RNA–Protein interactions for RNA: ENST00000534356.1

CASP4-213, Transcript of caspase 4, humanhuman

TSL 1 (best)

Gene CASP4, Length 771 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4-213ENST00000534356 PRPF38BQ5VTL8 546 aaKnown RBP13.47□□□□□ -0.25
CASP4-213ENST00000534356 PPP2R2DQ66LE6 453 aa13.47□□□□□ -0.25
CASP4-213ENST00000534356 ZBTB3Q9H5J0 574 aa13.47□□□□□ -0.25
CASP4-213ENST00000534356 RTL5Q5HYW3 569 aaPredicted RBP13.46□□□□□ -0.25
CASP4-213ENST00000534356 HCSTQ9UBK5 93 aa13.46□□□□□ -0.25
CASP4-213ENST00000534356 NUTM2BA6NNL0 878 aaPredicted RBP13.45□□□□□ -0.26
CASP4-213ENST00000534356 NUTM2EB1AL46 878 aaPredicted RBP13.45□□□□□ -0.26
CASP4-213ENST00000534356 C6orf229H3BNL8 230 aa13.45□□□□□ -0.26
CASP4-213ENST00000534356 NR1I2O75469 434 aa13.45□□□□□ -0.26
CASP4-213ENST00000534356 MTMR2Q13614 643 aa13.45□□□□□ -0.26
CASP4-213ENST00000534356 NUTM2DQ5VT03 806 aaPredicted RBP13.45□□□□□ -0.26
CASP4-213ENST00000534356 NUTM2AQ8IVF1 878 aaPredicted RBP13.45□□□□□ -0.26
CASP4-213ENST00000534356 RFC5P40937 340 aa13.44□□□□□ -0.26
CASP4-213ENST00000534356 RNF19BQ6ZMZ0 732 aa13.44□□□□□ -0.26
CASP4-213ENST00000534356 MTRQ99707 1265 aa13.44□□□□□ -0.26
CASP4-213ENST00000534356 Q3C1V9 767 aa13.43□□□□□ -0.26
CASP4-213ENST00000534356 THAP11Q96EK4 314 aa13.42□□□□□ -0.26
CASP4-213ENST00000534356 TJAP1Q5JTD0 557 aa13.41□□□□□ -0.26
CASP4-213ENST00000534356 BRICD5Q6PL45 260 aa13.41□□□□□ -0.26
CASP4-213ENST00000534356 SALL2Q9Y467 1007 aaPredicted RBP13.4□□□□□ -0.26
CASP4-213ENST00000534356 SPDYE5A6NIY4 337 aa13.38□□□□□ -0.27
CASP4-213ENST00000534356 CFAP99D6REC4 459 aa13.38□□□□□ -0.27
CASP4-213ENST00000534356 ZPR1O75312 459 aa13.38□□□□□ -0.27
CASP4-213ENST00000534356 FMNL1O95466 1100 aaPredicted RBP13.38□□□□□ -0.27
CASP4-213ENST00000534356 RETREG3Q86VR2 466 aa13.38□□□□□ -0.27
CASP4-213ENST00000534356 ZNF516Q92618 1163 aa13.38□□□□□ -0.27
CASP4-213ENST00000534356 PRR7Q8TB68 274 aa13.37□□□□□ -0.27
CASP4-213ENST00000534356 IL21Q9HBE4 155 aa13.37□□□□□ -0.27
CASP4-213ENST00000534356 TLL1O43897 1013 aa13.36□□□□□ -0.27
CASP4-213ENST00000534356 USB1Q9BQ65 265 aaKnown RBP13.36□□□□□ -0.27
CASP4-213ENST00000534356 TMEM259Q4ZIN3 620 aa13.35□□□□□ -0.27
CASP4-213ENST00000534356 AP1G2O75843 785 aa13.34□□□□□ -0.27
CASP4-213ENST00000534356 SPSB2Q99619 263 aa13.34□□□□□ -0.27
CASP4-213ENST00000534356 FAM160A2Q8N612 972 aaPredicted RBP13.32□□□□□ -0.28
CASP4-213ENST00000534356 TSC1Q92574 1164 aa13.32□□□□□ -0.28
CASP4-213ENST00000534356 BANK1Q8NDB2 785 aa13.31□□□□□ -0.28
CASP4-213ENST00000534356 CTDSPL2Q05D32 466 aa13.3□□□□□ -0.28
CASP4-213ENST00000534356 NKX2-3Q8TAU0 364 aa13.3□□□□□ -0.28
CASP4-213ENST00000534356 SNRKQ9NRH2 765 aa13.3□□□□□ -0.28
CASP4-213ENST00000534356 ADH1BP00325 375 aa13.29□□□□□ -0.28
CASP4-213ENST00000534356 HELBQ8NG08 1087 aaPredicted RBP13.29□□□□□ -0.28
CASP4-213ENST00000534356 ITGBL1O95965 494 aaPredicted RBP13.28□□□□□ -0.28
CASP4-213ENST00000534356 FLIIQ13045 1269 aa13.28□□□□□ -0.28
CASP4-213ENST00000534356 MCM6Q14566 821 aa13.28□□□□□ -0.28
CASP4-213ENST00000534356 MSS51Q4VC12 460 aa13.28□□□□□ -0.28
CASP4-213ENST00000534356 USP17L8P0C7I0 530 aa13.27□□□□□ -0.29
CASP4-213ENST00000534356 DESI1Q6ICB0 168 aa13.27□□□□□ -0.29
CASP4-213ENST00000534356 PRDM9Q9NQV7 894 aa13.27□□□□□ -0.29
CASP4-213ENST00000534356 KCNC4Q03721 635 aa13.26□□□□□ -0.29
CASP4-213ENST00000534356 PER1O15534 1290 aaPredicted RBP13.25□□□□□ -0.29
CASP4-213ENST00000534356 JUNDP17535 347 aa13.24□□□□□ -0.29
CASP4-213ENST00000534356 LRRN4Q8WUT4 740 aa13.24□□□□□ -0.29
CASP4-213ENST00000534356 TIMELESSQ9UNS1 1208 aa13.24□□□□□ -0.29
CASP4-213ENST00000534356 C14orf37Q86TY3 774 aa13.23□□□□□ -0.29
CASP4-213ENST00000534356 MTMR14Q8NCE2 650 aa13.23□□□□□ -0.29
CASP4-213ENST00000534356 SLC6A16Q9GZN6 736 aa13.23□□□□□ -0.29
CASP4-213ENST00000534356 DXOO77932 396 aaKnown RBP13.22□□□□□ -0.29
CASP4-213ENST00000534356 MMP16P51512 607 aa13.22□□□□□ -0.29
CASP4-213ENST00000534356 LYPD8Q6UX82 237 aa13.22□□□□□ -0.29
CASP4-213ENST00000534356 HMX1Q9NP08 348 aaPredicted RBP13.21□□□□□ -0.29
CASP4-213ENST00000534356 S1PR4O95977 384 aa13.2□□□□□ -0.3
CASP4-213ENST00000534356 PTPRNQ16849 979 aa13.17□□□□□ -0.3
CASP4-213ENST00000534356 GJD4Q96KN9 370 aaPredicted RBP13.16□□□□□ -0.3
CASP4-213ENST00000534356 SOCS7O14512 581 aa13.15□□□□□ -0.3
CASP4-213ENST00000534356 UBTFP17480 764 aaKnown RBP13.15□□□□□ -0.3
CASP4-213ENST00000534356 ERICH6Q7L0X2 663 aa13.15□□□□□ -0.3
CASP4-213ENST00000534356 EPS8L1Q8TE68 723 aa13.15□□□□□ -0.3
CASP4-213ENST00000534356 TRIM34Q9BYJ4 488 aa13.15□□□□□ -0.3
CASP4-213ENST00000534356 NUDT12Q9BQG2 462 aa13.14□□□□□ -0.31
CASP4-213ENST00000534356 NR6A1Q15406 480 aa13.13□□□□□ -0.31
CASP4-213ENST00000534356 POM121Q96HA1 1249 aa13.13□□□□□ -0.31
CASP4-213ENST00000534356 PPEF1O14829 653 aaPredicted RBP13.12□□□□□ -0.31
CASP4-213ENST00000534356 F12P00748 615 aaPredicted RBP13.12□□□□□ -0.31
CASP4-213ENST00000534356 CCNYL3P0C7X3 344 aa13.12□□□□□ -0.31
CASP4-213ENST00000534356 CLUAP1Q96AJ1 413 aa13.12□□□□□ -0.31
CASP4-213ENST00000534356 EVA1BQ9NVM1 165 aa13.12□□□□□ -0.31
CASP4-213ENST00000534356 MAP10Q9P2G4 905 aa13.12□□□□□ -0.31
CASP4-213ENST00000534356 COG6Q9Y2V7 657 aa13.11□□□□□ -0.31
CASP4-213ENST00000534356 PPP1R18Q6NYC8 613 aa13.1□□□□□ -0.31
CASP4-213ENST00000534356 CCDC24Q8N4L8 307 aa13.1□□□□□ -0.31
CASP4-213ENST00000534356 FCF1Q9Y324 198 aaKnown RBP13.1□□□□□ -0.31
CASP4-213ENST00000534356 RNF223E7ERA6 249 aa13.09□□□□□ -0.31
CASP4-213ENST00000534356 APBB1O00213 710 aa13.09□□□□□ -0.31
CASP4-213ENST00000534356 CTHP32929 405 aa13.09□□□□□ -0.31
CASP4-213ENST00000534356 ZMYND15Q9H091 742 aa13.09□□□□□ -0.31
CASP4-213ENST00000534356 GDPD2Q9HCC8 539 aa13.09□□□□□ -0.31
CASP4-213ENST00000534356 TBC1D2BQ9UPU7 963 aa13.09□□□□□ -0.31
CASP4-213ENST00000534356 KCNH2Q12809 1159 aa13.08□□□□□ -0.32
CASP4-213ENST00000534356 IFFO2Q5TF58 517 aa13.08□□□□□ -0.32
CASP4-213ENST00000534356 PTCRAQ6ISU1 281 aaPredicted RBP13.07□□□□□ -0.32
CASP4-213ENST00000534356 PLA2G2EQ9NZK7 142 aa13.07□□□□□ -0.32
CASP4-213ENST00000534356 RAD21O60216 631 aa13.06□□□□□ -0.32
CASP4-213ENST00000534356 GGCXP38435 758 aa13.06□□□□□ -0.32
CASP4-213ENST00000534356 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.06□□□□□ -0.32
CASP4-213ENST00000534356 NDUFB9Q9Y6M9 179 aa13.06□□□□□ -0.32
CASP4-213ENST00000534356 A6NJR5 290 aa13.04□□□□□ -0.32
CASP4-213ENST00000534356 GPR37L1O60883 481 aa13.04□□□□□ -0.32
CASP4-213ENST00000534356 PRM3Q9NNZ6 103 aa13.04□□□□□ -0.32
CASP4-213ENST00000534356 ANKLE1Q8NAG6 615 aa13.03□□□□□ -0.32
CASP4-213ENST00000534356 ABL2P42684 1182 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms