RNA–Protein interactions for RNA: ENST00000533012.1

TRAPPC4-211, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 817 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-211ENST00000533012 CENPJQ9HC77 1338 aaPredicted RBP15.87■□□□□ 0.13
TRAPPC4-211ENST00000533012 EIF3AQ14152 1382 aaKnown RBP15.87■□□□□ 0.13
TRAPPC4-211ENST00000533012 MINK1Q8N4C8 1332 aaPredicted RBP15.85■□□□□ 0.13
TRAPPC4-211ENST00000533012 ADGRL3Q9HAR2 1447 aa15.85■□□□□ 0.13
TRAPPC4-211ENST00000533012 HIRIP3Q9BW71 556 aaPredicted RBP15.84■□□□□ 0.13
TRAPPC4-211ENST00000533012 KNDC1Q76NI1 1749 aa15.84■□□□□ 0.13
TRAPPC4-211ENST00000533012 SLAIN2Q9P270 581 aa15.83■□□□□ 0.12
TRAPPC4-211ENST00000533012 ST20-MTHFSA0A0A6YYL1 179 aa15.82■□□□□ 0.12
TRAPPC4-211ENST00000533012 SLC24A1O60721 1099 aa15.82■□□□□ 0.12
TRAPPC4-211ENST00000533012 WASLO00401 505 aaPredicted RBP15.81■□□□□ 0.12
TRAPPC4-211ENST00000533012 DCCP43146 1447 aa15.81■□□□□ 0.12
TRAPPC4-211ENST00000533012 EIF4G2P78344 907 aaKnown RBP eCLIP15.81■□□□□ 0.12
TRAPPC4-211ENST00000533012 PIP4K2BP78356 416 aa15.81■□□□□ 0.12
TRAPPC4-211ENST00000533012 USP47Q96K76 1375 aa15.81■□□□□ 0.12
TRAPPC4-211ENST00000533012 SCAF1Q9H7N4 1312 aaKnown RBP15.79■□□□□ 0.12
TRAPPC4-211ENST00000533012 NUTM2FA1L443 756 aa15.79■□□□□ 0.12
TRAPPC4-211ENST00000533012 FBXO41Q8TF61 875 aa15.79■□□□□ 0.12
TRAPPC4-211ENST00000533012 CDK19Q9BWU1 502 aa15.79■□□□□ 0.12
TRAPPC4-211ENST00000533012 XIRP1Q702N8 1843 aaKnown RBP15.78■□□□□ 0.12
TRAPPC4-211ENST00000533012 EVC2Q86UK5 1308 aa15.78■□□□□ 0.12
TRAPPC4-211ENST00000533012 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.77■□□□□ 0.12
TRAPPC4-211ENST00000533012 ARHGEF28Q8N1W1 1705 aaKnown RBP15.77■□□□□ 0.11
TRAPPC4-211ENST00000533012 HSPA5P11021 654 aaKnown RBP15.76■□□□□ 0.11
TRAPPC4-211ENST00000533012 SRPK2P78362 688 aaKnown RBP15.76■□□□□ 0.11
TRAPPC4-211ENST00000533012 ESCO1Q5FWF5 840 aa15.76■□□□□ 0.11
TRAPPC4-211ENST00000533012 TESK2Q96S53 571 aa15.75■□□□□ 0.11
TRAPPC4-211ENST00000533012 SBNO2Q9Y2G9 1366 aa15.75■□□□□ 0.11
TRAPPC4-211ENST00000533012 NALCNQ8IZF0 1738 aa15.74■□□□□ 0.11
TRAPPC4-211ENST00000533012 TMF1P82094 1093 aa15.74■□□□□ 0.11
TRAPPC4-211ENST00000533012 NUDT16Q96DE0 195 aaKnown RBP15.74■□□□□ 0.11
TRAPPC4-211ENST00000533012 CABP2Q9NPB3 220 aa15.74■□□□□ 0.11
TRAPPC4-211ENST00000533012 MST1RQ04912 1400 aa15.74■□□□□ 0.11
TRAPPC4-211ENST00000533012 C1orf167Q5SNV9 1468 aa15.73■□□□□ 0.11
TRAPPC4-211ENST00000533012 BRINP3Q76B58 766 aa15.73■□□□□ 0.11
TRAPPC4-211ENST00000533012 ORAI2Q96SN7 254 aa15.73■□□□□ 0.11
TRAPPC4-211ENST00000533012 CDC42BPGQ6DT37 1551 aa15.73■□□□□ 0.11
TRAPPC4-211ENST00000533012 CCDC61Q9Y6R9 512 aa15.72■□□□□ 0.11
TRAPPC4-211ENST00000533012 ADGRB2O60241 1585 aa15.71■□□□□ 0.11
TRAPPC4-211ENST00000533012 CDCA8Q53HL2 280 aa15.71■□□□□ 0.11
TRAPPC4-211ENST00000533012 PRR36Q9H6K5 1346 aa15.7■□□□□ 0.1
TRAPPC4-211ENST00000533012 ANKARQ7Z5J8 1434 aa15.7■□□□□ 0.1
TRAPPC4-211ENST00000533012 PUS7Q96PZ0 661 aaKnown RBP15.7■□□□□ 0.1
TRAPPC4-211ENST00000533012 PHF8Q9UPP1 1060 aa15.7■□□□□ 0.1
TRAPPC4-211ENST00000533012 QRICH2Q9H0J4 1663 aa15.7■□□□□ 0.1
TRAPPC4-211ENST00000533012 FOXO3O43524 673 aa15.68■□□□□ 0.1
TRAPPC4-211ENST00000533012 PMFBP1Q8TBY8 1022 aa15.68■□□□□ 0.1
TRAPPC4-211ENST00000533012 NGDNQ8NEJ9 315 aaKnown RBP15.67■□□□□ 0.1
TRAPPC4-211ENST00000533012 CABP1Q9NZU7 370 aa15.67■□□□□ 0.1
TRAPPC4-211ENST00000533012 TULP4Q9NRJ4 1543 aa15.67■□□□□ 0.1
TRAPPC4-211ENST00000533012 ATAD2Q6PL18 1390 aa15.66■□□□□ 0.1
TRAPPC4-211ENST00000533012 PLEKHG3A1L390 1219 aa15.66■□□□□ 0.1
TRAPPC4-211ENST00000533012 FMN2Q9NZ56 1722 aa15.65■□□□□ 0.1
TRAPPC4-211ENST00000533012 PSME1Q06323 249 aa15.65■□□□□ 0.1
TRAPPC4-211ENST00000533012 TMC1Q8TDI8 760 aa15.65■□□□□ 0.1
TRAPPC4-211ENST00000533012 NPHP3Q7Z494 1330 aa15.65■□□□□ 0.1
TRAPPC4-211ENST00000533012 DISP3Q9P2K9 1392 aa15.64■□□□□ 0.09
TRAPPC4-211ENST00000533012 HSPA1LP34931 641 aa15.64■□□□□ 0.09
TRAPPC4-211ENST00000533012 ILDR1Q86SU0 546 aaPredicted RBP15.64■□□□□ 0.09
TRAPPC4-211ENST00000533012 DDX17Q92841 729 aaKnown RBP15.64■□□□□ 0.09
TRAPPC4-211ENST00000533012 PPIP5K1Q6PFW1 1433 aa15.63■□□□□ 0.09
TRAPPC4-211ENST00000533012 KRT28Q7Z3Y7 464 aa15.63■□□□□ 0.09
TRAPPC4-211ENST00000533012 POLR3GLQ9BT43 218 aa15.63■□□□□ 0.09
TRAPPC4-211ENST00000533012 ATP7BP35670 1465 aa15.63■□□□□ 0.09
TRAPPC4-211ENST00000533012 ACEP12821 1306 aa15.63■□□□□ 0.09
TRAPPC4-211ENST00000533012 ROBO1Q9Y6N7 1651 aa15.62■□□□□ 0.09
TRAPPC4-211ENST00000533012 XPCQ01831 940 aaPredicted RBP15.61■□□□□ 0.09
TRAPPC4-211ENST00000533012 LRRC59Q96AG4 307 aaKnown RBP15.61■□□□□ 0.09
TRAPPC4-211ENST00000533012 ZNF692Q9BU19 519 aaPredicted RBP15.61■□□□□ 0.09
TRAPPC4-211ENST00000533012 SLC12A5Q9H2X9 1139 aa15.61■□□□□ 0.09
TRAPPC4-211ENST00000533012 C11orf95C9JLR9 678 aaPredicted RBP15.6■□□□□ 0.09
TRAPPC4-211ENST00000533012 SOS2Q07890 1332 aaPredicted RBP15.6■□□□□ 0.09
TRAPPC4-211ENST00000533012 USP32Q8NFA0 1604 aa15.6■□□□□ 0.09
TRAPPC4-211ENST00000533012 HDGFL2Q7Z4V5 671 aaPredicted RBP15.59■□□□□ 0.09
TRAPPC4-211ENST00000533012 TERF2IPQ9NYB0 399 aa15.59■□□□□ 0.09
TRAPPC4-211ENST00000533012 POLR3AO14802 1390 aaPredicted RBP15.58■□□□□ 0.08
TRAPPC4-211ENST00000533012 NINLQ9Y2I6 1382 aa15.58■□□□□ 0.08
TRAPPC4-211ENST00000533012 PAK3O75914 559 aaPredicted RBP15.57■□□□□ 0.08
TRAPPC4-211ENST00000533012 AHDC1Q5TGY3 1603 aaPredicted RBP15.56■□□□□ 0.08
TRAPPC4-211ENST00000533012 KIF1AQ12756 1690 aa15.56■□□□□ 0.08
TRAPPC4-211ENST00000533012 RGPD8O14715 1765 aaPredicted RBP15.56■□□□□ 0.08
TRAPPC4-211ENST00000533012 KIF7Q2M1P5 1343 aa15.55■□□□□ 0.08
TRAPPC4-211ENST00000533012 LMOD2Q6P5Q4 547 aa15.55■□□□□ 0.08
TRAPPC4-211ENST00000533012 SBNO1A3KN83 1393 aa15.54■□□□□ 0.08
TRAPPC4-211ENST00000533012 SPATA31A3Q5VYP0 1347 aa15.54■□□□□ 0.08
TRAPPC4-211ENST00000533012 ITSN1Q15811 1721 aa15.54■□□□□ 0.08
TRAPPC4-211ENST00000533012 CPSF1Q10570 1443 aaKnown RBP15.53■□□□□ 0.08
TRAPPC4-211ENST00000533012 BRD4O60885 1362 aaPredicted RBP15.53■□□□□ 0.08
TRAPPC4-211ENST00000533012 KTN1Q86UP2 1357 aaKnown RBP15.53■□□□□ 0.08
TRAPPC4-211ENST00000533012 PXDNQ92626 1479 aa15.52■□□□□ 0.08
TRAPPC4-211ENST00000533012 JCADQ9P266 1359 aa15.52■□□□□ 0.08
TRAPPC4-211ENST00000533012 WASHC2AQ641Q2 1341 aa15.52■□□□□ 0.08
TRAPPC4-211ENST00000533012 NHSL1Q5SYE7 1610 aa15.52■□□□□ 0.08
TRAPPC4-211ENST00000533012 PHLPP1O60346 1717 aa15.51■□□□□ 0.07
TRAPPC4-211ENST00000533012 ANKRD36BQ8N2N9 1353 aa15.51■□□□□ 0.07
TRAPPC4-211ENST00000533012 CCDC7Q96M83 1385 aa15.51■□□□□ 0.07
TRAPPC4-211ENST00000533012 TOPAZ1Q8N9V7 1692 aa15.51■□□□□ 0.07
TRAPPC4-211ENST00000533012 ABTB2Q8N961 1025 aa15.51■□□□□ 0.07
TRAPPC4-211ENST00000533012 USP6P35125 1406 aa15.51■□□□□ 0.07
TRAPPC4-211ENST00000533012 TTC21BQ7Z4L5 1316 aa15.5■□□□□ 0.07
TRAPPC4-211ENST00000533012 PANK3Q9H999 370 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms