RNA–Protein interactions for RNA: ENST00000537380.1

CIITA-203, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 1,062 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-203ENST00000537380 HSPA1LP34931 641 aa13.1□□□□□ -0.31
CIITA-203ENST00000537380 CDCA8Q53HL2 280 aa13.1□□□□□ -0.31
CIITA-203ENST00000537380 PUS7Q96PZ0 661 aaKnown RBP13.1□□□□□ -0.31
CIITA-203ENST00000537380 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.1□□□□□ -0.31
CIITA-203ENST00000537380 ABCC11Q96J66 1382 aa13.09□□□□□ -0.31
CIITA-203ENST00000537380 TECPR2O15040 1411 aa13.09□□□□□ -0.31
CIITA-203ENST00000537380 KIF7Q2M1P5 1343 aa13.09□□□□□ -0.31
CIITA-203ENST00000537380 LRPPRCP42704 1394 aaKnown RBP13.08□□□□□ -0.31
CIITA-203ENST00000537380 MSH6P52701 1360 aa13.08□□□□□ -0.31
CIITA-203ENST00000537380 NALCNQ8IZF0 1738 aa13.08□□□□□ -0.32
CIITA-203ENST00000537380 DCCP43146 1447 aa13.08□□□□□ -0.32
CIITA-203ENST00000537380 YTHDC2Q9H6S0 1430 aaKnown RBP13.08□□□□□ -0.32
CIITA-203ENST00000537380 TMF1P82094 1093 aa13.08□□□□□ -0.32
CIITA-203ENST00000537380 HIRIP3Q9BW71 556 aaPredicted RBP13.08□□□□□ -0.32
CIITA-203ENST00000537380 C11orf95C9JLR9 678 aaPredicted RBP13.07□□□□□ -0.32
CIITA-203ENST00000537380 SOCS7O14512 581 aa13.07□□□□□ -0.32
CIITA-203ENST00000537380 RBM33Q96EV2 1170 aaKnown RBP13.07□□□□□ -0.32
CIITA-203ENST00000537380 CENPJQ9HC77 1338 aaPredicted RBP13.07□□□□□ -0.32
CIITA-203ENST00000537380 ADGRL3Q9HAR2 1447 aa13.06□□□□□ -0.32
CIITA-203ENST00000537380 ROBO2Q9HCK4 1378 aa13.06□□□□□ -0.32
CIITA-203ENST00000537380 ROBO1Q9Y6N7 1651 aa13.05□□□□□ -0.32
CIITA-203ENST00000537380 FAM135BQ49AJ0 1406 aa13.05□□□□□ -0.32
CIITA-203ENST00000537380 ARHGEF28Q8N1W1 1705 aaKnown RBP13.05□□□□□ -0.32
CIITA-203ENST00000537380 ILDR2Q71H61 639 aa13.05□□□□□ -0.32
CIITA-203ENST00000537380 DDX10Q13206 875 aaKnown RBP13.04□□□□□ -0.32
CIITA-203ENST00000537380 TMEM132EQ6IEE7 984 aa13.04□□□□□ -0.32
CIITA-203ENST00000537380 C14orf37Q86TY3 774 aa13.04□□□□□ -0.32
CIITA-203ENST00000537380 C19orf44Q9H6X5 657 aa13.04□□□□□ -0.32
CIITA-203ENST00000537380 TRAK1Q9UPV9 953 aa13.02□□□□□ -0.33
CIITA-203ENST00000537380 CDC42BPGQ6DT37 1551 aa13.02□□□□□ -0.33
CIITA-203ENST00000537380 CADPS2Q86UW7 1296 aa13.01□□□□□ -0.33
CIITA-203ENST00000537380 MED1Q15648 1581 aaPredicted RBP13.01□□□□□ -0.33
CIITA-203ENST00000537380 QRICH2Q9H0J4 1663 aa13.01□□□□□ -0.33
CIITA-203ENST00000537380 MST1RQ04912 1400 aa13□□□□□ -0.33
CIITA-203ENST00000537380 EVC2Q86UK5 1308 aa12.99□□□□□ -0.33
CIITA-203ENST00000537380 SLAIN2Q9P270 581 aa12.99□□□□□ -0.33
CIITA-203ENST00000537380 NINLQ9Y2I6 1382 aa12.98□□□□□ -0.33
CIITA-203ENST00000537380 ATF3P18847 181 aa12.98□□□□□ -0.33
CIITA-203ENST00000537380 AHDC1Q5TGY3 1603 aaPredicted RBP12.98□□□□□ -0.33
CIITA-203ENST00000537380 KTN1Q86UP2 1357 aaKnown RBP12.96□□□□□ -0.33
CIITA-203ENST00000537380 PLEKHH1Q9ULM0 1364 aa12.96□□□□□ -0.33
CIITA-203ENST00000537380 COL16A1Q07092 1604 aaPredicted RBP12.96□□□□□ -0.33
CIITA-203ENST00000537380 NHSL1Q5SYE7 1610 aa12.96□□□□□ -0.33
CIITA-203ENST00000537380 ADGRB2O60241 1585 aa12.96□□□□□ -0.33
CIITA-203ENST00000537380 PRAM1Q96QH2 718 aa12.96□□□□□ -0.33
CIITA-203ENST00000537380 POGKQ9P215 609 aa12.96□□□□□ -0.33
CIITA-203ENST00000537380 PHLPP1O60346 1717 aa12.96□□□□□ -0.34
CIITA-203ENST00000537380 FMN2Q9NZ56 1722 aa12.96□□□□□ -0.34
CIITA-203ENST00000537380 STK26Q9P289 416 aa12.95□□□□□ -0.34
CIITA-203ENST00000537380 C1orf167Q5SNV9 1468 aa12.95□□□□□ -0.34
CIITA-203ENST00000537380 ANP32CO43423 234 aa12.94□□□□□ -0.34
CIITA-203ENST00000537380 WAPLQ7Z5K2 1190 aa12.94□□□□□ -0.34
CIITA-203ENST00000537380 ATAD2Q6PL18 1390 aa12.94□□□□□ -0.34
CIITA-203ENST00000537380 NPC1L1Q9UHC9 1359 aa12.94□□□□□ -0.34
CIITA-203ENST00000537380 TULP4Q9NRJ4 1543 aa12.93□□□□□ -0.34
CIITA-203ENST00000537380 CCER2I3L3R5 266 aa12.93□□□□□ -0.34
CIITA-203ENST00000537380 PER1O15534 1290 aaPredicted RBP12.93□□□□□ -0.34
CIITA-203ENST00000537380 BRINP3Q76B58 766 aa12.93□□□□□ -0.34
CIITA-203ENST00000537380 MIER1Q8N108 512 aa12.93□□□□□ -0.34
CIITA-203ENST00000537380 MYOM1P52179 1685 aa12.92□□□□□ -0.34
CIITA-203ENST00000537380 SHPRHQ149N8 1683 aa12.89□□□□□ -0.35
CIITA-203ENST00000537380 PRKRIP1Q9H875 184 aaPredicted RBP12.89□□□□□ -0.35
CIITA-203ENST00000537380 USP32Q8NFA0 1604 aa12.88□□□□□ -0.35
CIITA-203ENST00000537380 WASLO00401 505 aaPredicted RBP12.88□□□□□ -0.35
CIITA-203ENST00000537380 RALBP1Q15311 655 aa12.88□□□□□ -0.35
CIITA-203ENST00000537380 MEX3CQ5U5Q3 659 aaKnown RBP12.88□□□□□ -0.35
CIITA-203ENST00000537380 PANK3Q9H999 370 aa12.88□□□□□ -0.35
CIITA-203ENST00000537380 KIF1AQ12756 1690 aa12.88□□□□□ -0.35
CIITA-203ENST00000537380 RGPD8O14715 1765 aaPredicted RBP12.88□□□□□ -0.35
CIITA-203ENST00000537380 ANKRD36BQ8N2N9 1353 aa12.87□□□□□ -0.35
CIITA-203ENST00000537380 POLR3GLQ9BT43 218 aa12.87□□□□□ -0.35
CIITA-203ENST00000537380 CDK19Q9BWU1 502 aa12.87□□□□□ -0.35
CIITA-203ENST00000537380 ANKARQ7Z5J8 1434 aa12.87□□□□□ -0.35
CIITA-203ENST00000537380 MINK1Q8N4C8 1332 aaPredicted RBP12.87□□□□□ -0.35
CIITA-203ENST00000537380 JCADQ9P266 1359 aa12.85□□□□□ -0.35
CIITA-203ENST00000537380 SRPK2P78362 688 aaKnown RBP12.85□□□□□ -0.35
CIITA-203ENST00000537380 ORAI2Q96SN7 254 aa12.85□□□□□ -0.35
CIITA-203ENST00000537380 KNSTRNQ9Y448 316 aa12.85□□□□□ -0.35
CIITA-203ENST00000537380 ATP7BP35670 1465 aa12.85□□□□□ -0.35
CIITA-203ENST00000537380 PXDNQ92626 1479 aa12.85□□□□□ -0.35
CIITA-203ENST00000537380 SAFB2Q14151 953 aaKnown RBP eCLIP12.84□□□□□ -0.35
CIITA-203ENST00000537380 TERF2IPQ9NYB0 399 aa12.84□□□□□ -0.35
CIITA-203ENST00000537380 PARD3Q8TEW0 1356 aa12.83□□□□□ -0.36
CIITA-203ENST00000537380 ITSN1Q15811 1721 aa12.83□□□□□ -0.36
CIITA-203ENST00000537380 AMER1Q5JTC6 1135 aaPredicted RBP12.83□□□□□ -0.36
CIITA-203ENST00000537380 CCDC61Q9Y6R9 512 aa12.83□□□□□ -0.36
CIITA-203ENST00000537380 SOS2Q07890 1332 aaPredicted RBP12.83□□□□□ -0.36
CIITA-203ENST00000537380 TOPAZ1Q8N9V7 1692 aa12.83□□□□□ -0.36
CIITA-203ENST00000537380 NSD2O96028 1365 aa12.82□□□□□ -0.36
CIITA-203ENST00000537380 SLC12A5Q9H2X9 1139 aa12.82□□□□□ -0.36
CIITA-203ENST00000537380 CABP2Q9NPB3 220 aa12.82□□□□□ -0.36
CIITA-203ENST00000537380 COL22A1Q8NFW1 1626 aaPredicted RBP12.81□□□□□ -0.36
CIITA-203ENST00000537380 PLEKHG3A1L390 1219 aa12.81□□□□□ -0.36
CIITA-203ENST00000537380 ESCO1Q5FWF5 840 aa12.81□□□□□ -0.36
CIITA-203ENST00000537380 DDX17Q92841 729 aaKnown RBP12.81□□□□□ -0.36
CIITA-203ENST00000537380 CARD14Q9BXL6 1004 aa12.81□□□□□ -0.36
CIITA-203ENST00000537380 SPATA31A6Q5VVP1 1343 aa12.81□□□□□ -0.36
CIITA-203ENST00000537380 NPHP3Q7Z494 1330 aa12.81□□□□□ -0.36
CIITA-203ENST00000537380 CPSF1Q10570 1443 aaKnown RBP12.8□□□□□ -0.36
CIITA-203ENST00000537380 CD163L1Q9NR16 1453 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms