RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 NFX1Q12986 1120 aaKnown RBP7.77□□□□□ -1.17
SKA3-207ENST00000536239 WNT7AO00755 349 aa7.76□□□□□ -1.17
SKA3-207ENST00000536239 RNF19BQ6ZMZ0 732 aa7.76□□□□□ -1.17
SKA3-207ENST00000536239 SNIP1Q8TAD8 396 aaKnown RBP7.76□□□□□ -1.17
SKA3-207ENST00000536239 PHOX2BQ99453 314 aa7.76□□□□□ -1.17
SKA3-207ENST00000536239 SMPD1P17405 629 aa7.75□□□□□ -1.17
SKA3-207ENST00000536239 GRIPAP1Q4V328 841 aa7.75□□□□□ -1.17
SKA3-207ENST00000536239 WIPF1O43516 503 aa7.74□□□□□ -1.17
SKA3-207ENST00000536239 TRIM32Q13049 653 aa7.73□□□□□ -1.17
SKA3-207ENST00000536239 ATP13A2Q9NQ11 1180 aa7.73□□□□□ -1.17
SKA3-207ENST00000536239 STK17AQ9UEE5 414 aa7.73□□□□□ -1.17
SKA3-207ENST00000536239 MMP16P51512 607 aa7.72□□□□□ -1.17
SKA3-207ENST00000536239 Q3C1V9 767 aa7.72□□□□□ -1.17
SKA3-207ENST00000536239 MRGPRX2Q96LB1 330 aa7.72□□□□□ -1.17
SKA3-207ENST00000536239 J3QL48 77 aa7.71□□□□□ -1.18
SKA3-207ENST00000536239 SNRPBP14678 240 aaKnown RBP7.71□□□□□ -1.18
SKA3-207ENST00000536239 INSM1Q01101 510 aaPredicted RBP7.71□□□□□ -1.18
SKA3-207ENST00000536239 SENP2Q9HC62 589 aa7.7□□□□□ -1.18
SKA3-207ENST00000536239 TERTO14746 1132 aaKnown RBP7.69□□□□□ -1.18
SKA3-207ENST00000536239 TRIM47Q96LD4 638 aa7.69□□□□□ -1.18
SKA3-207ENST00000536239 DXOO77932 396 aaKnown RBP7.68□□□□□ -1.18
SKA3-207ENST00000536239 CD46P15529 392 aa7.68□□□□□ -1.18
SKA3-207ENST00000536239 LCE2CQ5TA81 110 aa7.68□□□□□ -1.18
SKA3-207ENST00000536239 HPS1Q92902 700 aa7.68□□□□□ -1.18
SKA3-207ENST00000536239 USB1Q9BQ65 265 aaKnown RBP7.68□□□□□ -1.18
SKA3-207ENST00000536239 REPIN1Q9BWE0 567 aaKnown RBP7.68□□□□□ -1.18
SKA3-207ENST00000536239 KIFC2Q96AC6 838 aa7.66□□□□□ -1.18
SKA3-207ENST00000536239 KDM4AO75164 1064 aa7.65□□□□□ -1.18
SKA3-207ENST00000536239 SKOR1P84550 965 aa7.65□□□□□ -1.18
SKA3-207ENST00000536239 RC3H1Q5TC82 1133 aaKnown RBP7.65□□□□□ -1.18
SKA3-207ENST00000536239 GPIHBP1Q8IV16 184 aa7.65□□□□□ -1.18
SKA3-207ENST00000536239 CCDC24Q8N4L8 307 aa7.65□□□□□ -1.18
SKA3-207ENST00000536239 WNT7BP56706 349 aa7.64□□□□□ -1.19
SKA3-207ENST00000536239 USP46P62068 366 aa7.62□□□□□ -1.19
SKA3-207ENST00000536239 HLA-CQ95604 372 aa7.62□□□□□ -1.19
SKA3-207ENST00000536239 ALDH1A1P00352 501 aa7.6□□□□□ -1.19
SKA3-207ENST00000536239 HOXA2O43364 376 aa7.59□□□□□ -1.19
SKA3-207ENST00000536239 MAP2K5Q13163 448 aa7.59□□□□□ -1.19
SKA3-207ENST00000536239 SLC16A10Q8TF71 515 aa7.59□□□□□ -1.19
SKA3-207ENST00000536239 JUNDP17535 347 aa7.58□□□□□ -1.2
SKA3-207ENST00000536239 MDM2Q00987 491 aaPredicted RBP7.58□□□□□ -1.2
SKA3-207ENST00000536239 NXF1Q9UBU9 619 aaKnown RBP7.58□□□□□ -1.2
SKA3-207ENST00000536239 IRF6O14896 467 aa7.57□□□□□ -1.2
SKA3-207ENST00000536239 SIAH2O43255 324 aa7.57□□□□□ -1.2
SKA3-207ENST00000536239 GUCA2AQ02747 115 aa7.57□□□□□ -1.2
SKA3-207ENST00000536239 SYMPKQ92797 1274 aaKnown RBP7.57□□□□□ -1.2
SKA3-207ENST00000536239 PTCRAQ6ISU1 281 aaPredicted RBP7.56□□□□□ -1.2
SKA3-207ENST00000536239 TRIM46Q7Z4K8 759 aa7.55□□□□□ -1.2
SKA3-207ENST00000536239 EHBP1Q8NDI1 1231 aa7.55□□□□□ -1.2
SKA3-207ENST00000536239 NUDT12Q9BQG2 462 aa7.55□□□□□ -1.2
SKA3-207ENST00000536239 FAM181BA6NEQ2 426 aa7.54□□□□□ -1.2
SKA3-207ENST00000536239 CAPN5O15484 640 aaPredicted RBP7.54□□□□□ -1.2
SKA3-207ENST00000536239 GMPRP36959 345 aa7.54□□□□□ -1.2
SKA3-207ENST00000536239 NPAS3Q8IXF0 933 aa7.54□□□□□ -1.2
SKA3-207ENST00000536239 WASF2Q9Y6W5 498 aa7.54□□□□□ -1.2
SKA3-207ENST00000536239 MINK1Q8N4C8 1332 aaPredicted RBP7.53□□□□□ -1.2
SKA3-207ENST00000536239 BMP1P13497 986 aa7.53□□□□□ -1.2
SKA3-207ENST00000536239 RETREG3Q86VR2 466 aa7.53□□□□□ -1.2
SKA3-207ENST00000536239 IRF7Q92985 503 aa7.53□□□□□ -1.2
SKA3-207ENST00000536239 LORP23490 312 aaPredicted RBP7.52□□□□□ -1.21
SKA3-207ENST00000536239 SH3BP2P78314 561 aa7.52□□□□□ -1.21
SKA3-207ENST00000536239 PLCB2Q00722 1185 aa7.52□□□□□ -1.21
SKA3-207ENST00000536239 ZSCAN1Q8NBB4 408 aa7.52□□□□□ -1.21
SKA3-207ENST00000536239 FAM217BQ9NTX9 383 aaPredicted RBP7.52□□□□□ -1.21
SKA3-207ENST00000536239 NUTM1Q86Y26 1132 aa7.51□□□□□ -1.21
SKA3-207ENST00000536239 GPCPD1Q9NPB8 672 aa7.51□□□□□ -1.21
SKA3-207ENST00000536239 VEGFBP49765 207 aa7.5□□□□□ -1.21
SKA3-207ENST00000536239 H3BM21 787 aa7.49□□□□□ -1.21
SKA3-207ENST00000536239 CCNYL3P0C7X3 344 aa7.49□□□□□ -1.21
SKA3-207ENST00000536239 CLCN1P35523 988 aa7.49□□□□□ -1.21
SKA3-207ENST00000536239 CCDC102AQ96A19 550 aa7.49□□□□□ -1.21
SKA3-207ENST00000536239 PCDHGC3Q9UN70 934 aa7.49□□□□□ -1.21
SKA3-207ENST00000536239 FDX1P10109 184 aa7.48□□□□□ -1.21
SKA3-207ENST00000536239 MS4A1P11836 297 aa7.48□□□□□ -1.21
SKA3-207ENST00000536239 ZFP42Q96MM3 310 aa7.48□□□□□ -1.21
SKA3-207ENST00000536239 C6orf229H3BNL8 230 aa7.47□□□□□ -1.21
SKA3-207ENST00000536239 UNC93B1Q9H1C4 597 aa7.47□□□□□ -1.21
SKA3-207ENST00000536239 EVA1BQ9NVM1 165 aa7.47□□□□□ -1.21
SKA3-207ENST00000536239 ERBB4Q15303 1308 aa7.47□□□□□ -1.21
SKA3-207ENST00000536239 PTPRNQ16849 979 aa7.46□□□□□ -1.22
SKA3-207ENST00000536239 BAP1Q92560 729 aa7.46□□□□□ -1.22
SKA3-207ENST00000536239 PLEKHG3A1L390 1219 aa7.45□□□□□ -1.22
SKA3-207ENST00000536239 TULP1O00294 542 aaPredicted RBP7.45□□□□□ -1.22
SKA3-207ENST00000536239 LINC01559Q495D7 138 aa7.45□□□□□ -1.22
SKA3-207ENST00000536239 MPNDQ8N594 471 aa7.45□□□□□ -1.22
SKA3-207ENST00000536239 KRI1Q8N9T8 703 aaKnown RBP7.45□□□□□ -1.22
SKA3-207ENST00000536239 TLL2Q9Y6L7 1015 aa7.45□□□□□ -1.22
SKA3-207ENST00000536239 VARSP26640 1264 aaKnown RBP7.44□□□□□ -1.22
SKA3-207ENST00000536239 KCNH2Q12809 1159 aa7.44□□□□□ -1.22
SKA3-207ENST00000536239 NNTQ13423 1086 aa7.43□□□□□ -1.22
SKA3-207ENST00000536239 MRPL14Q6P1L8 145 aaKnown RBP7.43□□□□□ -1.22
SKA3-207ENST00000536239 ZNF511Q8NB15 262 aa7.43□□□□□ -1.22
SKA3-207ENST00000536239 SSTR3P32745 418 aaPredicted RBP7.42□□□□□ -1.22
SKA3-207ENST00000536239 SCARF1Q14162 830 aa7.42□□□□□ -1.22
SKA3-207ENST00000536239 SPIRE2Q8WWL2 714 aa7.42□□□□□ -1.22
SKA3-207ENST00000536239 KDM2AQ9Y2K7 1162 aa7.42□□□□□ -1.22
SKA3-207ENST00000536239 TIMP2P16035 220 aa7.41□□□□□ -1.22
SKA3-207ENST00000536239 NDUFV2P19404 249 aa7.41□□□□□ -1.22
SKA3-207ENST00000536239 PRR7Q8TB68 274 aa7.41□□□□□ -1.22
SKA3-207ENST00000536239 PURBQ96QR8 312 aaKnown RBP7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms