RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 ANKRD36BQ8N2N9 1353 aa27.53■■■□□ 2
SMPDL3A-203ENST00000539041 KNDC1Q76NI1 1749 aa27.52■■■□□ 2
SMPDL3A-203ENST00000539041 NINLQ9Y2I6 1382 aa27.52■■■□□ 2
SMPDL3A-203ENST00000539041 SAFB2Q14151 953 aaKnown RBP eCLIP27.52■■■□□ 2
SMPDL3A-203ENST00000539041 ADAMTS8Q9UP79 889 aa27.51■■□□□ 1.99
SMPDL3A-203ENST00000539041 ANKRD26Q9UPS8 1709 aa27.51■■□□□ 1.99
SMPDL3A-203ENST00000539041 FER1L4A9Z1Z3 1794 aa27.51■■□□□ 1.99
SMPDL3A-203ENST00000539041 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.5■■□□□ 1.99
SMPDL3A-203ENST00000539041 PRAM1Q96QH2 718 aa27.5■■□□□ 1.99
SMPDL3A-203ENST00000539041 POGKQ9P215 609 aa27.5■■□□□ 1.99
SMPDL3A-203ENST00000539041 C3P01024 1663 aa27.49■■□□□ 1.99
SMPDL3A-203ENST00000539041 CABP2Q9NPB3 220 aa27.49■■□□□ 1.99
SMPDL3A-203ENST00000539041 RNF123Q5XPI4 1314 aa27.49■■□□□ 1.99
SMPDL3A-203ENST00000539041 SALL2Q9Y467 1007 aaPredicted RBP27.48■■□□□ 1.99
SMPDL3A-203ENST00000539041 SHPRHQ149N8 1683 aa27.47■■□□□ 1.99
SMPDL3A-203ENST00000539041 ATAD2Q6PL18 1390 aa27.47■■□□□ 1.99
SMPDL3A-203ENST00000539041 MINK1Q8N4C8 1332 aaPredicted RBP27.45■■□□□ 1.99
SMPDL3A-203ENST00000539041 NSD2O96028 1365 aa27.45■■□□□ 1.98
SMPDL3A-203ENST00000539041 CGNL1Q0VF96 1302 aa27.45■■□□□ 1.98
SMPDL3A-203ENST00000539041 POLR3AO14802 1390 aaPredicted RBP27.44■■□□□ 1.98
SMPDL3A-203ENST00000539041 SRPK2P78362 688 aaKnown RBP27.44■■□□□ 1.98
SMPDL3A-203ENST00000539041 MORC1Q86VD1 984 aa27.44■■□□□ 1.98
SMPDL3A-203ENST00000539041 PPP4R2Q9NY27 417 aa27.44■■□□□ 1.98
SMPDL3A-203ENST00000539041 KIF20BQ96Q89 1820 aa27.43■■□□□ 1.98
SMPDL3A-203ENST00000539041 HDGFP51858 240 aaKnown RBP27.43■■□□□ 1.98
SMPDL3A-203ENST00000539041 ABCC11Q96J66 1382 aa27.42■■□□□ 1.98
SMPDL3A-203ENST00000539041 NLRP1Q9C000 1473 aa27.41■■□□□ 1.98
SMPDL3A-203ENST00000539041 A0A1W2PP64 1363 aa27.4■■□□□ 1.98
SMPDL3A-203ENST00000539041 TMEM2Q9UHN6 1383 aa27.38■■□□□ 1.97
SMPDL3A-203ENST00000539041 CPS1P31327 1500 aa27.37■■□□□ 1.97
SMPDL3A-203ENST00000539041 CD163L1Q9NR16 1453 aa27.36■■□□□ 1.97
SMPDL3A-203ENST00000539041 CDCA7LQ96GN5 454 aa27.35■■□□□ 1.97
SMPDL3A-203ENST00000539041 CDK19Q9BWU1 502 aa27.35■■□□□ 1.97
SMPDL3A-203ENST00000539041 METP08581 1390 aa27.34■■□□□ 1.97
SMPDL3A-203ENST00000539041 PLEKHH1Q9ULM0 1364 aa27.34■■□□□ 1.97
SMPDL3A-203ENST00000539041 TERF2IPQ9NYB0 399 aa27.33■■□□□ 1.97
SMPDL3A-203ENST00000539041 TECPR2O15040 1411 aa27.33■■□□□ 1.97
SMPDL3A-203ENST00000539041 RCAN3Q9UKA8 241 aa27.32■■□□□ 1.96
SMPDL3A-203ENST00000539041 TRHP20396 242 aaPredicted RBP27.31■■□□□ 1.96
SMPDL3A-203ENST00000539041 MED14O60244 1454 aa27.31■■□□□ 1.96
SMPDL3A-203ENST00000539041 WAPLQ7Z5K2 1190 aa27.3■■□□□ 1.96
SMPDL3A-203ENST00000539041 FAM135BQ49AJ0 1406 aa27.3■■□□□ 1.96
SMPDL3A-203ENST00000539041 TSHZ2Q9NRE2 1034 aa27.3■■□□□ 1.96
SMPDL3A-203ENST00000539041 ATP7BP35670 1465 aa27.29■■□□□ 1.96
SMPDL3A-203ENST00000539041 ZNF521Q96K83 1311 aa27.29■■□□□ 1.96
SMPDL3A-203ENST00000539041 TNNT2P45379 298 aaPredicted RBP27.29■■□□□ 1.96
SMPDL3A-203ENST00000539041 CCDC146Q8IYE0 955 aa27.28■■□□□ 1.96
SMPDL3A-203ENST00000539041 HDGFL2Q7Z4V5 671 aaPredicted RBP27.27■■□□□ 1.96
SMPDL3A-203ENST00000539041 SIRT1Q96EB6 747 aa27.27■■□□□ 1.96
SMPDL3A-203ENST00000539041 RRP1P56182 461 aaKnown RBP27.27■■□□□ 1.96
SMPDL3A-203ENST00000539041 ADAMTS13Q76LX8 1427 aa27.26■■□□□ 1.95
SMPDL3A-203ENST00000539041 PLEKHG1Q9ULL1 1385 aa27.26■■□□□ 1.95
SMPDL3A-203ENST00000539041 CEBPAP49715 358 aaPredicted RBP27.26■■□□□ 1.95
SMPDL3A-203ENST00000539041 SLIT1O75093 1534 aa27.25■■□□□ 1.95
SMPDL3A-203ENST00000539041 CFAP53Q96M91 514 aa27.25■■□□□ 1.95
SMPDL3A-203ENST00000539041 ITSN1Q15811 1721 aa27.25■■□□□ 1.95
SMPDL3A-203ENST00000539041 AKAP12Q02952 1782 aa27.24■■□□□ 1.95
SMPDL3A-203ENST00000539041 MTHFSP49914 203 aa27.24■■□□□ 1.95
SMPDL3A-203ENST00000539041 NGEFQ8N5V2 710 aa27.24■■□□□ 1.95
SMPDL3A-203ENST00000539041 ARHGAP23Q9P227 1491 aa27.23■■□□□ 1.95
SMPDL3A-203ENST00000539041 MON2Q7Z3U7 1717 aa27.23■■□□□ 1.95
SMPDL3A-203ENST00000539041 APAF1O14727 1248 aa27.22■■□□□ 1.95
SMPDL3A-203ENST00000539041 GOLGA2Q08379 1002 aa27.22■■□□□ 1.95
SMPDL3A-203ENST00000539041 CABP1Q9NZU7 370 aa27.22■■□□□ 1.95
SMPDL3A-203ENST00000539041 TXNDC2Q86VQ3 553 aa27.21■■□□□ 1.95
SMPDL3A-203ENST00000539041 ADGRB2O60241 1585 aa27.21■■□□□ 1.95
SMPDL3A-203ENST00000539041 B4GALNT3Q6L9W6 998 aa27.2■■□□□ 1.95
SMPDL3A-203ENST00000539041 WASLO00401 505 aaPredicted RBP27.2■■□□□ 1.94
SMPDL3A-203ENST00000539041 GGNBP2Q9H3C7 697 aa27.19■■□□□ 1.94
SMPDL3A-203ENST00000539041 FYB1O15117 783 aa27.18■■□□□ 1.94
SMPDL3A-203ENST00000539041 LTKP29376 864 aa27.18■■□□□ 1.94
SMPDL3A-203ENST00000539041 RIMS1Q86UR5 1692 aaKnown RBP27.18■■□□□ 1.94
SMPDL3A-203ENST00000539041 CDC42BPGQ6DT37 1551 aa27.18■■□□□ 1.94
SMPDL3A-203ENST00000539041 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.18■■□□□ 1.94
SMPDL3A-203ENST00000539041 IQSEC2Q5JU85 1478 aa27.18■■□□□ 1.94
SMPDL3A-203ENST00000539041 DUSP27Q5VZP5 1158 aa27.17■■□□□ 1.94
SMPDL3A-203ENST00000539041 PPIP5K1Q6PFW1 1433 aa27.16■■□□□ 1.94
SMPDL3A-203ENST00000539041 MAP2P11137 1827 aaKnown RBP27.16■■□□□ 1.94
SMPDL3A-203ENST00000539041 SLFN5Q08AF3 891 aa27.15■■□□□ 1.94
SMPDL3A-203ENST00000539041 EID1Q9Y6B2 187 aa27.15■■□□□ 1.94
SMPDL3A-203ENST00000539041 DIP2AQ14689 1571 aa27.15■■□□□ 1.94
SMPDL3A-203ENST00000539041 COL3A1P02461 1466 aaPredicted RBP27.15■■□□□ 1.94
SMPDL3A-203ENST00000539041 RUNDC1Q96C34 613 aa27.14■■□□□ 1.94
SMPDL3A-203ENST00000539041 TOPAZ1Q8N9V7 1692 aa27.14■■□□□ 1.94
SMPDL3A-203ENST00000539041 CPSF1Q10570 1443 aaKnown RBP27.13■■□□□ 1.93
SMPDL3A-203ENST00000539041 TRMT2AQ8IZ69 625 aaKnown RBP27.12■■□□□ 1.93
SMPDL3A-203ENST00000539041 ROBO2Q9HCK4 1378 aa27.12■■□□□ 1.93
SMPDL3A-203ENST00000539041 EDC4Q6P2E9 1401 aaKnown RBP27.11■■□□□ 1.93
SMPDL3A-203ENST00000539041 PLPPR3Q6T4P5 718 aa27.1■■□□□ 1.93
SMPDL3A-203ENST00000539041 CEP170BQ9Y4F5 1589 aaPredicted RBP27.09■■□□□ 1.93
SMPDL3A-203ENST00000539041 NUDT16Q96DE0 195 aaKnown RBP27.09■■□□□ 1.93
SMPDL3A-203ENST00000539041 CCDC136Q96JN2 1154 aa27.09■■□□□ 1.93
SMPDL3A-203ENST00000539041 THEMISQ8N1K5 641 aaPredicted RBP27.08■■□□□ 1.93
SMPDL3A-203ENST00000539041 NKTRP30414 1462 aaKnown RBP27.08■■□□□ 1.93
SMPDL3A-203ENST00000539041 PTPRUQ92729 1446 aa27.08■■□□□ 1.93
SMPDL3A-203ENST00000539041 E9PSI1 815 aa27.07■■□□□ 1.92
SMPDL3A-203ENST00000539041 ZNF142P52746 1687 aaPredicted RBP27.05■■□□□ 1.92
SMPDL3A-203ENST00000539041 XRN1Q8IZH2 1706 aaKnown RBP27.05■■□□□ 1.92
SMPDL3A-203ENST00000539041 EXOC6Q8TAG9 804 aa27.04■■□□□ 1.92
SMPDL3A-203ENST00000539041 CCDC61Q9Y6R9 512 aa27.04■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 94.4 ms