RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 SMC4Q9NTJ3 1288 aa14.25□□□□□ -0.13
SYNE1-237ENST00000539504 NSD3Q9BZ95 1437 aa14.25□□□□□ -0.13
SYNE1-237ENST00000539504 WDR63Q8IWG1 891 aa14.25□□□□□ -0.13
SYNE1-237ENST00000539504 DZIP1LQ8IYY4 767 aaKnown RBP14.25□□□□□ -0.13
SYNE1-237ENST00000539504 MADDQ8WXG6 1647 aa14.25□□□□□ -0.13
SYNE1-237ENST00000539504 RNF17Q9BXT8 1623 aaKnown RBP14.25□□□□□ -0.13
SYNE1-237ENST00000539504 HSCBQ8IWL3 235 aa14.24□□□□□ -0.13
SYNE1-237ENST00000539504 MVPQ14764 893 aaKnown RBP14.24□□□□□ -0.13
SYNE1-237ENST00000539504 TSR2Q969E8 191 aaKnown RBP14.24□□□□□ -0.13
SYNE1-237ENST00000539504 CHMP5Q9NZZ3 219 aa14.24□□□□□ -0.13
SYNE1-237ENST00000539504 U2SURPO15042 1029 aaKnown RBP14.24□□□□□ -0.13
SYNE1-237ENST00000539504 SENP3Q9H4L4 574 aaPredicted RBP14.24□□□□□ -0.13
SYNE1-237ENST00000539504 XRCC6P12956 609 aaKnown RBP eCLIP14.23□□□□□ -0.13
SYNE1-237ENST00000539504 PLXNC1O60486 1568 aa14.23□□□□□ -0.13
SYNE1-237ENST00000539504 TRAK2O60296 914 aa14.23□□□□□ -0.13
SYNE1-237ENST00000539504 PANK2Q9BZ23 570 aa14.23□□□□□ -0.13
SYNE1-237ENST00000539504 PLCH2O75038 1416 aa14.22□□□□□ -0.13
SYNE1-237ENST00000539504 TMEM132EQ6IEE7 984 aa14.22□□□□□ -0.13
SYNE1-237ENST00000539504 ERVK-7P63135 1459 aa14.22□□□□□ -0.13
SYNE1-237ENST00000539504 PNNQ9H307 717 aaKnown RBP14.22□□□□□ -0.13
SYNE1-237ENST00000539504 UBE2Q2Q8WVN8 375 aa14.22□□□□□ -0.13
SYNE1-237ENST00000539504 IQGAP1P46940 1657 aa14.21□□□□□ -0.13
SYNE1-237ENST00000539504 HSP90AA1P07900 732 aaKnown RBP14.2□□□□□ -0.14
SYNE1-237ENST00000539504 EXOSC9Q06265 439 aaKnown RBP14.2□□□□□ -0.14
SYNE1-237ENST00000539504 SAFB2Q14151 953 aaKnown RBP eCLIP14.2□□□□□ -0.14
SYNE1-237ENST00000539504 KDM5AP29375 1690 aaKnown RBP14.19□□□□□ -0.14
SYNE1-237ENST00000539504 NLRP1Q9C000 1473 aa14.19□□□□□ -0.14
SYNE1-237ENST00000539504 TRPM2O94759 1503 aa14.19□□□□□ -0.14
SYNE1-237ENST00000539504 NUTM2DQ5VT03 806 aaPredicted RBP14.18□□□□□ -0.14
SYNE1-237ENST00000539504 PTPRTO14522 1441 aa14.18□□□□□ -0.14
SYNE1-237ENST00000539504 HSP90AB1P08238 724 aaKnown RBP14.18□□□□□ -0.14
SYNE1-237ENST00000539504 DDX19BQ9UMR2 479 aa14.17□□□□□ -0.14
SYNE1-237ENST00000539504 FOXD4L1Q9NU39 408 aa14.17□□□□□ -0.14
SYNE1-237ENST00000539504 CLTCL1P53675 1640 aa14.16□□□□□ -0.14
SYNE1-237ENST00000539504 TRIM27P14373 513 aa14.16□□□□□ -0.14
SYNE1-237ENST00000539504 LNPKQ9C0E8 428 aa14.16□□□□□ -0.14
SYNE1-237ENST00000539504 SSH1Q8WYL5 1049 aa14.16□□□□□ -0.14
SYNE1-237ENST00000539504 DDX11L8A8MPP1 907 aa14.16□□□□□ -0.14
SYNE1-237ENST00000539504 MRE11P49959 708 aa14.15□□□□□ -0.14
SYNE1-237ENST00000539504 NOB1Q9ULX3 412 aaKnown RBP14.15□□□□□ -0.14
SYNE1-237ENST00000539504 MYOM1P52179 1685 aa14.15□□□□□ -0.14
SYNE1-237ENST00000539504 CCDC27Q2M243 656 aa14.15□□□□□ -0.14
SYNE1-237ENST00000539504 TRIM44Q96DX7 344 aaPredicted RBP14.14□□□□□ -0.15
SYNE1-237ENST00000539504 PHF23Q9BUL5 403 aaPredicted RBP14.14□□□□□ -0.15
SYNE1-237ENST00000539504 UGGT1Q9NYU2 1555 aa14.14□□□□□ -0.15
SYNE1-237ENST00000539504 ATF7IPQ6VMQ6 1270 aa14.14□□□□□ -0.15
SYNE1-237ENST00000539504 FSD2A1L4K1 749 aa14.13□□□□□ -0.15
SYNE1-237ENST00000539504 TMEM57Q8N5G2 664 aa14.13□□□□□ -0.15
SYNE1-237ENST00000539504 NOS1P29475 1434 aa14.13□□□□□ -0.15
SYNE1-237ENST00000539504 SPHKAPQ2M3C7 1700 aa14.13□□□□□ -0.15
SYNE1-237ENST00000539504 GGT6Q6P531 493 aa14.13□□□□□ -0.15
SYNE1-237ENST00000539504 GRPEL1Q9HAV7 217 aa14.13□□□□□ -0.15
SYNE1-237ENST00000539504 CABP2Q9NPB3 220 aa14.13□□□□□ -0.15
SYNE1-237ENST00000539504 ZMYM3Q14202 1370 aa14.12□□□□□ -0.15
SYNE1-237ENST00000539504 GGNBP2Q9H3C7 697 aa14.12□□□□□ -0.15
SYNE1-237ENST00000539504 HDAC1Q13547 482 aaPredicted RBP14.11□□□□□ -0.15
SYNE1-237ENST00000539504 IPO8O15397 1037 aaKnown RBP14.11□□□□□ -0.15
SYNE1-237ENST00000539504 TMPOP42166 694 aaKnown RBP14.11□□□□□ -0.15
SYNE1-237ENST00000539504 ABCC1P33527 1531 aa14.11□□□□□ -0.15
SYNE1-237ENST00000539504 GBP4Q96PP9 640 aa14.11□□□□□ -0.15
SYNE1-237ENST00000539504 EVC2Q86UK5 1308 aa14.11□□□□□ -0.15
SYNE1-237ENST00000539504 RIPK4P57078 832 aa14.1□□□□□ -0.15
SYNE1-237ENST00000539504 SRPK2P78362 688 aaKnown RBP14.1□□□□□ -0.15
SYNE1-237ENST00000539504 STK26Q9P289 416 aa14.1□□□□□ -0.15
SYNE1-237ENST00000539504 RTEL1-TNFRSF6BF6WH68 1400 aa14.1□□□□□ -0.15
SYNE1-237ENST00000539504 CT47B1P0C2W7 299 aaPredicted RBP14.1□□□□□ -0.15
SYNE1-237ENST00000539504 CLCN1P35523 988 aa14.09□□□□□ -0.15
SYNE1-237ENST00000539504 ANKRD45Q5TZF3 282 aa14.09□□□□□ -0.15
SYNE1-237ENST00000539504 TNPO1Q92973 898 aaKnown RBP14.09□□□□□ -0.15
SYNE1-237ENST00000539504 CEP152O94986 1710 aa14.09□□□□□ -0.15
SYNE1-237ENST00000539504 GLIPR1L2Q4G1C9 344 aa14.09□□□□□ -0.15
SYNE1-237ENST00000539504 ERCC6L2Q5T890 1561 aa14.09□□□□□ -0.15
SYNE1-237ENST00000539504 SMC5Q8IY18 1101 aa14.08□□□□□ -0.15
SYNE1-237ENST00000539504 C14orf93Q9H972 538 aaKnown RBP14.08□□□□□ -0.15
SYNE1-237ENST00000539504 SBNO2Q9Y2G9 1366 aa14.08□□□□□ -0.16
SYNE1-237ENST00000539504 VIRMAQ69YN4 1812 aaKnown RBP14.08□□□□□ -0.16
SYNE1-237ENST00000539504 ZNF518AQ6AHZ1 1483 aa14.08□□□□□ -0.16
SYNE1-237ENST00000539504 ESPNB1AK53 854 aa14.07□□□□□ -0.16
SYNE1-237ENST00000539504 CHD1LQ86WJ1 897 aa14.07□□□□□ -0.16
SYNE1-237ENST00000539504 C1orf115Q9H7X2 142 aa14.07□□□□□ -0.16
SYNE1-237ENST00000539504 IQSEC2Q5JU85 1478 aa14.07□□□□□ -0.16
SYNE1-237ENST00000539504 ABCA6Q8N139 1617 aa14.06□□□□□ -0.16
SYNE1-237ENST00000539504 MAP3K4Q9Y6R4 1608 aa14.06□□□□□ -0.16
SYNE1-237ENST00000539504 MYOM2P54296 1465 aa14.06□□□□□ -0.16
SYNE1-237ENST00000539504 KIF16BQ96L93 1317 aa14.06□□□□□ -0.16
SYNE1-237ENST00000539504 ZBTB40Q9NUA8 1239 aa14.06□□□□□ -0.16
SYNE1-237ENST00000539504 HSP90AA2PQ14568 343 aaPredicted RBP14.06□□□□□ -0.16
SYNE1-237ENST00000539504 TRIM35Q9UPQ4 493 aa14.06□□□□□ -0.16
SYNE1-237ENST00000539504 ZFYVE16Q7Z3T8 1539 aa14.05□□□□□ -0.16
SYNE1-237ENST00000539504 GOLGA6L22H0YM25 854 aa14.05□□□□□ -0.16
SYNE1-237ENST00000539504 ELL2O00472 640 aaPredicted RBP14.05□□□□□ -0.16
SYNE1-237ENST00000539504 NUCB1Q02818 461 aa14.05□□□□□ -0.16
SYNE1-237ENST00000539504 ANP32BQ92688 251 aaKnown RBP14.05□□□□□ -0.16
SYNE1-237ENST00000539504 TET3O43151 1660 aa14.04□□□□□ -0.16
SYNE1-237ENST00000539504 ZNF692Q9BU19 519 aaPredicted RBP14.04□□□□□ -0.16
SYNE1-237ENST00000539504 NCLP19338 710 aaKnown RBP14.03□□□□□ -0.16
SYNE1-237ENST00000539504 RBM25P49756 843 aaKnown RBP14.03□□□□□ -0.16
SYNE1-237ENST00000539504 DIAPH1O60610 1272 aaKnown RBP14.03□□□□□ -0.16
SYNE1-237ENST00000539504 FANCAO15360 1455 aa14.03□□□□□ -0.16
SYNE1-237ENST00000539504 SKOR2Q2VWA4 1001 aaPredicted RBP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms