RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 MYOM2P54296 1465 aa16.85■□□□□ 0.29
CLSTN3-206ENST00000535668 IFT172Q9UG01 1749 aa16.84■□□□□ 0.29
CLSTN3-206ENST00000535668 QTRT2Q9H974 415 aaKnown RBP16.84■□□□□ 0.29
CLSTN3-206ENST00000535668 NPHP3Q7Z494 1330 aa16.84■□□□□ 0.29
CLSTN3-206ENST00000535668 PXDNQ92626 1479 aa16.84■□□□□ 0.29
CLSTN3-206ENST00000535668 NRXN1Q9ULB1 1477 aa16.84■□□□□ 0.29
CLSTN3-206ENST00000535668 NUTM2BA6NNL0 878 aaPredicted RBP16.83■□□□□ 0.28
CLSTN3-206ENST00000535668 NUTM2EB1AL46 878 aaPredicted RBP16.83■□□□□ 0.28
CLSTN3-206ENST00000535668 NUTM2AQ8IVF1 878 aaPredicted RBP16.83■□□□□ 0.28
CLSTN3-206ENST00000535668 ADGRF5Q8IZF2 1346 aa16.83■□□□□ 0.28
CLSTN3-206ENST00000535668 DDX17Q92841 729 aaKnown RBP16.83■□□□□ 0.28
CLSTN3-206ENST00000535668 MPHOSPH9Q99550 1183 aa16.83■□□□□ 0.28
CLSTN3-206ENST00000535668 KNDC1Q76NI1 1749 aa16.82■□□□□ 0.28
CLSTN3-206ENST00000535668 RGS12O14924 1447 aa16.82■□□□□ 0.28
CLSTN3-206ENST00000535668 NGLY1Q96IV0 654 aa16.82■□□□□ 0.28
CLSTN3-206ENST00000535668 C8orf37Q96NL8 207 aa16.8■□□□□ 0.28
CLSTN3-206ENST00000535668 ATRNO75882 1429 aa16.79■□□□□ 0.28
CLSTN3-206ENST00000535668 C14orf93Q9H972 538 aaKnown RBP16.79■□□□□ 0.28
CLSTN3-206ENST00000535668 TRPC5Q9UL62 973 aaPredicted RBP16.78■□□□□ 0.28
CLSTN3-206ENST00000535668 BCL9LQ86UU0 1499 aa16.78■□□□□ 0.28
CLSTN3-206ENST00000535668 SRCAPQ6ZRS2 3230 aa16.77■□□□□ 0.28
CLSTN3-206ENST00000535668 YTHDC2Q9H6S0 1430 aaKnown RBP16.77■□□□□ 0.27
CLSTN3-206ENST00000535668 FOXD1Q16676 465 aa16.75■□□□□ 0.27
CLSTN3-206ENST00000535668 ESCO1Q5FWF5 840 aa16.75■□□□□ 0.27
CLSTN3-206ENST00000535668 USP21Q9UK80 565 aa16.75■□□□□ 0.27
CLSTN3-206ENST00000535668 EP400Q96L91 3159 aa16.74■□□□□ 0.27
CLSTN3-206ENST00000535668 STAC3Q96MF2 364 aa16.74■□□□□ 0.27
CLSTN3-206ENST00000535668 FMN2Q9NZ56 1722 aa16.73■□□□□ 0.27
CLSTN3-206ENST00000535668 SPATA31A3Q5VYP0 1347 aa16.73■□□□□ 0.27
CLSTN3-206ENST00000535668 KIF1AQ12756 1690 aa16.73■□□□□ 0.27
CLSTN3-206ENST00000535668 FOXO3O43524 673 aa16.73■□□□□ 0.27
CLSTN3-206ENST00000535668 ADAMTS2O95450 1211 aa16.73■□□□□ 0.27
CLSTN3-206ENST00000535668 WAPLQ7Z5K2 1190 aa16.73■□□□□ 0.27
CLSTN3-206ENST00000535668 ATAD2Q6PL18 1390 aa16.73■□□□□ 0.27
CLSTN3-206ENST00000535668 MARF1Q9Y4F3 1742 aaKnown RBP16.73■□□□□ 0.27
CLSTN3-206ENST00000535668 SLIT2O94813 1529 aa16.72■□□□□ 0.27
CLSTN3-206ENST00000535668 DLC1Q96QB1 1528 aa16.72■□□□□ 0.27
CLSTN3-206ENST00000535668 CCDC125Q86Z20 511 aa16.72■□□□□ 0.27
CLSTN3-206ENST00000535668 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.72■□□□□ 0.27
CLSTN3-206ENST00000535668 PLEKHH1Q9ULM0 1364 aa16.72■□□□□ 0.27
CLSTN3-206ENST00000535668 HRCP23327 699 aa16.71■□□□□ 0.27
CLSTN3-206ENST00000535668 RGL3Q3MIN7 710 aa16.71■□□□□ 0.27
CLSTN3-206ENST00000535668 TMEM132EQ6IEE7 984 aa16.7■□□□□ 0.26
CLSTN3-206ENST00000535668 SBNO1A3KN83 1393 aa16.69■□□□□ 0.26
CLSTN3-206ENST00000535668 DHX57Q6P158 1386 aaKnown RBP16.69■□□□□ 0.26
CLSTN3-206ENST00000535668 GJD4Q96KN9 370 aaPredicted RBP16.68■□□□□ 0.26
CLSTN3-206ENST00000535668 ANKARQ7Z5J8 1434 aa16.68■□□□□ 0.26
CLSTN3-206ENST00000535668 ONECUT3O60422 494 aaPredicted RBP16.67■□□□□ 0.26
CLSTN3-206ENST00000535668 ADGRB1O14514 1584 aa16.67■□□□□ 0.26
CLSTN3-206ENST00000535668 ADGRB2O60241 1585 aa16.67■□□□□ 0.26
CLSTN3-206ENST00000535668 UNC5CLQ8IV45 518 aa16.66■□□□□ 0.26
CLSTN3-206ENST00000535668 STK26Q9P289 416 aa16.66■□□□□ 0.26
CLSTN3-206ENST00000535668 TNS3Q68CZ2 1445 aa16.64■□□□□ 0.25
CLSTN3-206ENST00000535668 PSME1Q06323 249 aa16.64■□□□□ 0.25
CLSTN3-206ENST00000535668 CFAP70Q5T0N1 1121 aa16.64■□□□□ 0.25
CLSTN3-206ENST00000535668 PHF8Q9UPP1 1060 aa16.64■□□□□ 0.25
CLSTN3-206ENST00000535668 ARHGEF10O15013 1369 aa16.64■□□□□ 0.25
CLSTN3-206ENST00000535668 USP32Q8NFA0 1604 aa16.63■□□□□ 0.25
CLSTN3-206ENST00000535668 KRT28Q7Z3Y7 464 aa16.63■□□□□ 0.25
CLSTN3-206ENST00000535668 RALGAPBQ86X10 1494 aa16.61■□□□□ 0.25
CLSTN3-206ENST00000535668 GLI3P10071 1580 aa16.61■□□□□ 0.25
CLSTN3-206ENST00000535668 VPS72Q15906 364 aa16.61■□□□□ 0.25
CLSTN3-206ENST00000535668 NWD2Q9ULI1 1742 aa16.61■□□□□ 0.25
CLSTN3-206ENST00000535668 RAB3GAP2Q9H2M9 1393 aa16.61■□□□□ 0.25
CLSTN3-206ENST00000535668 XPCQ01831 940 aaPredicted RBP16.6■□□□□ 0.25
CLSTN3-206ENST00000535668 EIF3AQ14152 1382 aaKnown RBP16.6■□□□□ 0.25
CLSTN3-206ENST00000535668 PRAM1Q96QH2 718 aa16.59■□□□□ 0.25
CLSTN3-206ENST00000535668 RGPD8O14715 1765 aaPredicted RBP16.57■□□□□ 0.24
CLSTN3-206ENST00000535668 BLMP54132 1417 aaPredicted RBP16.57■□□□□ 0.24
CLSTN3-206ENST00000535668 NUTM2FA1L443 756 aa16.56■□□□□ 0.24
CLSTN3-206ENST00000535668 TRPM3Q9HCF6 1732 aaPredicted RBP16.56■□□□□ 0.24
CLSTN3-206ENST00000535668 ABCA3Q99758 1704 aa16.55■□□□□ 0.24
CLSTN3-206ENST00000535668 TULP4Q9NRJ4 1543 aa16.55■□□□□ 0.24
CLSTN3-206ENST00000535668 ALS2Q96Q42 1657 aa16.54■□□□□ 0.24
CLSTN3-206ENST00000535668 WASLO00401 505 aaPredicted RBP16.53■□□□□ 0.24
CLSTN3-206ENST00000535668 ZRANB1Q9UGI0 708 aa16.53■□□□□ 0.24
CLSTN3-206ENST00000535668 POGKQ9P215 609 aa16.52■□□□□ 0.24
CLSTN3-206ENST00000535668 PRR36Q9H6K5 1346 aa16.51■□□□□ 0.23
CLSTN3-206ENST00000535668 FAM83GA6ND36 823 aa16.51■□□□□ 0.23
CLSTN3-206ENST00000535668 PLCH1Q4KWH8 1693 aa16.5■□□□□ 0.23
CLSTN3-206ENST00000535668 SEPT12Q8IYM1 358 aa16.5■□□□□ 0.23
CLSTN3-206ENST00000535668 GPRASP1Q5JY77 1395 aa16.5■□□□□ 0.23
CLSTN3-206ENST00000535668 NRAPQ86VF7 1730 aa16.48■□□□□ 0.23
CLSTN3-206ENST00000535668 CRYBG1Q9Y4K1 1723 aa16.48■□□□□ 0.23
CLSTN3-206ENST00000535668 BRWD3Q6RI45 1802 aa16.48■□□□□ 0.23
CLSTN3-206ENST00000535668 CABLES1Q8TDN4 633 aa16.48■□□□□ 0.23
CLSTN3-206ENST00000535668 DCAF11Q8TEB1 546 aa16.48■□□□□ 0.23
CLSTN3-206ENST00000535668 POLR3AO14802 1390 aaPredicted RBP16.48■□□□□ 0.23
CLSTN3-206ENST00000535668 COL14A1Q05707 1796 aaKnown RBP16.47■□□□□ 0.23
CLSTN3-206ENST00000535668 TRAK1Q9UPV9 953 aa16.47■□□□□ 0.23
CLSTN3-206ENST00000535668 ATP7BP35670 1465 aa16.47■□□□□ 0.23
CLSTN3-206ENST00000535668 KIAA1210Q9ULL0 1709 aa16.46■□□□□ 0.23
CLSTN3-206ENST00000535668 PMFBP1Q8TBY8 1022 aa16.46■□□□□ 0.23
CLSTN3-206ENST00000535668 SAFB2Q14151 953 aaKnown RBP eCLIP16.45■□□□□ 0.22
CLSTN3-206ENST00000535668 KRT27Q7Z3Y8 459 aa16.45■□□□□ 0.22
CLSTN3-206ENST00000535668 ARHGEF28Q8N1W1 1705 aaKnown RBP16.45■□□□□ 0.22
CLSTN3-206ENST00000535668 DISP2A7MBM2 1401 aa16.45■□□□□ 0.22
CLSTN3-206ENST00000535668 SPATA31A5Q5VU36 1347 aa16.45■□□□□ 0.22
CLSTN3-206ENST00000535668 SPATA31A7Q8IWB4 1347 aa16.45■□□□□ 0.22
CLSTN3-206ENST00000535668 PLEKHG3A1L390 1219 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms