RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 PIK3C2GO75747 1445 aa16.95■□□□□ 0.3
VPS28-214ENST00000531032 RGL3Q3MIN7 710 aa16.94■□□□□ 0.3
VPS28-214ENST00000531032 LRPPRCP42704 1394 aaKnown RBP16.93■□□□□ 0.3
VPS28-214ENST00000531032 ACIN1Q9UKV3 1341 aaKnown RBP16.93■□□□□ 0.3
VPS28-214ENST00000531032 COL22A1Q8NFW1 1626 aaPredicted RBP16.92■□□□□ 0.3
VPS28-214ENST00000531032 ABCC11Q96J66 1382 aa16.92■□□□□ 0.3
VPS28-214ENST00000531032 C8orf37Q96NL8 207 aa16.92■□□□□ 0.3
VPS28-214ENST00000531032 UPF1Q92900 1129 aaKnown RBP eCLIP16.9■□□□□ 0.3
VPS28-214ENST00000531032 PXDNQ92626 1479 aa16.89■□□□□ 0.29
VPS28-214ENST00000531032 NRXN1Q9ULB1 1477 aa16.89■□□□□ 0.29
VPS28-214ENST00000531032 STK26Q9P289 416 aa16.89■□□□□ 0.29
VPS28-214ENST00000531032 NPHP3Q7Z494 1330 aa16.89■□□□□ 0.29
VPS28-214ENST00000531032 YTHDC2Q9H6S0 1430 aaKnown RBP16.88■□□□□ 0.29
VPS28-214ENST00000531032 ESCO1Q5FWF5 840 aa16.88■□□□□ 0.29
VPS28-214ENST00000531032 TMEM132EQ6IEE7 984 aa16.88■□□□□ 0.29
VPS28-214ENST00000531032 WAPLQ7Z5K2 1190 aa16.88■□□□□ 0.29
VPS28-214ENST00000531032 PLEKHH1Q9ULM0 1364 aa16.88■□□□□ 0.29
VPS28-214ENST00000531032 RGS12O14924 1447 aa16.87■□□□□ 0.29
VPS28-214ENST00000531032 MYOM2P54296 1465 aa16.87■□□□□ 0.29
VPS28-214ENST00000531032 ADAMTS2O95450 1211 aa16.87■□□□□ 0.29
VPS28-214ENST00000531032 RBM6P78332 1123 aaKnown RBP16.87■□□□□ 0.29
VPS28-214ENST00000531032 QTRT2Q9H974 415 aaKnown RBP16.87■□□□□ 0.29
VPS28-214ENST00000531032 FMN2Q9NZ56 1722 aa16.87■□□□□ 0.29
VPS28-214ENST00000531032 NGLY1Q96IV0 654 aa16.86■□□□□ 0.29
VPS28-214ENST00000531032 C14orf93Q9H972 538 aaKnown RBP16.85■□□□□ 0.29
VPS28-214ENST00000531032 FOXO3O43524 673 aa16.84■□□□□ 0.29
VPS28-214ENST00000531032 SIRT1Q96EB6 747 aa16.84■□□□□ 0.29
VPS28-214ENST00000531032 RAB3GAP2Q9H2M9 1393 aa16.84■□□□□ 0.29
VPS28-214ENST00000531032 KIF1AQ12756 1690 aa16.84■□□□□ 0.29
VPS28-214ENST00000531032 FNBP4Q8N3X1 1017 aaPredicted RBP16.83■□□□□ 0.28
VPS28-214ENST00000531032 MARF1Q9Y4F3 1742 aaKnown RBP16.83■□□□□ 0.28
VPS28-214ENST00000531032 USP21Q9UK80 565 aa16.82■□□□□ 0.28
VPS28-214ENST00000531032 NUTM2FA1L443 756 aa16.81■□□□□ 0.28
VPS28-214ENST00000531032 XPCQ01831 940 aaPredicted RBP16.81■□□□□ 0.28
VPS28-214ENST00000531032 ATRNO75882 1429 aa16.8■□□□□ 0.28
VPS28-214ENST00000531032 DHX57Q6P158 1386 aaKnown RBP16.8■□□□□ 0.28
VPS28-214ENST00000531032 CFAP70Q5T0N1 1121 aa16.8■□□□□ 0.28
VPS28-214ENST00000531032 TRPC5Q9UL62 973 aaPredicted RBP16.8■□□□□ 0.28
VPS28-214ENST00000531032 DLC1Q96QB1 1528 aa16.79■□□□□ 0.28
VPS28-214ENST00000531032 RGPD8O14715 1765 aaPredicted RBP16.78■□□□□ 0.28
VPS28-214ENST00000531032 BCL9LQ86UU0 1499 aa16.78■□□□□ 0.28
VPS28-214ENST00000531032 ADGRB1O14514 1584 aa16.77■□□□□ 0.28
VPS28-214ENST00000531032 SPATA31A3Q5VYP0 1347 aa16.77■□□□□ 0.28
VPS28-214ENST00000531032 ADGRB2O60241 1585 aa16.76■□□□□ 0.27
VPS28-214ENST00000531032 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.76■□□□□ 0.27
VPS28-214ENST00000531032 PRAM1Q96QH2 718 aa16.75■□□□□ 0.27
VPS28-214ENST00000531032 ATAD2Q6PL18 1390 aa16.74■□□□□ 0.27
VPS28-214ENST00000531032 USP32Q8NFA0 1604 aa16.74■□□□□ 0.27
VPS28-214ENST00000531032 TNS3Q68CZ2 1445 aa16.73■□□□□ 0.27
VPS28-214ENST00000531032 KRT28Q7Z3Y7 464 aa16.73■□□□□ 0.27
VPS28-214ENST00000531032 PHF8Q9UPP1 1060 aa16.73■□□□□ 0.27
VPS28-214ENST00000531032 SLIT2O94813 1529 aa16.73■□□□□ 0.27
VPS28-214ENST00000531032 ANKARQ7Z5J8 1434 aa16.72■□□□□ 0.27
VPS28-214ENST00000531032 SAFB2Q14151 953 aaKnown RBP eCLIP16.71■□□□□ 0.27
VPS28-214ENST00000531032 SBNO1A3KN83 1393 aa16.71■□□□□ 0.27
VPS28-214ENST00000531032 HRCP23327 699 aa16.7■□□□□ 0.26
VPS28-214ENST00000531032 PSME1Q06323 249 aa16.7■□□□□ 0.26
VPS28-214ENST00000531032 POGKQ9P215 609 aa16.7■□□□□ 0.26
VPS28-214ENST00000531032 ABCA3Q99758 1704 aa16.7■□□□□ 0.26
VPS28-214ENST00000531032 GJD4Q96KN9 370 aaPredicted RBP16.69■□□□□ 0.26
VPS28-214ENST00000531032 EP400Q96L91 3159 aa16.69■□□□□ 0.26
VPS28-214ENST00000531032 GLI3P10071 1580 aa16.68■□□□□ 0.26
VPS28-214ENST00000531032 UNC5CLQ8IV45 518 aa16.68■□□□□ 0.26
VPS28-214ENST00000531032 STAC3Q96MF2 364 aa16.68■□□□□ 0.26
VPS28-214ENST00000531032 ARHGEF10O15013 1369 aa16.67■□□□□ 0.26
VPS28-214ENST00000531032 DCAF11Q8TEB1 546 aa16.67■□□□□ 0.26
VPS28-214ENST00000531032 TRAK1Q9UPV9 953 aa16.67■□□□□ 0.26
VPS28-214ENST00000531032 TRPM3Q9HCF6 1732 aaPredicted RBP16.67■□□□□ 0.26
VPS28-214ENST00000531032 RALGAPBQ86X10 1494 aa16.67■□□□□ 0.26
VPS28-214ENST00000531032 EIF3AQ14152 1382 aaKnown RBP16.66■□□□□ 0.26
VPS28-214ENST00000531032 TULP4Q9NRJ4 1543 aa16.66■□□□□ 0.26
VPS28-214ENST00000531032 PLCH1Q4KWH8 1693 aa16.66■□□□□ 0.26
VPS28-214ENST00000531032 NWD2Q9ULI1 1742 aa16.66■□□□□ 0.26
VPS28-214ENST00000531032 KDM2AQ9Y2K7 1162 aa16.66■□□□□ 0.26
VPS28-214ENST00000531032 ARHGEF28Q8N1W1 1705 aaKnown RBP16.65■□□□□ 0.26
VPS28-214ENST00000531032 PMFBP1Q8TBY8 1022 aa16.64■□□□□ 0.25
VPS28-214ENST00000531032 CABLES1Q8TDN4 633 aa16.64■□□□□ 0.25
VPS28-214ENST00000531032 HIRIP3Q9BW71 556 aaPredicted RBP16.64■□□□□ 0.25
VPS28-214ENST00000531032 ALS2Q96Q42 1657 aa16.64■□□□□ 0.25
VPS28-214ENST00000531032 PRR36Q9H6K5 1346 aa16.64■□□□□ 0.25
VPS28-214ENST00000531032 HAP1P54257 671 aaPredicted RBP16.63■□□□□ 0.25
VPS28-214ENST00000531032 MINK1Q8N4C8 1332 aaPredicted RBP16.63■□□□□ 0.25
VPS28-214ENST00000531032 WASLO00401 505 aaPredicted RBP16.61■□□□□ 0.25
VPS28-214ENST00000531032 VPS72Q15906 364 aa16.61■□□□□ 0.25
VPS28-214ENST00000531032 LMOD2Q6P5Q4 547 aa16.61■□□□□ 0.25
VPS28-214ENST00000531032 CCDC125Q86Z20 511 aa16.61■□□□□ 0.25
VPS28-214ENST00000531032 GPRASP1Q5JY77 1395 aa16.61■□□□□ 0.25
VPS28-214ENST00000531032 BRWD3Q6RI45 1802 aa16.6■□□□□ 0.25
VPS28-214ENST00000531032 ITSN1Q15811 1721 aa16.59■□□□□ 0.25
VPS28-214ENST00000531032 ATP7BP35670 1465 aa16.59■□□□□ 0.25
VPS28-214ENST00000531032 NRAPQ86VF7 1730 aa16.59■□□□□ 0.25
VPS28-214ENST00000531032 KIAA1210Q9ULL0 1709 aa16.59■□□□□ 0.25
VPS28-214ENST00000531032 CRYBG1Q9Y4K1 1723 aa16.59■□□□□ 0.25
VPS28-214ENST00000531032 FAM83GA6ND36 823 aa16.58■□□□□ 0.24
VPS28-214ENST00000531032 PLEKHG5O94827 1062 aa16.58■□□□□ 0.24
VPS28-214ENST00000531032 ONECUT3O60422 494 aaPredicted RBP16.57■□□□□ 0.24
VPS28-214ENST00000531032 COL14A1Q05707 1796 aaKnown RBP16.56■□□□□ 0.24
VPS28-214ENST00000531032 BLMP54132 1417 aaPredicted RBP16.56■□□□□ 0.24
VPS28-214ENST00000531032 SEPT12Q8IYM1 358 aa16.56■□□□□ 0.24
VPS28-214ENST00000531032 TOPAZ1Q8N9V7 1692 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms