RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 ADGRL2O95490 1459 aa13.08□□□□□ -0.32
CD44-232ENST00000531118 ANKRD30AQ9BXX3 1397 aa13.07□□□□□ -0.32
CD44-232ENST00000531118 ADGRL3Q9HAR2 1447 aa13.07□□□□□ -0.32
CD44-232ENST00000531118 IQGAP3Q86VI3 1631 aa13.07□□□□□ -0.32
CD44-232ENST00000531118 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.07□□□□□ -0.32
CD44-232ENST00000531118 PTCH1Q13635 1447 aa13.06□□□□□ -0.32
CD44-232ENST00000531118 LRRC59Q96AG4 307 aaKnown RBP13.06□□□□□ -0.32
CD44-232ENST00000531118 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.05□□□□□ -0.32
CD44-232ENST00000531118 SPHKAPQ2M3C7 1700 aa13.05□□□□□ -0.32
CD44-232ENST00000531118 HDGFP51858 240 aaKnown RBP13.04□□□□□ -0.32
CD44-232ENST00000531118 KANK4Q5T7N3 995 aaPredicted RBP13.04□□□□□ -0.32
CD44-232ENST00000531118 DDX17Q92841 729 aaKnown RBP13.04□□□□□ -0.32
CD44-232ENST00000531118 ADAMTS2O95450 1211 aa13.03□□□□□ -0.32
CD44-232ENST00000531118 TRPC5Q9UL62 973 aaPredicted RBP13.03□□□□□ -0.32
CD44-232ENST00000531118 AMOTL2Q9Y2J4 779 aa13.03□□□□□ -0.32
CD44-232ENST00000531118 BRWD3Q6RI45 1802 aa13.03□□□□□ -0.32
CD44-232ENST00000531118 USP21Q9UK80 565 aa13.02□□□□□ -0.33
CD44-232ENST00000531118 MYOM2P54296 1465 aa13.02□□□□□ -0.33
CD44-232ENST00000531118 C1orf167Q5SNV9 1468 aa13.01□□□□□ -0.33
CD44-232ENST00000531118 GLI3P10071 1580 aa13□□□□□ -0.33
CD44-232ENST00000531118 BLMP54132 1417 aaPredicted RBP13□□□□□ -0.33
CD44-232ENST00000531118 ANKRD50Q9ULJ7 1429 aa13□□□□□ -0.33
CD44-232ENST00000531118 CHGAP10645 457 aaKnown RBP13□□□□□ -0.33
CD44-232ENST00000531118 CCDC125Q86Z20 511 aa12.99□□□□□ -0.33
CD44-232ENST00000531118 CHIC2Q9UKJ5 165 aa12.99□□□□□ -0.33
CD44-232ENST00000531118 SPDYE2BA6NHP3 402 aa12.98□□□□□ -0.33
CD44-232ENST00000531118 SPDYE6P0CI01 402 aa12.98□□□□□ -0.33
CD44-232ENST00000531118 FKBP8Q14318 412 aa12.98□□□□□ -0.33
CD44-232ENST00000531118 SPDYE2Q495Y8 402 aa12.98□□□□□ -0.33
CD44-232ENST00000531118 FNBP4Q8N3X1 1017 aaPredicted RBP12.98□□□□□ -0.33
CD44-232ENST00000531118 BCL9LQ86UU0 1499 aa12.97□□□□□ -0.33
CD44-232ENST00000531118 RBM42Q9BTD8 480 aaKnown RBP12.97□□□□□ -0.33
CD44-232ENST00000531118 METP08581 1390 aa12.96□□□□□ -0.33
CD44-232ENST00000531118 SOS2Q07890 1332 aaPredicted RBP12.96□□□□□ -0.33
CD44-232ENST00000531118 SPDYE4A6NLX3 237 aa12.96□□□□□ -0.33
CD44-232ENST00000531118 NEXMIFQ5QGS0 1516 aa12.94□□□□□ -0.34
CD44-232ENST00000531118 RALGAPBQ86X10 1494 aa12.94□□□□□ -0.34
CD44-232ENST00000531118 PXDNQ92626 1479 aa12.93□□□□□ -0.34
CD44-232ENST00000531118 CDC42BPGQ6DT37 1551 aa12.93□□□□□ -0.34
CD44-232ENST00000531118 USP32Q8NFA0 1604 aa12.92□□□□□ -0.34
CD44-232ENST00000531118 DEFB132Q7Z7B7 95 aa12.92□□□□□ -0.34
CD44-232ENST00000531118 PLCH1Q4KWH8 1693 aa12.92□□□□□ -0.34
CD44-232ENST00000531118 PRAG1Q86YV5 1406 aa12.91□□□□□ -0.34
CD44-232ENST00000531118 SLIT2O94813 1529 aa12.91□□□□□ -0.34
CD44-232ENST00000531118 ABCA3Q99758 1704 aa12.9□□□□□ -0.34
CD44-232ENST00000531118 CLTCL1P53675 1640 aa12.89□□□□□ -0.35
CD44-232ENST00000531118 RGPD1P0DJD0 1748 aa12.89□□□□□ -0.35
CD44-232ENST00000531118 GJD4Q96KN9 370 aaPredicted RBP12.89□□□□□ -0.35
CD44-232ENST00000531118 NWD2Q9ULI1 1742 aa12.88□□□□□ -0.35
CD44-232ENST00000531118 ORAI2Q96SN7 254 aa12.88□□□□□ -0.35
CD44-232ENST00000531118 ZNF692Q9BU19 519 aaPredicted RBP12.88□□□□□ -0.35
CD44-232ENST00000531118 ROBO2Q9HCK4 1378 aa12.87□□□□□ -0.35
CD44-232ENST00000531118 KIF1BO60333 1816 aa12.87□□□□□ -0.35
CD44-232ENST00000531118 TNS1Q9HBL0 1735 aaKnown RBP12.87□□□□□ -0.35
CD44-232ENST00000531118 PSDA5PKW4 1024 aaPredicted RBP12.86□□□□□ -0.35
CD44-232ENST00000531118 SF3B2Q13435 895 aaKnown RBP12.86□□□□□ -0.35
CD44-232ENST00000531118 SSUH2Q9Y2M2 353 aa12.86□□□□□ -0.35
CD44-232ENST00000531118 KIF1AQ12756 1690 aa12.86□□□□□ -0.35
CD44-232ENST00000531118 HRCP23327 699 aa12.85□□□□□ -0.35
CD44-232ENST00000531118 NPHP3Q7Z494 1330 aa12.85□□□□□ -0.35
CD44-232ENST00000531118 HFM1A2PYH4 1435 aa12.84□□□□□ -0.35
CD44-232ENST00000531118 NRAPQ86VF7 1730 aa12.84□□□□□ -0.35
CD44-232ENST00000531118 UNC5CLQ8IV45 518 aa12.82□□□□□ -0.36
CD44-232ENST00000531118 FMN2Q9NZ56 1722 aa12.82□□□□□ -0.36
CD44-232ENST00000531118 ZNF326Q5BKZ1 582 aaKnown RBP12.81□□□□□ -0.36
CD44-232ENST00000531118 PPLO60437 1756 aa12.81□□□□□ -0.36
CD44-232ENST00000531118 ADGRB2O60241 1585 aa12.81□□□□□ -0.36
CD44-232ENST00000531118 SEPT12Q8IYM1 358 aa12.8□□□□□ -0.36
CD44-232ENST00000531118 NUP155O75694 1391 aa12.8□□□□□ -0.36
CD44-232ENST00000531118 KNDC1Q76NI1 1749 aa12.79□□□□□ -0.36
CD44-232ENST00000531118 BAG6P46379 1132 aa12.79□□□□□ -0.36
CD44-232ENST00000531118 XPCQ01831 940 aaPredicted RBP12.79□□□□□ -0.36
CD44-232ENST00000531118 FAM50AQ14320 339 aaKnown RBP12.79□□□□□ -0.36
CD44-232ENST00000531118 ROCK1Q13464 1354 aa12.79□□□□□ -0.36
CD44-232ENST00000531118 DISP2A7MBM2 1401 aa12.79□□□□□ -0.36
CD44-232ENST00000531118 RREB1Q92766 1687 aa12.78□□□□□ -0.36
CD44-232ENST00000531118 PROM2Q8N271 834 aa12.78□□□□□ -0.36
CD44-232ENST00000531118 AKT1S1Q96B36 256 aa12.78□□□□□ -0.36
CD44-232ENST00000531118 IFT172Q9UG01 1749 aa12.78□□□□□ -0.36
CD44-232ENST00000531118 CCDC144AA2RUR9 1427 aa12.78□□□□□ -0.36
CD44-232ENST00000531118 KRT27Q7Z3Y8 459 aa12.77□□□□□ -0.37
CD44-232ENST00000531118 LRPPRCP42704 1394 aaKnown RBP12.77□□□□□ -0.37
CD44-232ENST00000531118 NAIPQ13075 1403 aa12.77□□□□□ -0.37
CD44-232ENST00000531118 THSD7AQ9UPZ6 1657 aa12.77□□□□□ -0.37
CD44-232ENST00000531118 YY1P25490 414 aa12.76□□□□□ -0.37
CD44-232ENST00000531118 VPS72Q15906 364 aa12.76□□□□□ -0.37
CD44-232ENST00000531118 ESCO1Q5FWF5 840 aa12.76□□□□□ -0.37
CD44-232ENST00000531118 TNS3Q68CZ2 1445 aa12.76□□□□□ -0.37
CD44-232ENST00000531118 NUP188Q5SRE5 1749 aa12.76□□□□□ -0.37
CD44-232ENST00000531118 RGPD8O14715 1765 aaPredicted RBP12.74□□□□□ -0.37
CD44-232ENST00000531118 SPATA31A3Q5VYP0 1347 aa12.74□□□□□ -0.37
CD44-232ENST00000531118 R3HDM1Q15032 1099 aaKnown RBP12.74□□□□□ -0.37
CD44-232ENST00000531118 FOXO3O43524 673 aa12.73□□□□□ -0.37
CD44-232ENST00000531118 TECPR2O15040 1411 aa12.72□□□□□ -0.37
CD44-232ENST00000531118 ONECUT3O60422 494 aaPredicted RBP12.72□□□□□ -0.37
CD44-232ENST00000531118 COL14A1Q05707 1796 aaKnown RBP12.71□□□□□ -0.37
CD44-232ENST00000531118 CAMTA1Q9Y6Y1 1673 aa12.71□□□□□ -0.37
CD44-232ENST00000531118 EN1Q05925 392 aaPredicted RBP12.71□□□□□ -0.37
CD44-232ENST00000531118 CCDC9Q9Y3X0 531 aaKnown RBP12.71□□□□□ -0.37
CD44-232ENST00000531118 CRYBG1Q9Y4K1 1723 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms