RNA–Protein interactions for RNA: ENST00000530579.6

NEDD8-MDP1-201, Transcript of NEDD8-MDP1 readthrough, humanhuman

TSL 2

Gene NEDD8-MDP1, Length 471 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-MDP1-201ENST00000530579 RBM33Q96EV2 1170 aaKnown RBP11.78□□□□□ -0.52
NEDD8-MDP1-201ENST00000530579 CDK19Q9BWU1 502 aa11.78□□□□□ -0.52
NEDD8-MDP1-201ENST00000530579 DIEXFQ68CQ4 756 aaKnown RBP11.77□□□□□ -0.53
NEDD8-MDP1-201ENST00000530579 CABP2Q9NPB3 220 aa11.77□□□□□ -0.53
NEDD8-MDP1-201ENST00000530579 SBNO2Q9Y2G9 1366 aa11.77□□□□□ -0.53
NEDD8-MDP1-201ENST00000530579 WASLO00401 505 aaPredicted RBP11.76□□□□□ -0.53
NEDD8-MDP1-201ENST00000530579 TMC1Q8TDI8 760 aa11.76□□□□□ -0.53
NEDD8-MDP1-201ENST00000530579 PTCH1Q13635 1447 aa11.76□□□□□ -0.53
NEDD8-MDP1-201ENST00000530579 CPS1P31327 1500 aa11.75□□□□□ -0.53
NEDD8-MDP1-201ENST00000530579 ARHGEF28Q8N1W1 1705 aaKnown RBP11.74□□□□□ -0.53
NEDD8-MDP1-201ENST00000530579 PUS7Q96PZ0 661 aaKnown RBP11.74□□□□□ -0.53
NEDD8-MDP1-201ENST00000530579 ZNF335Q9H4Z2 1342 aaPredicted RBP11.74□□□□□ -0.53
NEDD8-MDP1-201ENST00000530579 STRCQ7RTU9 1775 aa11.74□□□□□ -0.53
NEDD8-MDP1-201ENST00000530579 NUTM2FA1L443 756 aa11.73□□□□□ -0.53
NEDD8-MDP1-201ENST00000530579 QRICH2Q9H0J4 1663 aa11.72□□□□□ -0.53
NEDD8-MDP1-201ENST00000530579 NUDT16Q96DE0 195 aaKnown RBP11.72□□□□□ -0.53
NEDD8-MDP1-201ENST00000530579 KNDC1Q76NI1 1749 aa11.72□□□□□ -0.53
NEDD8-MDP1-201ENST00000530579 XRN1Q8IZH2 1706 aaKnown RBP11.72□□□□□ -0.53
NEDD8-MDP1-201ENST00000530579 SLC12A5Q9H2X9 1139 aa11.71□□□□□ -0.53
NEDD8-MDP1-201ENST00000530579 PANK3Q9H999 370 aa11.71□□□□□ -0.53
NEDD8-MDP1-201ENST00000530579 TMEM94Q12767 1356 aa11.7□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 ATAD2Q6PL18 1390 aa11.7□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 C19orf44Q9H6X5 657 aa11.7□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 CABP1Q9NZU7 370 aa11.7□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 TULP4Q9NRJ4 1543 aa11.7□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 NKTRP30414 1462 aaKnown RBP11.7□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 CHD2O14647 1828 aaKnown RBP11.7□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 ATF3P18847 181 aa11.69□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 CCDC61Q9Y6R9 512 aa11.69□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 NWD1Q149M9 1564 aa11.69□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 CNGB1Q14028 1251 aaPredicted RBP11.68□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.67□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 HDGFL2Q7Z4V5 671 aaPredicted RBP11.67□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 TERF2IPQ9NYB0 399 aa11.67□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 KNSTRNQ9Y448 316 aa11.67□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 ADGRL3Q9HAR2 1447 aa11.67□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 PRR36Q9H6K5 1346 aa11.66□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 NCOA3Q9Y6Q9 1424 aa11.66□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 MSH6P52701 1360 aa11.66□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 ANP32CO43423 234 aa11.65□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 ESCO1Q5FWF5 840 aa11.65□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 CADPS2Q86UW7 1296 aa11.65□□□□□ -0.54
NEDD8-MDP1-201ENST00000530579 NINLQ9Y2I6 1382 aa11.65□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 LRRC7Q96NW7 1537 aa11.65□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 PPIP5K1Q6PFW1 1433 aa11.64□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 NGDNQ8NEJ9 315 aaKnown RBP11.64□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 PMFBP1Q8TBY8 1022 aa11.64□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 CARD14Q9BXL6 1004 aa11.64□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 ADGRB2O60241 1585 aa11.63□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 PLEKHG3A1L390 1219 aa11.63□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 PER1O15534 1290 aaPredicted RBP11.63□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 ZNF692Q9BU19 519 aaPredicted RBP11.63□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 PHF8Q9UPP1 1060 aa11.63□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 ACEP12821 1306 aa11.62□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 ANKARQ7Z5J8 1434 aa11.62□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 MIER1Q8N108 512 aa11.62□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 ANKRD36BQ8N2N9 1353 aa11.62□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 STRCP1A6NGW2 1772 aa11.62□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 CC2D1BQ5T0F9 858 aaKnown RBP11.61□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 ORAI2Q96SN7 254 aa11.61□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 KTN1Q86UP2 1357 aaKnown RBP11.61□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 ATP7BP35670 1465 aa11.61□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 CDC42BPGQ6DT37 1551 aa11.6□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 A0A1W2PP64 1363 aa11.6□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.6□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 SLAIN2Q9P270 581 aa11.6□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 NSD3Q9BZ95 1437 aa11.6□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 PSME1Q06323 249 aa11.59□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 NALCNQ8IZF0 1738 aa11.59□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 DCCP43146 1447 aa11.59□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 CGNL1Q0VF96 1302 aa11.59□□□□□ -0.55
NEDD8-MDP1-201ENST00000530579 AMER1Q5JTC6 1135 aaPredicted RBP11.58□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 C1orf167Q5SNV9 1468 aa11.57□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 FOXO3O43524 673 aa11.57□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 RALBP1Q15311 655 aa11.57□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 MORC1Q86VD1 984 aa11.57□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 PRKRIP1Q9H875 184 aaPredicted RBP11.57□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 CPSF1Q10570 1443 aaKnown RBP11.57□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 CD163L1Q9NR16 1453 aa11.57□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 LTBP4Q8N2S1 1624 aa11.57□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 MYOM1P52179 1685 aa11.56□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 PAK3O75914 559 aaPredicted RBP11.56□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 MST1RQ04912 1400 aa11.56□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 FMN2Q9NZ56 1722 aa11.56□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 TTC21BQ7Z4L5 1316 aa11.56□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 POLR3AO14802 1390 aaPredicted RBP11.55□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 FYB1O15117 783 aa11.55□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 XPCQ01831 940 aaPredicted RBP11.55□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 KRT28Q7Z3Y7 464 aa11.55□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 GGNBP2Q9H3C7 697 aa11.55□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 USP32Q8NFA0 1604 aa11.55□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 EDC4Q6P2E9 1401 aaKnown RBP11.54□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 BRINP3Q76B58 766 aa11.54□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 NME9Q86XW9 330 aa11.54□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 USP6P35125 1406 aa11.53□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 TOM1O60784 492 aa11.53□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 TNNT2P45379 298 aaPredicted RBP11.53□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 LMOD2Q6P5Q4 547 aa11.53□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 NPC1L1Q9UHC9 1359 aa11.53□□□□□ -0.56
NEDD8-MDP1-201ENST00000530579 UBAP1LF5GYI3 381 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms