RNA–Protein interactions for RNA: ENST00000538174.6

PTPRB-203, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best)

Gene PTPRB, Length 2,661 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-203ENST00000538174 DISP2A7MBM2 1401 aa9.54□□□□□ -0.88
PTPRB-203ENST00000538174 PNPLA6Q8IY17 1366 aa9.54□□□□□ -0.88
PTPRB-203ENST00000538174 RAB3GAP2Q9H2M9 1393 aa9.53□□□□□ -0.88
PTPRB-203ENST00000538174 RGPD1P0DJD0 1748 aa9.53□□□□□ -0.88
PTPRB-203ENST00000538174 MST1RQ04912 1400 aa9.53□□□□□ -0.88
PTPRB-203ENST00000538174 SLC4A1APQ9BWU0 796 aaKnown RBP9.52□□□□□ -0.88
PTPRB-203ENST00000538174 ADAMTS13Q76LX8 1427 aa9.52□□□□□ -0.88
PTPRB-203ENST00000538174 RALGAPBQ86X10 1494 aa9.52□□□□□ -0.89
PTPRB-203ENST00000538174 MEX3CQ5U5Q3 659 aaKnown RBP9.51□□□□□ -0.89
PTPRB-203ENST00000538174 LRRC59Q96AG4 307 aaKnown RBP9.51□□□□□ -0.89
PTPRB-203ENST00000538174 FNBP4Q8N3X1 1017 aaPredicted RBP9.51□□□□□ -0.89
PTPRB-203ENST00000538174 ROCK1Q13464 1354 aa9.51□□□□□ -0.89
PTPRB-203ENST00000538174 ADGRL3Q9HAR2 1447 aa9.51□□□□□ -0.89
PTPRB-203ENST00000538174 RIMS2Q9UQ26 1411 aa9.5□□□□□ -0.89
PTPRB-203ENST00000538174 MYOM2P54296 1465 aa9.5□□□□□ -0.89
PTPRB-203ENST00000538174 BCL9LQ86UU0 1499 aa9.5□□□□□ -0.89
PTPRB-203ENST00000538174 ZNF777Q9ULD5 760 aaPredicted RBP9.5□□□□□ -0.89
PTPRB-203ENST00000538174 AFF2P51816 1311 aa9.5□□□□□ -0.89
PTPRB-203ENST00000538174 IGSF3O75054 1194 aa9.49□□□□□ -0.89
PTPRB-203ENST00000538174 TRPC5Q9UL62 973 aaPredicted RBP9.49□□□□□ -0.89
PTPRB-203ENST00000538174 NRXN3Q9Y4C0 1643 aa9.49□□□□□ -0.89
PTPRB-203ENST00000538174 KIF1AQ12756 1690 aa9.49□□□□□ -0.89
PTPRB-203ENST00000538174 RGPD3A6NKT7 1758 aaPredicted RBP9.49□□□□□ -0.89
PTPRB-203ENST00000538174 RGPD4Q7Z3J3 1758 aa9.49□□□□□ -0.89
PTPRB-203ENST00000538174 NALCNQ8IZF0 1738 aa9.48□□□□□ -0.89
PTPRB-203ENST00000538174 PARD3Q8TEW0 1356 aa9.48□□□□□ -0.89
PTPRB-203ENST00000538174 ADGRB2O60241 1585 aa9.48□□□□□ -0.89
PTPRB-203ENST00000538174 CDC42BPGQ6DT37 1551 aa9.48□□□□□ -0.89
PTPRB-203ENST00000538174 KIF15Q9NS87 1388 aa9.46□□□□□ -0.9
PTPRB-203ENST00000538174 MYO5BQ9ULV0 1848 aa9.46□□□□□ -0.9
PTPRB-203ENST00000538174 ANP32EQ9BTT0 268 aa9.46□□□□□ -0.9
PTPRB-203ENST00000538174 KDM2AQ9Y2K7 1162 aa9.46□□□□□ -0.9
PTPRB-203ENST00000538174 ATF3P18847 181 aa9.45□□□□□ -0.9
PTPRB-203ENST00000538174 ATP1B4Q9UN42 357 aaPredicted RBP9.45□□□□□ -0.9
PTPRB-203ENST00000538174 SOS2Q07890 1332 aaPredicted RBP9.45□□□□□ -0.9
PTPRB-203ENST00000538174 BRINP3Q76B58 766 aa9.45□□□□□ -0.9
PTPRB-203ENST00000538174 NAIPQ13075 1403 aa9.45□□□□□ -0.9
PTPRB-203ENST00000538174 PPP1R15AO75807 674 aaPredicted RBP9.44□□□□□ -0.9
PTPRB-203ENST00000538174 VSIG10Q8N0Z9 540 aa9.44□□□□□ -0.9
PTPRB-203ENST00000538174 SLIT2O94813 1529 aa9.43□□□□□ -0.9
PTPRB-203ENST00000538174 ANKRD30AQ9BXX3 1397 aa9.43□□□□□ -0.9
PTPRB-203ENST00000538174 CCDC136Q96JN2 1154 aa9.43□□□□□ -0.9
PTPRB-203ENST00000538174 QTRT2Q9H974 415 aaKnown RBP9.43□□□□□ -0.9
PTPRB-203ENST00000538174 KNDC1Q76NI1 1749 aa9.43□□□□□ -0.9
PTPRB-203ENST00000538174 RREB1Q92766 1687 aa9.43□□□□□ -0.9
PTPRB-203ENST00000538174 ABCC5O15440 1437 aa9.42□□□□□ -0.9
PTPRB-203ENST00000538174 ZNF644Q9H582 1327 aaPredicted RBP9.42□□□□□ -0.9
PTPRB-203ENST00000538174 DAPK1P53355 1430 aa9.42□□□□□ -0.9
PTPRB-203ENST00000538174 HSP90B1P14625 803 aaKnown RBP9.41□□□□□ -0.9
PTPRB-203ENST00000538174 IDI1Q13907 227 aa9.41□□□□□ -0.9
PTPRB-203ENST00000538174 GLI3P10071 1580 aa9.41□□□□□ -0.9
PTPRB-203ENST00000538174 ONECUT3O60422 494 aaPredicted RBP9.41□□□□□ -0.9
PTPRB-203ENST00000538174 TRIM52Q96A61 297 aa9.41□□□□□ -0.9
PTPRB-203ENST00000538174 C1orf167Q5SNV9 1468 aa9.41□□□□□ -0.9
PTPRB-203ENST00000538174 LRPPRCP42704 1394 aaKnown RBP9.41□□□□□ -0.9
PTPRB-203ENST00000538174 NINLQ9Y2I6 1382 aa9.4□□□□□ -0.9
PTPRB-203ENST00000538174 TNS1Q9HBL0 1735 aaKnown RBP9.4□□□□□ -0.91
PTPRB-203ENST00000538174 E9PCH4 1651 aa9.39□□□□□ -0.91
PTPRB-203ENST00000538174 PXDNQ92626 1479 aa9.39□□□□□ -0.91
PTPRB-203ENST00000538174 USP32Q8NFA0 1604 aa9.39□□□□□ -0.91
PTPRB-203ENST00000538174 PTPRUQ92729 1446 aa9.39□□□□□ -0.91
PTPRB-203ENST00000538174 CCER2I3L3R5 266 aa9.38□□□□□ -0.91
PTPRB-203ENST00000538174 NEUROD1Q13562 356 aa9.38□□□□□ -0.91
PTPRB-203ENST00000538174 NRAPQ86VF7 1730 aa9.38□□□□□ -0.91
PTPRB-203ENST00000538174 C11orf95C9JLR9 678 aaPredicted RBP9.38□□□□□ -0.91
PTPRB-203ENST00000538174 RBM33Q96EV2 1170 aaKnown RBP9.38□□□□□ -0.91
PTPRB-203ENST00000538174 STAG3Q9UJ98 1225 aa9.38□□□□□ -0.91
PTPRB-203ENST00000538174 ABCA3Q99758 1704 aa9.37□□□□□ -0.91
PTPRB-203ENST00000538174 THSD7AQ9UPZ6 1657 aa9.37□□□□□ -0.91
PTPRB-203ENST00000538174 BRWD3Q6RI45 1802 aa9.37□□□□□ -0.91
PTPRB-203ENST00000538174 PLCH1Q4KWH8 1693 aa9.36□□□□□ -0.91
PTPRB-203ENST00000538174 CFAP44Q96MT7 982 aa9.36□□□□□ -0.91
PTPRB-203ENST00000538174 TECPR2O15040 1411 aa9.36□□□□□ -0.91
PTPRB-203ENST00000538174 MIER1Q8N108 512 aa9.35□□□□□ -0.91
PTPRB-203ENST00000538174 CFAP65Q6ZU64 1925 aaKnown RBP9.35□□□□□ -0.91
PTPRB-203ENST00000538174 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.34□□□□□ -0.91
PTPRB-203ENST00000538174 USP21Q9UK80 565 aa9.34□□□□□ -0.91
PTPRB-203ENST00000538174 IFFO2Q5TF58 517 aa9.34□□□□□ -0.91
PTPRB-203ENST00000538174 PAXIP1Q6ZW49 1069 aaPredicted RBP9.34□□□□□ -0.91
PTPRB-203ENST00000538174 COL14A1Q05707 1796 aaKnown RBP9.34□□□□□ -0.91
PTPRB-203ENST00000538174 NUTM2BA6NNL0 878 aaPredicted RBP9.33□□□□□ -0.92
PTPRB-203ENST00000538174 NUTM2EB1AL46 878 aaPredicted RBP9.33□□□□□ -0.92
PTPRB-203ENST00000538174 NUTM2DQ5VT03 806 aaPredicted RBP9.33□□□□□ -0.92
PTPRB-203ENST00000538174 NUTM2AQ8IVF1 878 aaPredicted RBP9.33□□□□□ -0.92
PTPRB-203ENST00000538174 FMN2Q9NZ56 1722 aa9.33□□□□□ -0.92
PTPRB-203ENST00000538174 AAMPQ13685 434 aa9.33□□□□□ -0.92
PTPRB-203ENST00000538174 GJD4Q96KN9 370 aaPredicted RBP9.32□□□□□ -0.92
PTPRB-203ENST00000538174 A0A0U1RQG5 324 aaPredicted RBP9.32□□□□□ -0.92
PTPRB-203ENST00000538174 SLC26A8Q96RN1 970 aa9.32□□□□□ -0.92
PTPRB-203ENST00000538174 POLR3GLQ9BT43 218 aa9.32□□□□□ -0.92
PTPRB-203ENST00000538174 NPHP3Q7Z494 1330 aa9.32□□□□□ -0.92
PTPRB-203ENST00000538174 CCDC144AA2RUR9 1427 aa9.31□□□□□ -0.92
PTPRB-203ENST00000538174 SBNO1A3KN83 1393 aa9.31□□□□□ -0.92
PTPRB-203ENST00000538174 IRX6P78412 446 aaPredicted RBP9.31□□□□□ -0.92
PTPRB-203ENST00000538174 SF3B2Q13435 895 aaKnown RBP9.31□□□□□ -0.92
PTPRB-203ENST00000538174 VPS72Q15906 364 aa9.31□□□□□ -0.92
PTPRB-203ENST00000538174 NUP188Q5SRE5 1749 aa9.31□□□□□ -0.92
PTPRB-203ENST00000538174 RPGRIP1LQ68CZ1 1315 aa9.3□□□□□ -0.92
PTPRB-203ENST00000538174 KIF1BO60333 1816 aa9.3□□□□□ -0.92
PTPRB-203ENST00000538174 BAG6P46379 1132 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms