RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 BCL11AQ9H165 835 aa20.83■□□□□ 0.92
CHMP1A-202ENST00000535997 RUNDC1Q96C34 613 aa20.82■□□□□ 0.92
CHMP1A-202ENST00000535997 DMRT2Q9Y5R5 561 aa20.82■□□□□ 0.92
CHMP1A-202ENST00000535997 NEO1Q92859 1461 aa20.82■□□□□ 0.92
CHMP1A-202ENST00000535997 DDRGK1Q96HY6 314 aa20.81■□□□□ 0.92
CHMP1A-202ENST00000535997 EVC2Q86UK5 1308 aa20.81■□□□□ 0.92
CHMP1A-202ENST00000535997 USP32Q8NFA0 1604 aa20.8■□□□□ 0.92
CHMP1A-202ENST00000535997 RTL5Q5HYW3 569 aaPredicted RBP20.8■□□□□ 0.92
CHMP1A-202ENST00000535997 NINLQ9Y2I6 1382 aa20.79■□□□□ 0.92
CHMP1A-202ENST00000535997 FAM161AQ3B820 660 aa20.79■□□□□ 0.92
CHMP1A-202ENST00000535997 CAMSAP1Q5T5Y3 1602 aa20.79■□□□□ 0.92
CHMP1A-202ENST00000535997 RAPGEF3O95398 923 aa20.78■□□□□ 0.92
CHMP1A-202ENST00000535997 TNNT2P45379 298 aaPredicted RBP20.78■□□□□ 0.92
CHMP1A-202ENST00000535997 CFAP53Q96M91 514 aa20.78■□□□□ 0.92
CHMP1A-202ENST00000535997 PHF23Q9BUL5 403 aaPredicted RBP20.78■□□□□ 0.92
CHMP1A-202ENST00000535997 ARHGAP31Q2M1Z3 1444 aa20.78■□□□□ 0.92
CHMP1A-202ENST00000535997 PIK3C2BO00750 1634 aa20.78■□□□□ 0.92
CHMP1A-202ENST00000535997 MTHFSP49914 203 aa20.78■□□□□ 0.92
CHMP1A-202ENST00000535997 NCBP3Q53F19 620 aaKnown RBP20.78■□□□□ 0.92
CHMP1A-202ENST00000535997 WDR63Q8IWG1 891 aa20.78■□□□□ 0.92
CHMP1A-202ENST00000535997 SHPRHQ149N8 1683 aa20.77■□□□□ 0.92
CHMP1A-202ENST00000535997 NSD2O96028 1365 aa20.77■□□□□ 0.91
CHMP1A-202ENST00000535997 TCP11L2Q8N4U5 519 aa20.76■□□□□ 0.91
CHMP1A-202ENST00000535997 CCDC27Q2M243 656 aa20.76■□□□□ 0.91
CHMP1A-202ENST00000535997 SLC52A1Q9NWF4 448 aa20.76■□□□□ 0.91
CHMP1A-202ENST00000535997 ANKRD36BQ8N2N9 1353 aa20.76■□□□□ 0.91
CHMP1A-202ENST00000535997 GLI2P10070 1586 aa20.75■□□□□ 0.91
CHMP1A-202ENST00000535997 SIGLEC1Q9BZZ2 1709 aa20.75■□□□□ 0.91
CHMP1A-202ENST00000535997 ZFYVE9O95405 1425 aa20.74■□□□□ 0.91
CHMP1A-202ENST00000535997 NEXMIFQ5QGS0 1516 aa20.74■□□□□ 0.91
CHMP1A-202ENST00000535997 USP35Q9P2H5 1018 aa20.74■□□□□ 0.91
CHMP1A-202ENST00000535997 IDI1Q13907 227 aa20.74■□□□□ 0.91
CHMP1A-202ENST00000535997 C8orf34Q49A92 452 aa20.73■□□□□ 0.91
CHMP1A-202ENST00000535997 PPM1GO15355 546 aaPredicted RBP20.73■□□□□ 0.91
CHMP1A-202ENST00000535997 AAMPQ13685 434 aa20.73■□□□□ 0.91
CHMP1A-202ENST00000535997 NEUROD2Q15784 382 aa20.73■□□□□ 0.91
CHMP1A-202ENST00000535997 NUTM2DQ5VT03 806 aaPredicted RBP20.72■□□□□ 0.91
CHMP1A-202ENST00000535997 ARHGEF28Q8N1W1 1705 aaKnown RBP20.71■□□□□ 0.91
CHMP1A-202ENST00000535997 IQSEC2Q5JU85 1478 aa20.71■□□□□ 0.91
CHMP1A-202ENST00000535997 CANXP27824 592 aaKnown RBP20.71■□□□□ 0.91
CHMP1A-202ENST00000535997 DIP2CQ9Y2E4 1556 aa20.71■□□□□ 0.91
CHMP1A-202ENST00000535997 RARSP54136 660 aaKnown RBP20.7■□□□□ 0.9
CHMP1A-202ENST00000535997 CLUAP1Q96AJ1 413 aa20.7■□□□□ 0.9
CHMP1A-202ENST00000535997 TULP4Q9NRJ4 1543 aa20.7■□□□□ 0.9
CHMP1A-202ENST00000535997 RRP7AQ9Y3A4 280 aaKnown RBP20.7■□□□□ 0.9
CHMP1A-202ENST00000535997 IGHDP01880 384 aa20.69■□□□□ 0.9
CHMP1A-202ENST00000535997 RGS3P49796 1198 aa20.69■□□□□ 0.9
CHMP1A-202ENST00000535997 CABP2Q9NPB3 220 aa20.69■□□□□ 0.9
CHMP1A-202ENST00000535997 PANK1Q8TE04 598 aa20.67■□□□□ 0.9
CHMP1A-202ENST00000535997 COG6Q9Y2V7 657 aa20.67■□□□□ 0.9
CHMP1A-202ENST00000535997 MYH16Q9H6N6 1097 aa20.66■□□□□ 0.9
CHMP1A-202ENST00000535997 FRAT1Q92837 279 aaPredicted RBP20.65■□□□□ 0.9
CHMP1A-202ENST00000535997 LAS1LQ9Y4W2 734 aaKnown RBP20.65■□□□□ 0.9
CHMP1A-202ENST00000535997 NEFMP07197 916 aa20.65■□□□□ 0.9
CHMP1A-202ENST00000535997 U2AF1L5P0DN76 240 aaPredicted RBP20.65■□□□□ 0.9
CHMP1A-202ENST00000535997 U2AF1Q01081 240 aaKnown RBP eCLIP20.65■□□□□ 0.9
CHMP1A-202ENST00000535997 ABCC11Q96J66 1382 aa20.64■□□□□ 0.89
CHMP1A-202ENST00000535997 RICTORQ6R327 1708 aa20.64■□□□□ 0.89
CHMP1A-202ENST00000535997 DAXXQ9UER7 740 aaPredicted RBP20.64■□□□□ 0.89
CHMP1A-202ENST00000535997 MAPK8IP3Q9UPT6 1336 aa20.63■□□□□ 0.89
CHMP1A-202ENST00000535997 SRPK2P78362 688 aaKnown RBP20.62■□□□□ 0.89
CHMP1A-202ENST00000535997 SAFB2Q14151 953 aaKnown RBP eCLIP20.62■□□□□ 0.89
CHMP1A-202ENST00000535997 PMFBP1Q8TBY8 1022 aa20.62■□□□□ 0.89
CHMP1A-202ENST00000535997 STK26Q9P289 416 aa20.62■□□□□ 0.89
CHMP1A-202ENST00000535997 A0A1W2PP64 1363 aa20.62■□□□□ 0.89
CHMP1A-202ENST00000535997 TERF2IPQ9NYB0 399 aa20.61■□□□□ 0.89
CHMP1A-202ENST00000535997 ATAD2Q6PL18 1390 aa20.61■□□□□ 0.89
CHMP1A-202ENST00000535997 CT47B1P0C2W7 299 aaPredicted RBP20.61■□□□□ 0.89
CHMP1A-202ENST00000535997 YEATS2Q9ULM3 1422 aa20.59■□□□□ 0.89
CHMP1A-202ENST00000535997 TMEM131LA2VDJ0 1609 aa20.59■□□□□ 0.89
CHMP1A-202ENST00000535997 PTPRMP28827 1452 aa20.57■□□□□ 0.88
CHMP1A-202ENST00000535997 ADGRB2O60241 1585 aa20.57■□□□□ 0.88
CHMP1A-202ENST00000535997 FYB1O15117 783 aa20.57■□□□□ 0.88
CHMP1A-202ENST00000535997 PLEKHF1Q96S99 279 aa20.57■□□□□ 0.88
CHMP1A-202ENST00000535997 POGKQ9P215 609 aa20.57■□□□□ 0.88
CHMP1A-202ENST00000535997 MED14O60244 1454 aa20.56■□□□□ 0.88
CHMP1A-202ENST00000535997 RLBP1P12271 317 aa20.56■□□□□ 0.88
CHMP1A-202ENST00000535997 PRAM1Q96QH2 718 aa20.56■□□□□ 0.88
CHMP1A-202ENST00000535997 GGNBP2Q9H3C7 697 aa20.56■□□□□ 0.88
CHMP1A-202ENST00000535997 PREX1Q8TCU6 1659 aa20.56■□□□□ 0.88
CHMP1A-202ENST00000535997 YTHDC2Q9H6S0 1430 aaKnown RBP20.56■□□□□ 0.88
CHMP1A-202ENST00000535997 MYO5BQ9ULV0 1848 aa20.55■□□□□ 0.88
CHMP1A-202ENST00000535997 PCDHB15Q9Y5E8 787 aa20.55■□□□□ 0.88
CHMP1A-202ENST00000535997 SLC4A3P48751 1232 aa20.54■□□□□ 0.88
CHMP1A-202ENST00000535997 MINK1Q8N4C8 1332 aaPredicted RBP20.54■□□□□ 0.88
CHMP1A-202ENST00000535997 TMPOP42166 694 aaKnown RBP20.53■□□□□ 0.88
CHMP1A-202ENST00000535997 BCL2L13Q9BXK5 485 aa20.53■□□□□ 0.88
CHMP1A-202ENST00000535997 RWDD1Q9H446 243 aaPredicted RBP20.53■□□□□ 0.88
CHMP1A-202ENST00000535997 ZMYM3Q14202 1370 aa20.53■□□□□ 0.88
CHMP1A-202ENST00000535997 U2SURPO15042 1029 aaKnown RBP20.53■□□□□ 0.88
CHMP1A-202ENST00000535997 ZKSCAN2Q63HK3 967 aa20.52■□□□□ 0.88
CHMP1A-202ENST00000535997 PNNQ9H307 717 aaKnown RBP20.52■□□□□ 0.88
CHMP1A-202ENST00000535997 HDGFL2Q7Z4V5 671 aaPredicted RBP20.52■□□□□ 0.88
CHMP1A-202ENST00000535997 MVPQ14764 893 aaKnown RBP20.51■□□□□ 0.87
CHMP1A-202ENST00000535997 CD163L1Q9NR16 1453 aa20.51■□□□□ 0.87
CHMP1A-202ENST00000535997 CLTCQ00610 1675 aaKnown RBP20.51■□□□□ 0.87
CHMP1A-202ENST00000535997 IL16Q14005 1332 aa20.51■□□□□ 0.87
CHMP1A-202ENST00000535997 VIRMAQ69YN4 1812 aaKnown RBP20.51■□□□□ 0.87
CHMP1A-202ENST00000535997 COL3A1P02461 1466 aaPredicted RBP20.51■□□□□ 0.87
CHMP1A-202ENST00000535997 FBXO31Q5XUX0 539 aaPredicted RBP20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms