RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 ZBTB47Q9UFB7 747 aaPredicted RBP17.19■□□□□ 0.34
LDLR-203ENST00000535915 NEXMIFQ5QGS0 1516 aa17.19■□□□□ 0.34
LDLR-203ENST00000535915 VGFO15240 615 aaPredicted RBP17.19■□□□□ 0.34
LDLR-203ENST00000535915 E9PSI1 815 aa17.18■□□□□ 0.34
LDLR-203ENST00000535915 NGEFQ8N5V2 710 aa17.18■□□□□ 0.34
LDLR-203ENST00000535915 SKAP1Q86WV1 359 aa17.17■□□□□ 0.34
LDLR-203ENST00000535915 USP32Q8NFA0 1604 aa17.17■□□□□ 0.34
LDLR-203ENST00000535915 MYO5BQ9ULV0 1848 aa17.17■□□□□ 0.34
LDLR-203ENST00000535915 EVC2Q86UK5 1308 aa17.15■□□□□ 0.34
LDLR-203ENST00000535915 KDM2BQ8NHM5 1336 aa17.15■□□□□ 0.34
LDLR-203ENST00000535915 DMRT2Q9Y5R5 561 aa17.15■□□□□ 0.34
LDLR-203ENST00000535915 CENPQQ7L2Z9 268 aaPredicted RBP17.15■□□□□ 0.34
LDLR-203ENST00000535915 CGNL1Q0VF96 1302 aa17.15■□□□□ 0.34
LDLR-203ENST00000535915 ARHGAP31Q2M1Z3 1444 aa17.14■□□□□ 0.33
LDLR-203ENST00000535915 TULP4Q9NRJ4 1543 aa17.14■□□□□ 0.33
LDLR-203ENST00000535915 IDI1Q13907 227 aa17.14■□□□□ 0.33
LDLR-203ENST00000535915 BCAR3O75815 825 aa17.13■□□□□ 0.33
LDLR-203ENST00000535915 WWC1Q8IX03 1113 aa17.13■□□□□ 0.33
LDLR-203ENST00000535915 YEATS2Q9ULM3 1422 aa17.13■□□□□ 0.33
LDLR-203ENST00000535915 SENP3Q9H4L4 574 aaPredicted RBP17.12■□□□□ 0.33
LDLR-203ENST00000535915 PREX1Q8TCU6 1659 aa17.12■□□□□ 0.33
LDLR-203ENST00000535915 SAFB2Q14151 953 aaKnown RBP eCLIP17.11■□□□□ 0.33
LDLR-203ENST00000535915 NBR1Q14596 966 aa17.11■□□□□ 0.33
LDLR-203ENST00000535915 NEUROD2Q15784 382 aa17.11■□□□□ 0.33
LDLR-203ENST00000535915 MTHFSP49914 203 aa17.11■□□□□ 0.33
LDLR-203ENST00000535915 PUS7Q96PZ0 661 aaKnown RBP17.11■□□□□ 0.33
LDLR-203ENST00000535915 ANKRD36BQ8N2N9 1353 aa17.11■□□□□ 0.33
LDLR-203ENST00000535915 RUNDC1Q96C34 613 aa17.11■□□□□ 0.33
LDLR-203ENST00000535915 CABP2Q9NPB3 220 aa17.11■□□□□ 0.33
LDLR-203ENST00000535915 SLC52A1Q9NWF4 448 aa17.11■□□□□ 0.33
LDLR-203ENST00000535915 DEKP35659 375 aaKnown RBP17.1■□□□□ 0.33
LDLR-203ENST00000535915 CFAP53Q96M91 514 aa17.1■□□□□ 0.33
LDLR-203ENST00000535915 STK26Q9P289 416 aa17.09■□□□□ 0.33
LDLR-203ENST00000535915 RRP7AQ9Y3A4 280 aaKnown RBP17.09■□□□□ 0.33
LDLR-203ENST00000535915 ZFYVE9O95405 1425 aa17.08■□□□□ 0.32
LDLR-203ENST00000535915 TCP11L2Q8N4U5 519 aa17.08■□□□□ 0.32
LDLR-203ENST00000535915 TMEM131LA2VDJ0 1609 aa17.08■□□□□ 0.32
LDLR-203ENST00000535915 NSD2O96028 1365 aa17.07■□□□□ 0.32
LDLR-203ENST00000535915 IQSEC2Q5JU85 1478 aa17.07■□□□□ 0.32
LDLR-203ENST00000535915 CANXP27824 592 aaKnown RBP17.06■□□□□ 0.32
LDLR-203ENST00000535915 SRPK2P78362 688 aaKnown RBP17.06■□□□□ 0.32
LDLR-203ENST00000535915 PDE3AQ14432 1141 aa17.04■□□□□ 0.32
LDLR-203ENST00000535915 A0A1W2PP64 1363 aa17.03■□□□□ 0.32
LDLR-203ENST00000535915 NINLQ9Y2I6 1382 aa17.03■□□□□ 0.32
LDLR-203ENST00000535915 CYB5RLQ6IPT4 315 aa17.02■□□□□ 0.32
LDLR-203ENST00000535915 WDR63Q8IWG1 891 aa17.02■□□□□ 0.32
LDLR-203ENST00000535915 U2AF1L5P0DN76 240 aaPredicted RBP17.02■□□□□ 0.31
LDLR-203ENST00000535915 U2AF1Q01081 240 aaKnown RBP eCLIP17.02■□□□□ 0.31
LDLR-203ENST00000535915 PTPRMP28827 1452 aa17.02■□□□□ 0.31
LDLR-203ENST00000535915 RGS3P49796 1198 aa17.01■□□□□ 0.31
LDLR-203ENST00000535915 FRAT1Q92837 279 aaPredicted RBP17.01■□□□□ 0.31
LDLR-203ENST00000535915 PHF23Q9BUL5 403 aaPredicted RBP17.01■□□□□ 0.31
LDLR-203ENST00000535915 MINK1Q8N4C8 1332 aaPredicted RBP17.01■□□□□ 0.31
LDLR-203ENST00000535915 TSPOAP1O95153 1857 aa17.01■□□□□ 0.31
LDLR-203ENST00000535915 FBXO31Q5XUX0 539 aaPredicted RBP17.01■□□□□ 0.31
LDLR-203ENST00000535915 POGKQ9P215 609 aa17.01■□□□□ 0.31
LDLR-203ENST00000535915 ABCC11Q96J66 1382 aa17.01■□□□□ 0.31
LDLR-203ENST00000535915 PANK1Q8TE04 598 aa17■□□□□ 0.31
LDLR-203ENST00000535915 PRAM1Q96QH2 718 aa17■□□□□ 0.31
LDLR-203ENST00000535915 ANKRD26Q9UPS8 1709 aa17■□□□□ 0.31
LDLR-203ENST00000535915 FAM161AQ3B820 660 aa17■□□□□ 0.31
LDLR-203ENST00000535915 ANO8Q9HCE9 1232 aaPredicted RBP17■□□□□ 0.31
LDLR-203ENST00000535915 COG6Q9Y2V7 657 aa17■□□□□ 0.31
LDLR-203ENST00000535915 YTHDC2Q9H6S0 1430 aaKnown RBP17■□□□□ 0.31
LDLR-203ENST00000535915 CCDC27Q2M243 656 aa17■□□□□ 0.31
LDLR-203ENST00000535915 RARSP54136 660 aaKnown RBP16.99■□□□□ 0.31
LDLR-203ENST00000535915 GGNBP2Q9H3C7 697 aa16.99■□□□□ 0.31
LDLR-203ENST00000535915 CLTCQ00610 1675 aaKnown RBP16.99■□□□□ 0.31
LDLR-203ENST00000535915 ATAD2Q6PL18 1390 aa16.99■□□□□ 0.31
LDLR-203ENST00000535915 RTL5Q5HYW3 569 aaPredicted RBP16.99■□□□□ 0.31
LDLR-203ENST00000535915 DDRGK1Q96HY6 314 aa16.99■□□□□ 0.31
LDLR-203ENST00000535915 STAG3Q9UJ98 1225 aa16.99■□□□□ 0.31
LDLR-203ENST00000535915 TERF2IPQ9NYB0 399 aa16.98■□□□□ 0.31
LDLR-203ENST00000535915 CLUAP1Q96AJ1 413 aa16.98■□□□□ 0.31
LDLR-203ENST00000535915 IGHDP01880 384 aa16.97■□□□□ 0.31
LDLR-203ENST00000535915 C8orf34Q49A92 452 aa16.97■□□□□ 0.31
LDLR-203ENST00000535915 ALKQ9UM73 1620 aa16.97■□□□□ 0.31
LDLR-203ENST00000535915 ADGRB2O60241 1585 aa16.97■□□□□ 0.31
LDLR-203ENST00000535915 FAM69CQ0P6D2 419 aa16.97■□□□□ 0.31
LDLR-203ENST00000535915 U2SURPO15042 1029 aaKnown RBP16.96■□□□□ 0.31
LDLR-203ENST00000535915 MYH16Q9H6N6 1097 aa16.96■□□□□ 0.31
LDLR-203ENST00000535915 VIRMAQ69YN4 1812 aaKnown RBP16.95■□□□□ 0.3
LDLR-203ENST00000535915 BCL2L13Q9BXK5 485 aa16.95■□□□□ 0.3
LDLR-203ENST00000535915 NCBP3Q53F19 620 aaKnown RBP16.94■□□□□ 0.3
LDLR-203ENST00000535915 LAS1LQ9Y4W2 734 aaKnown RBP16.94■□□□□ 0.3
LDLR-203ENST00000535915 FYB1O15117 783 aa16.94■□□□□ 0.3
LDLR-203ENST00000535915 CD163L1Q9NR16 1453 aa16.94■□□□□ 0.3
LDLR-203ENST00000535915 KIF20BQ96Q89 1820 aa16.94■□□□□ 0.3
LDLR-203ENST00000535915 DIP2BQ9P265 1576 aa16.94■□□□□ 0.3
LDLR-203ENST00000535915 HDGFL2Q7Z4V5 671 aaPredicted RBP16.93■□□□□ 0.3
LDLR-203ENST00000535915 CDK19Q9BWU1 502 aa16.93■□□□□ 0.3
LDLR-203ENST00000535915 COL3A1P02461 1466 aaPredicted RBP16.92■□□□□ 0.3
LDLR-203ENST00000535915 MED14O60244 1454 aa16.92■□□□□ 0.3
LDLR-203ENST00000535915 TNNQ9UQP3 1299 aa16.91■□□□□ 0.3
LDLR-203ENST00000535915 MAPK8IP3Q9UPT6 1336 aa16.91■□□□□ 0.3
LDLR-203ENST00000535915 RLBP1P12271 317 aa16.9■□□□□ 0.3
LDLR-203ENST00000535915 PLEKHF1Q96S99 279 aa16.9■□□□□ 0.3
LDLR-203ENST00000535915 NLRP1Q9C000 1473 aa16.9■□□□□ 0.3
LDLR-203ENST00000535915 CABP1Q9NZU7 370 aa16.9■□□□□ 0.3
LDLR-203ENST00000535915 RIMBP3CA6NJZ7 1639 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms