RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 E9PSI1 815 aa11.47□□□□□ -0.57
SNHG1-209ENST00000538654 KDM4AO75164 1064 aa11.47□□□□□ -0.57
SNHG1-209ENST00000538654 TSPY4P0CV99 314 aa11.47□□□□□ -0.57
SNHG1-209ENST00000538654 TSPY10P0CW01 314 aa11.47□□□□□ -0.57
SNHG1-209ENST00000538654 PLXNC1O60486 1568 aa11.47□□□□□ -0.57
SNHG1-209ENST00000538654 KNSTRNQ9Y448 316 aa11.46□□□□□ -0.57
SNHG1-209ENST00000538654 FAM135AQ9P2D6 1515 aa11.46□□□□□ -0.57
SNHG1-209ENST00000538654 MCM4P33991 863 aa11.46□□□□□ -0.58
SNHG1-209ENST00000538654 CLUAP1Q96AJ1 413 aa11.46□□□□□ -0.58
SNHG1-209ENST00000538654 TBC1D32Q96NH3 1257 aa11.46□□□□□ -0.58
SNHG1-209ENST00000538654 IGHDP01880 384 aa11.45□□□□□ -0.58
SNHG1-209ENST00000538654 PMFBP1Q8TBY8 1022 aa11.45□□□□□ -0.58
SNHG1-209ENST00000538654 CCDC141Q6ZP82 1450 aa11.45□□□□□ -0.58
SNHG1-209ENST00000538654 NBPF1Q3BBV0 1214 aa11.45□□□□□ -0.58
SNHG1-209ENST00000538654 ARHGEF5Q12774 1597 aa11.45□□□□□ -0.58
SNHG1-209ENST00000538654 MYO5CQ9NQX4 1742 aa11.45□□□□□ -0.58
SNHG1-209ENST00000538654 PRDM16Q9HAZ2 1276 aa11.45□□□□□ -0.58
SNHG1-209ENST00000538654 GPBP1L1Q9HC44 474 aaPredicted RBP11.45□□□□□ -0.58
SNHG1-209ENST00000538654 SEC24BO95487 1268 aa11.44□□□□□ -0.58
SNHG1-209ENST00000538654 CDCA8Q53HL2 280 aa11.44□□□□□ -0.58
SNHG1-209ENST00000538654 GZF1Q9H116 711 aaPredicted RBP11.44□□□□□ -0.58
SNHG1-209ENST00000538654 A2MP01023 1474 aa11.44□□□□□ -0.58
SNHG1-209ENST00000538654 SYNMO15061 1565 aa11.44□□□□□ -0.58
SNHG1-209ENST00000538654 TBC1D2Q9BYX2 928 aa11.44□□□□□ -0.58
SNHG1-209ENST00000538654 CHMP5Q9NZZ3 219 aa11.44□□□□□ -0.58
SNHG1-209ENST00000538654 RNF17Q9BXT8 1623 aaKnown RBP11.43□□□□□ -0.58
SNHG1-209ENST00000538654 NPC1L1Q9UHC9 1359 aa11.43□□□□□ -0.58
SNHG1-209ENST00000538654 SYNJ2O15056 1496 aa11.43□□□□□ -0.58
SNHG1-209ENST00000538654 DDX11L8A8MPP1 907 aa11.43□□□□□ -0.58
SNHG1-209ENST00000538654 MYH16Q9H6N6 1097 aa11.43□□□□□ -0.58
SNHG1-209ENST00000538654 WDR7Q9Y4E6 1490 aa11.43□□□□□ -0.58
SNHG1-209ENST00000538654 ASXL1Q8IXJ9 1541 aa11.42□□□□□ -0.58
SNHG1-209ENST00000538654 CANXP27824 592 aaKnown RBP11.42□□□□□ -0.58
SNHG1-209ENST00000538654 TICAM2Q86XR7 235 aa11.42□□□□□ -0.58
SNHG1-209ENST00000538654 TRAK2O60296 914 aa11.42□□□□□ -0.58
SNHG1-209ENST00000538654 BCAR3O75815 825 aa11.42□□□□□ -0.58
SNHG1-209ENST00000538654 TPM2P07951 284 aa11.42□□□□□ -0.58
SNHG1-209ENST00000538654 MKRN3Q13064 507 aaKnown RBP11.41□□□□□ -0.58
SNHG1-209ENST00000538654 TMCO4Q5TGY1 634 aa11.41□□□□□ -0.58
SNHG1-209ENST00000538654 CENPJQ9HC77 1338 aaPredicted RBP11.41□□□□□ -0.58
SNHG1-209ENST00000538654 MAGI2Q86UL8 1455 aa11.41□□□□□ -0.58
SNHG1-209ENST00000538654 ESPNB1AK53 854 aa11.41□□□□□ -0.58
SNHG1-209ENST00000538654 PSMD1Q99460 953 aa11.41□□□□□ -0.58
SNHG1-209ENST00000538654 PANK2Q9BZ23 570 aa11.4□□□□□ -0.58
SNHG1-209ENST00000538654 GRPEL1Q9HAV7 217 aa11.4□□□□□ -0.58
SNHG1-209ENST00000538654 UNC13BO14795 1591 aa11.4□□□□□ -0.59
SNHG1-209ENST00000538654 TRIM44Q96DX7 344 aaPredicted RBP11.39□□□□□ -0.59
SNHG1-209ENST00000538654 PTMSP20962 102 aa11.39□□□□□ -0.59
SNHG1-209ENST00000538654 RGL3Q3MIN7 710 aa11.39□□□□□ -0.59
SNHG1-209ENST00000538654 APAF1O14727 1248 aa11.38□□□□□ -0.59
SNHG1-209ENST00000538654 IQGAP1P46940 1657 aa11.38□□□□□ -0.59
SNHG1-209ENST00000538654 RWDD1Q9H446 243 aaPredicted RBP11.38□□□□□ -0.59
SNHG1-209ENST00000538654 COG6Q9Y2V7 657 aa11.37□□□□□ -0.59
SNHG1-209ENST00000538654 PLEKHD1A6NEE1 506 aa11.37□□□□□ -0.59
SNHG1-209ENST00000538654 PDCL3Q9H2J4 239 aa11.37□□□□□ -0.59
SNHG1-209ENST00000538654 SPINK5Q9NQ38 1064 aaPredicted RBP11.37□□□□□ -0.59
SNHG1-209ENST00000538654 ATP10AO60312 1499 aa11.37□□□□□ -0.59
SNHG1-209ENST00000538654 PLB1Q6P1J6 1458 aa11.37□□□□□ -0.59
SNHG1-209ENST00000538654 PLA2R1Q13018 1463 aa11.36□□□□□ -0.59
SNHG1-209ENST00000538654 MAGI1Q96QZ7 1491 aaPredicted RBP11.36□□□□□ -0.59
SNHG1-209ENST00000538654 SCAPERQ9BY12 1400 aa11.36□□□□□ -0.59
SNHG1-209ENST00000538654 CCDC146Q8IYE0 955 aa11.36□□□□□ -0.59
SNHG1-209ENST00000538654 IQGAP3Q86VI3 1631 aa11.36□□□□□ -0.59
SNHG1-209ENST00000538654 SKOR2Q2VWA4 1001 aaPredicted RBP11.36□□□□□ -0.59
SNHG1-209ENST00000538654 PANK1Q8TE04 598 aa11.35□□□□□ -0.59
SNHG1-209ENST00000538654 HSCBQ8IWL3 235 aa11.35□□□□□ -0.59
SNHG1-209ENST00000538654 C22orf23Q9BZE7 217 aa11.35□□□□□ -0.59
SNHG1-209ENST00000538654 PDZRN3Q9UPQ7 1066 aa11.35□□□□□ -0.59
SNHG1-209ENST00000538654 GRIN2AQ12879 1464 aa11.35□□□□□ -0.59
SNHG1-209ENST00000538654 CARMIL2Q6F5E8 1435 aa11.34□□□□□ -0.59
SNHG1-209ENST00000538654 CIZ1Q9ULV3 898 aaPredicted RBP11.33□□□□□ -0.59
SNHG1-209ENST00000538654 MAST1Q9Y2H9 1570 aa11.33□□□□□ -0.6
SNHG1-209ENST00000538654 MYOM1P52179 1685 aa11.33□□□□□ -0.6
SNHG1-209ENST00000538654 STAC3Q96MF2 364 aa11.33□□□□□ -0.6
SNHG1-209ENST00000538654 GBP4Q96PP9 640 aa11.33□□□□□ -0.6
SNHG1-209ENST00000538654 KDM5AP29375 1690 aaKnown RBP11.33□□□□□ -0.6
SNHG1-209ENST00000538654 ABCA8O94911 1581 aa11.32□□□□□ -0.6
SNHG1-209ENST00000538654 NCOA3Q9Y6Q9 1424 aa11.32□□□□□ -0.6
SNHG1-209ENST00000538654 CNPY4Q8N129 248 aa11.32□□□□□ -0.6
SNHG1-209ENST00000538654 ATF5Q9Y2D1 282 aaPredicted RBP11.32□□□□□ -0.6
SNHG1-209ENST00000538654 SLC4A2P04920 1241 aa11.32□□□□□ -0.6
SNHG1-209ENST00000538654 HNRNPMP52272 730 aaKnown RBP eCLIP11.32□□□□□ -0.6
SNHG1-209ENST00000538654 TERF1P54274 439 aa11.32□□□□□ -0.6
SNHG1-209ENST00000538654 WWC1Q8IX03 1113 aa11.32□□□□□ -0.6
SNHG1-209ENST00000538654 MADDQ8WXG6 1647 aa11.32□□□□□ -0.6
SNHG1-209ENST00000538654 SCAF11Q99590 1463 aaKnown RBP11.32□□□□□ -0.6
SNHG1-209ENST00000538654 RTEL1-TNFRSF6BF6WH68 1400 aa11.31□□□□□ -0.6
SNHG1-209ENST00000538654 PCDHB15Q9Y5E8 787 aa11.31□□□□□ -0.6
SNHG1-209ENST00000538654 RARSP54136 660 aaKnown RBP11.31□□□□□ -0.6
SNHG1-209ENST00000538654 CCDC173Q0VFZ6 552 aa11.31□□□□□ -0.6
SNHG1-209ENST00000538654 ANP32BQ92688 251 aaKnown RBP11.31□□□□□ -0.6
SNHG1-209ENST00000538654 IFT140Q96RY7 1462 aa11.31□□□□□ -0.6
SNHG1-209ENST00000538654 ERBB4Q15303 1308 aa11.31□□□□□ -0.6
SNHG1-209ENST00000538654 SNX21Q969T3 373 aa11.3□□□□□ -0.6
SNHG1-209ENST00000538654 MAP7D2Q96T17 732 aa11.3□□□□□ -0.6
SNHG1-209ENST00000538654 SAMD9LQ8IVG5 1584 aa11.3□□□□□ -0.6
SNHG1-209ENST00000538654 POLR3AO14802 1390 aaPredicted RBP11.29□□□□□ -0.6
SNHG1-209ENST00000538654 PREX2Q70Z35 1606 aa11.29□□□□□ -0.6
SNHG1-209ENST00000538654 DUOX2Q9NRD8 1548 aa11.29□□□□□ -0.6
SNHG1-209ENST00000538654 DDIT3P35638 169 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms