RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 CFAP70Q5T0N1 1121 aa22.65■■□□□ 1.22
CPSF1-211ENST00000533492 TECPR2O15040 1411 aa22.64■■□□□ 1.21
CPSF1-211ENST00000533492 LRP6O75581 1613 aa22.64■■□□□ 1.21
CPSF1-211ENST00000533492 ESCO1Q5FWF5 840 aa22.63■■□□□ 1.21
CPSF1-211ENST00000533492 YTHDC2Q9H6S0 1430 aaKnown RBP22.63■■□□□ 1.21
CPSF1-211ENST00000533492 DHX57Q6P158 1386 aaKnown RBP22.63■■□□□ 1.21
CPSF1-211ENST00000533492 MYOM2P54296 1465 aa22.61■■□□□ 1.21
CPSF1-211ENST00000533492 ZNF772Q68DY9 489 aaPredicted RBP22.61■■□□□ 1.21
CPSF1-211ENST00000533492 SIRT1Q96EB6 747 aa22.6■■□□□ 1.21
CPSF1-211ENST00000533492 KDM2AQ9Y2K7 1162 aa22.6■■□□□ 1.21
CPSF1-211ENST00000533492 NRXN1Q9ULB1 1477 aa22.6■■□□□ 1.21
CPSF1-211ENST00000533492 NUTM2FA1L443 756 aa22.59■■□□□ 1.21
CPSF1-211ENST00000533492 DCAF11Q8TEB1 546 aa22.59■■□□□ 1.21
CPSF1-211ENST00000533492 PLEKHH1Q9ULM0 1364 aa22.59■■□□□ 1.21
CPSF1-211ENST00000533492 CDC42BPGQ6DT37 1551 aa22.59■■□□□ 1.21
CPSF1-211ENST00000533492 KNDC1Q76NI1 1749 aa22.58■■□□□ 1.21
CPSF1-211ENST00000533492 SOS2Q07890 1332 aaPredicted RBP22.57■■□□□ 1.2
CPSF1-211ENST00000533492 PNPLA6Q8IY17 1366 aa22.57■■□□□ 1.2
CPSF1-211ENST00000533492 LAMC1P11047 1609 aa22.56■■□□□ 1.2
CPSF1-211ENST00000533492 NPHP3Q7Z494 1330 aa22.56■■□□□ 1.2
CPSF1-211ENST00000533492 STAC3Q96MF2 364 aa22.55■■□□□ 1.2
CPSF1-211ENST00000533492 FOXO3O43524 673 aa22.54■■□□□ 1.2
CPSF1-211ENST00000533492 POGKQ9P215 609 aa22.54■■□□□ 1.2
CPSF1-211ENST00000533492 SAFB2Q14151 953 aaKnown RBP eCLIP22.53■■□□□ 1.2
CPSF1-211ENST00000533492 C8orf37Q96NL8 207 aa22.53■■□□□ 1.2
CPSF1-211ENST00000533492 PRAM1Q96QH2 718 aa22.53■■□□□ 1.2
CPSF1-211ENST00000533492 AFF2P51816 1311 aa22.52■■□□□ 1.2
CPSF1-211ENST00000533492 ADAMTS2O95450 1211 aa22.51■■□□□ 1.19
CPSF1-211ENST00000533492 XPCQ01831 940 aaPredicted RBP22.5■■□□□ 1.19
CPSF1-211ENST00000533492 TRAK1Q9UPV9 953 aa22.5■■□□□ 1.19
CPSF1-211ENST00000533492 RXRBP28702 533 aa22.49■■□□□ 1.19
CPSF1-211ENST00000533492 NGLY1Q96IV0 654 aa22.48■■□□□ 1.19
CPSF1-211ENST00000533492 FMN2Q9NZ56 1722 aa22.46■■□□□ 1.19
CPSF1-211ENST00000533492 DLC1Q96QB1 1528 aa22.45■■□□□ 1.18
CPSF1-211ENST00000533492 QTRT2Q9H974 415 aaKnown RBP22.44■■□□□ 1.18
CPSF1-211ENST00000533492 PHF8Q9UPP1 1060 aa22.44■■□□□ 1.18
CPSF1-211ENST00000533492 ADGRB1O14514 1584 aa22.43■■□□□ 1.18
CPSF1-211ENST00000533492 PXDNQ92626 1479 aa22.43■■□□□ 1.18
CPSF1-211ENST00000533492 KRT28Q7Z3Y7 464 aa22.43■■□□□ 1.18
CPSF1-211ENST00000533492 HIRIP3Q9BW71 556 aaPredicted RBP22.41■■□□□ 1.18
CPSF1-211ENST00000533492 KIF1AQ12756 1690 aa22.4■■□□□ 1.18
CPSF1-211ENST00000533492 MINK1Q8N4C8 1332 aaPredicted RBP22.4■■□□□ 1.18
CPSF1-211ENST00000533492 PSME1Q06323 249 aa22.4■■□□□ 1.18
CPSF1-211ENST00000533492 USP21Q9UK80 565 aa22.39■■□□□ 1.17
CPSF1-211ENST00000533492 RGPD8O14715 1765 aaPredicted RBP22.39■■□□□ 1.17
CPSF1-211ENST00000533492 SPATA31A3Q5VYP0 1347 aa22.38■■□□□ 1.17
CPSF1-211ENST00000533492 RBM6P78332 1123 aaKnown RBP22.38■■□□□ 1.17
CPSF1-211ENST00000533492 COL22A1Q8NFW1 1626 aaPredicted RBP22.38■■□□□ 1.17
CPSF1-211ENST00000533492 PMFBP1Q8TBY8 1022 aa22.36■■□□□ 1.17
CPSF1-211ENST00000533492 ANKARQ7Z5J8 1434 aa22.35■■□□□ 1.17
CPSF1-211ENST00000533492 FNBP4Q8N3X1 1017 aaPredicted RBP22.35■■□□□ 1.17
CPSF1-211ENST00000533492 EIF3AQ14152 1382 aaKnown RBP22.35■■□□□ 1.17
CPSF1-211ENST00000533492 WASLO00401 505 aaPredicted RBP22.34■■□□□ 1.17
CPSF1-211ENST00000533492 LMOD2Q6P5Q4 547 aa22.34■■□□□ 1.17
CPSF1-211ENST00000533492 TRPC5Q9UL62 973 aaPredicted RBP22.34■■□□□ 1.17
CPSF1-211ENST00000533492 CDK12Q9NYV4 1490 aaPredicted RBP22.34■■□□□ 1.17
CPSF1-211ENST00000533492 HAP1P54257 671 aaPredicted RBP22.33■■□□□ 1.17
CPSF1-211ENST00000533492 ADGRB2O60241 1585 aa22.33■■□□□ 1.16
CPSF1-211ENST00000533492 SBNO1A3KN83 1393 aa22.3■■□□□ 1.16
CPSF1-211ENST00000533492 PLEKHG5O94827 1062 aa22.3■■□□□ 1.16
CPSF1-211ENST00000533492 TNS3Q68CZ2 1445 aa22.3■■□□□ 1.16
CPSF1-211ENST00000533492 USP32Q8NFA0 1604 aa22.28■■□□□ 1.16
CPSF1-211ENST00000533492 GPRASP1Q5JY77 1395 aa22.28■■□□□ 1.16
CPSF1-211ENST00000533492 NBPF1Q3BBV0 1214 aa22.28■■□□□ 1.16
CPSF1-211ENST00000533492 NGDNQ8NEJ9 315 aaKnown RBP22.28■■□□□ 1.16
CPSF1-211ENST00000533492 UPF1Q92900 1129 aaKnown RBP eCLIP22.28■■□□□ 1.16
CPSF1-211ENST00000533492 PRR36Q9H6K5 1346 aa22.28■■□□□ 1.16
CPSF1-211ENST00000533492 ARHGEF28Q8N1W1 1705 aaKnown RBP22.27■■□□□ 1.16
CPSF1-211ENST00000533492 SIN3AQ96ST3 1273 aa22.27■■□□□ 1.16
CPSF1-211ENST00000533492 TULP4Q9NRJ4 1543 aa22.26■■□□□ 1.15
CPSF1-211ENST00000533492 ARHGEF10O15013 1369 aa22.26■■□□□ 1.15
CPSF1-211ENST00000533492 KIAA1210Q9ULL0 1709 aa22.26■■□□□ 1.15
CPSF1-211ENST00000533492 MARF1Q9Y4F3 1742 aaKnown RBP22.26■■□□□ 1.15
CPSF1-211ENST00000533492 NEUROD1Q13562 356 aa22.26■■□□□ 1.15
CPSF1-211ENST00000533492 CABLES1Q8TDN4 633 aa22.26■■□□□ 1.15
CPSF1-211ENST00000533492 L3MBTL2Q969R5 705 aa22.26■■□□□ 1.15
CPSF1-211ENST00000533492 RGS12O14924 1447 aa22.25■■□□□ 1.15
CPSF1-211ENST00000533492 NUDT16Q96DE0 195 aaKnown RBP22.25■■□□□ 1.15
CPSF1-211ENST00000533492 ATRNO75882 1429 aa22.24■■□□□ 1.15
CPSF1-211ENST00000533492 CDK19Q9BWU1 502 aa22.24■■□□□ 1.15
CPSF1-211ENST00000533492 BCL9LQ86UU0 1499 aa22.23■■□□□ 1.15
CPSF1-211ENST00000533492 PAK3O75914 559 aaPredicted RBP22.22■■□□□ 1.15
CPSF1-211ENST00000533492 UNC5CLQ8IV45 518 aa22.22■■□□□ 1.15
CPSF1-211ENST00000533492 GJD4Q96KN9 370 aaPredicted RBP22.21■■□□□ 1.15
CPSF1-211ENST00000533492 CENPJQ9HC77 1338 aaPredicted RBP22.18■■□□□ 1.14
CPSF1-211ENST00000533492 CCDC61Q9Y6R9 512 aa22.18■■□□□ 1.14
CPSF1-211ENST00000533492 SLIT2O94813 1529 aa22.17■■□□□ 1.14
CPSF1-211ENST00000533492 ATP7BP35670 1465 aa22.16■■□□□ 1.14
CPSF1-211ENST00000533492 ITSN1Q15811 1721 aa22.16■■□□□ 1.14
CPSF1-211ENST00000533492 TRPM3Q9HCF6 1732 aaPredicted RBP22.15■■□□□ 1.14
CPSF1-211ENST00000533492 SRPK2P78362 688 aaKnown RBP22.15■■□□□ 1.14
CPSF1-211ENST00000533492 ATAD2Q6PL18 1390 aa22.14■■□□□ 1.14
CPSF1-211ENST00000533492 FAM83GA6ND36 823 aa22.14■■□□□ 1.13
CPSF1-211ENST00000533492 CCDC9Q9Y3X0 531 aaKnown RBP22.14■■□□□ 1.13
CPSF1-211ENST00000533492 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.13■■□□□ 1.13
CPSF1-211ENST00000533492 ACEP12821 1306 aa22.12■■□□□ 1.13
CPSF1-211ENST00000533492 NBPF8Q3BBV2 869 aa22.12■■□□□ 1.13
CPSF1-211ENST00000533492 ALS2Q96Q42 1657 aa22.11■■□□□ 1.13
CPSF1-211ENST00000533492 PLEKHG3A1L390 1219 aa22.11■■□□□ 1.13
CPSF1-211ENST00000533492 VPS72Q15906 364 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms