICH2Q9H0J4 1663 aa12.41□□□□□ -0.42
CDH13-204ENST00000539548 PPLO60437 1756 aa12.41□□□□□ -0.42
CDH13-204ENST00000539548 NOS1P29475 1434 aa12.4□□□□□ -0.42
CDH13-204ENST00000539548 C14orf93Q9H972 538 aaKnown RBP12.4□□□□□ -0.42
CDH13-204ENST00000539548 KIDINS220Q9ULH0 1771 aa12.4□□□□□ -0.42
CDH13-204ENST00000539548 SEC24BO95487 1268 aa12.4□□□□□ -0.42
CDH13-204ENST00000539548 BECN1Q14457 450 aa12.4□□□□□ -0.42
CDH13-204ENST00000539548 RTN4Q9NQC3 1192 aaKnown RBP12.4□□□□□ -0.42
CDH13-204ENST00000539548 BRPF3Q9ULD4 1205 aa12.4□□□□□ -0.42
CDH13-204ENST00000539548 NLRP1Q9C000 1473 aa12.39□□□□□ -0.43
CDH13-204ENST00000539548 PUS7Q96PZ0 661 aaKnown RBP12.39□□□□□ -0.43
CDH13-204ENST00000539548 SLC12A5Q9H2X9 1139 aa12.39□□□□□ -0.43
CDH13-204ENST00000539548 ZNF518AQ6AHZ1 1483 aa12.38□□□□□ -0.43
CDH13-204ENST00000539548 ADGRB1O14514 1584 aa12.38□□□□□ -0.43
CDH13-204ENST00000539548 NEUROD2Q15784 382 aa12.38□□□□□ -0.43
CDH13-204ENST00000539548 PCDHB15Q9Y5E8 787 aa12.38□□□□□ -0.43
CDH13-204ENST00000539548 CFAP53Q96M91 514 aa12.37□□□□□ -0.43
CDH13-204ENST00000539548 RRP7AQ9Y3A4 280 aaKnown RBP12.37□□□□□ -0.43
CDH13-204ENST00000539548 RPGRIP1LQ68CZ1 1315 aa12.37□□□□□ -0.43
CDH13-204ENST00000539548 MTHFSP49914 203 aa12.37□□□□□ -0.43
CDH13-204ENST00000539548 TRAK1Q9UPV9 953 aa12.37□□□□□ -0.43
CDH13-204ENST00000539548 RLBP1P12271 317 aa12.36□□□□□ -0.43
CDH13-204ENST00000539548 RWDD1Q9H446 243 aaPredicted RBP12.36□□□□□ -0.43
CDH13-204ENST00000539548 TNNT2P45379 298 aaPredicted RBP12.36□□□□□ -0.43
CDH13-204ENST00000539548 MYH16Q9H6N6 1097 aa12.36□□□□□ -0.43
CDH13-204ENST00000539548 ANO8Q9HCE9 1232 aaPredicted RBP12.36□□□□□ -0.43
CDH13-204ENST00000539548 PDZRN3Q9UPQ7 1066 aa12.36□□□□□ -0.43
CDH13-204ENST00000539548 NSD2O96028 1365 aa12.35□□□□□ -0.43
CDH13-204ENST00000539548 UPF2Q9HAU5 1272 aaKnown RBP12.35□□□□□ -0.43
CDH13-204ENST00000539548 CT47B1P0C2W7 299 aaPredicted RBP12.34□□□□□ -0.43
CDH13-204ENST00000539548 CHGAP10645 457 aaKnown RBP12.34□□□□□ -0.43
CDH13-204ENST00000539548 TBC1D32Q96NH3 1257 aa12.34□□□□□ -0.43
CDH13-204ENST00000539548 TNNQ9UQP3 1299 aa12.34□□□□□ -0.43
CDH13-204ENST00000539548 KIF13AQ9H1H9 1805 aa12.34□□□□□ -0.43
CDH13-204ENST00000539548 ANTXR1Q9H6X2 564 aa12.33□□□□□ -0.44
CDH13-204ENST00000539548 ADGRB2O60241 1585 aa12.33□□□□□ -0.44
CDH13-204ENST00000539548 CFAP65Q6ZU64 1925 aaKnown RBP12.33□□□□□ -0.44
CDH13-204ENST00000539548 NPATQ14207 1427 aa12.33□□□□□ -0.44
CDH13-204ENST00000539548 ANKRD36BQ8N2N9 1353 aa12.32□□□□□ -0.44
CDH13-204ENST00000539548 MVPQ14764 893 aaKnown RBP12.32□□□□□ -0.44
CDH13-204ENST00000539548 TMEM132EQ6IEE7 984 aa12.32□□□□□ -0.44
CDH13-204ENST00000539548 ZKSCAN2Q63HK3 967 aa12.32□□□□□ -0.44
CDH13-204ENST00000539548 EVC2Q86UK5 1308 aa12.31□□□□□ -0.44
CDH13-204ENST00000539548 BCL2L13Q9BXK5 485 aa12.31□□□□□ -0.44
CDH13-204ENST00000539548 ARHGEF28Q8N1W1 1705 aaKnown RBP12.31□□□□□ -0.44
CDH13-204ENST00000539548 GLI2P10070 1586 aa12.31□□□□□ -0.44
CDH13-204ENST00000539548 ASXL2Q76L83 1435 aa12.3□□□□□ -0.44
CDH13-204ENST00000539548 U2AF1L5P0DN76 240 aaPredicted RBP12.3□□□□□ -0.44
CDH13-204ENST00000539548 U2AF1Q01081 240 aaKnown RBP eCLIP12.3□□□□□ -0.44
CDH13-204ENST00000539548 DZIP1LQ8IYY4 767 aaKnown RBP12.3□□□□□ -0.44
CDH13-204ENST00000539548 TULP4Q9NRJ4 1543 aa12.3□□□□□ -0.44
CDH13-204ENST00000539548 TBC1D2Q9BYX2 928 aa12.29□□□□□ -0.44
CDH13-204ENST00000539548 SLKQ9H2G2 1235 aaPredicted RBP12.29□□□□□ -0.44
CDH13-204ENST00000539548 POGKQ9P215 609 aa12.29□□□□□ -0.44
CDH13-204ENST00000539548 HECW2Q9P2P5 1572 aa12.29□□□□□ -0.44
CDH13-204ENST00000539548 MLH3Q9UHC1 1453 aa12.28□□□□□ -0.44
CDH13-204ENST00000539548 FRMPD1Q5SYB0 1578 aa12.28□□□□□ -0.44
CDH13-204ENST00000539548 VGFO15240 615 aaPredicted RBP12.28□□□□□ -0.44
CDH13-204ENST00000539548 HDAC1Q13547 482 aaPredicted RBP12.28□□□□□ -0.44
CDH13-204ENST00000539548 FAM43AQ8N2R8 423 aa12.28□□□□□ -0.44
CDH13-204ENST00000539548 PIK3C2BO00750 1634 aa12.27□□□□□ -0.44
CDH13-204ENST00000539548 CAMSAP1Q5T5Y3 1602 aa12.27□□□□□ -0.44
CDH13-204ENST00000539548 FTSJ3Q8IY81 847 aaKnown RBP12.27□□□□□ -0.45
CDH13-204ENST00000539548 PLEKHF1Q96S99 279 aa12.27□□□□□ -0.45
CDH13-204ENST00000539548 ABCC3O15438 1527 aa12.27□□□□□ -0.45
CDH13-204ENST00000539548 CFAP74Q9C0B2 1584 aa12.27□□□□□ -0.45
CDH13-204ENST00000539548 IL16Q14005 1332 aa12.26□□□□□ -0.45
CDH13-204ENST00000539548 TMPOP42166 694 aaKnown RBP12.26□□□□□ -0.45
CDH13-204ENST00000539548 EXOSC9Q06265 439 aaKnown RBP12.26□□□□□ -0.45
CDH13-204ENST00000539548 NEXMIFQ5QGS0 1516 aa12.26□□□□□ -0.45
CDH13-204ENST00000539548 GGT6Q6P531 493 aa12.26□□□□□ -0.45
CDH13-204ENST00000539548 POGZQ7Z3K3 1410 aa12.26□□□□□ -0.45
CDH13-204ENST00000539548 DDX19BQ9UMR2 479 aa12.26□□□□□ -0.45
CDH13-204ENST00000539548 ABCC11Q96J66 1382 aa12.25□□□□□ -0.45
CDH13-204ENST00000539548 L1TD1Q5T7N2 865 aaKnown RBP12.25□□□□□ -0.45
CDH13-204ENST00000539548 SMC4Q9NTJ3 1288 aa12.25□□□□□ -0.45
CDH13-204ENST00000539548 TRIM35Q9UPQ4 493 aa12.25□□□□□ -0.45
CDH13-204ENST00000539548 SIGLEC1Q9BZZ2 1709 aa12.25□□□□□ -0.45
CDH13-204ENST00000539548 COL3A1P02461 1466 aaPredicted RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms