RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 IGHDP01880 384 aa25.2■■□□□ 1.63
PCF11-203ENST00000530304 CGNL1Q0VF96 1302 aa25.2■■□□□ 1.62
PCF11-203ENST00000530304 SLC4A3P48751 1232 aa25.19■■□□□ 1.62
PCF11-203ENST00000530304 NEUROD2Q15784 382 aa25.19■■□□□ 1.62
PCF11-203ENST00000530304 RUNDC1Q96C34 613 aa25.19■■□□□ 1.62
PCF11-203ENST00000530304 CANXP27824 592 aaKnown RBP25.17■■□□□ 1.62
PCF11-203ENST00000530304 RRP7AQ9Y3A4 280 aaKnown RBP25.17■■□□□ 1.62
PCF11-203ENST00000530304 FRMPD1Q5SYB0 1578 aa25.17■■□□□ 1.62
PCF11-203ENST00000530304 RPGRIP1LQ68CZ1 1315 aa25.16■■□□□ 1.62
PCF11-203ENST00000530304 NINLQ9Y2I6 1382 aa25.16■■□□□ 1.62
PCF11-203ENST00000530304 PANK1Q8TE04 598 aa25.16■■□□□ 1.62
PCF11-203ENST00000530304 DAXXQ9UER7 740 aaPredicted RBP25.16■■□□□ 1.62
PCF11-203ENST00000530304 TCP11L2Q8N4U5 519 aa25.16■■□□□ 1.62
PCF11-203ENST00000530304 COG6Q9Y2V7 657 aa25.16■■□□□ 1.62
PCF11-203ENST00000530304 POGZQ7Z3K3 1410 aa25.15■■□□□ 1.62
PCF11-203ENST00000530304 CLUAP1Q96AJ1 413 aa25.15■■□□□ 1.62
PCF11-203ENST00000530304 MLH3Q9UHC1 1453 aa25.14■■□□□ 1.62
PCF11-203ENST00000530304 MTHFSP49914 203 aa25.14■■□□□ 1.62
PCF11-203ENST00000530304 NPM1P06748 294 aaKnown RBP eCLIP25.13■■□□□ 1.61
PCF11-203ENST00000530304 IQSEC2Q5JU85 1478 aa25.13■■□□□ 1.61
PCF11-203ENST00000530304 PHF23Q9BUL5 403 aaPredicted RBP25.13■■□□□ 1.61
PCF11-203ENST00000530304 CD109Q6YHK3 1445 aa25.12■■□□□ 1.61
PCF11-203ENST00000530304 FRAT1Q92837 279 aaPredicted RBP25.12■■□□□ 1.61
PCF11-203ENST00000530304 USP32Q8NFA0 1604 aa25.12■■□□□ 1.61
PCF11-203ENST00000530304 RARSP54136 660 aaKnown RBP25.11■■□□□ 1.61
PCF11-203ENST00000530304 WDR63Q8IWG1 891 aa25.1■■□□□ 1.61
PCF11-203ENST00000530304 HECW2Q9P2P5 1572 aa25.1■■□□□ 1.61
PCF11-203ENST00000530304 ABCC3O15438 1527 aa25.1■■□□□ 1.61
PCF11-203ENST00000530304 CFAP53Q96M91 514 aa25.09■■□□□ 1.61
PCF11-203ENST00000530304 CFAP74Q9C0B2 1584 aa25.09■■□□□ 1.61
PCF11-203ENST00000530304 NUTM2DQ5VT03 806 aaPredicted RBP25.09■■□□□ 1.61
PCF11-203ENST00000530304 EVC2Q86UK5 1308 aa25.08■■□□□ 1.61
PCF11-203ENST00000530304 NFKBIBQ15653 356 aa25.08■■□□□ 1.61
PCF11-203ENST00000530304 GLI2P10070 1586 aa25.07■■□□□ 1.6
PCF11-203ENST00000530304 PUS7Q96PZ0 661 aaKnown RBP25.07■■□□□ 1.6
PCF11-203ENST00000530304 CCDC27Q2M243 656 aa25.06■■□□□ 1.6
PCF11-203ENST00000530304 ANKRD36BQ8N2N9 1353 aa25.05■■□□□ 1.6
PCF11-203ENST00000530304 VGFO15240 615 aaPredicted RBP25.05■■□□□ 1.6
PCF11-203ENST00000530304 MAPK8IP3Q9UPT6 1336 aa25.04■■□□□ 1.6
PCF11-203ENST00000530304 SIGLEC1Q9BZZ2 1709 aa25.04■■□□□ 1.6
PCF11-203ENST00000530304 TULP4Q9NRJ4 1543 aa25.04■■□□□ 1.6
PCF11-203ENST00000530304 CAMSAP1Q5T5Y3 1602 aa25.03■■□□□ 1.6
PCF11-203ENST00000530304 VIRMAQ69YN4 1812 aaKnown RBP25.03■■□□□ 1.6
PCF11-203ENST00000530304 ARHGEF28Q8N1W1 1705 aaKnown RBP25.03■■□□□ 1.6
PCF11-203ENST00000530304 NSD2O96028 1365 aa25.02■■□□□ 1.6
PCF11-203ENST00000530304 RLBP1P12271 317 aa25.02■■□□□ 1.6
PCF11-203ENST00000530304 CABP2Q9NPB3 220 aa25.02■■□□□ 1.6
PCF11-203ENST00000530304 AAMPQ13685 434 aa25.01■■□□□ 1.59
PCF11-203ENST00000530304 BCL2L13Q9BXK5 485 aa25.01■■□□□ 1.59
PCF11-203ENST00000530304 TNNQ9UQP3 1299 aa25.01■■□□□ 1.59
PCF11-203ENST00000530304 NEXMIFQ5QGS0 1516 aa25.01■■□□□ 1.59
PCF11-203ENST00000530304 U2AF1L5P0DN76 240 aaPredicted RBP25■■□□□ 1.59
PCF11-203ENST00000530304 U2AF1Q01081 240 aaKnown RBP eCLIP25■■□□□ 1.59
PCF11-203ENST00000530304 PMFBP1Q8TBY8 1022 aa25■■□□□ 1.59
PCF11-203ENST00000530304 PIK3C2BO00750 1634 aa25■■□□□ 1.59
PCF11-203ENST00000530304 USP19O94966 1318 aa25■■□□□ 1.59
PCF11-203ENST00000530304 PCDHB15Q9Y5E8 787 aa24.99■■□□□ 1.59
PCF11-203ENST00000530304 NCBP3Q53F19 620 aaKnown RBP24.99■■□□□ 1.59
PCF11-203ENST00000530304 MYH16Q9H6N6 1097 aa24.99■■□□□ 1.59
PCF11-203ENST00000530304 RAPGEF3O95398 923 aa24.99■■□□□ 1.59
PCF11-203ENST00000530304 SEC24BO95487 1268 aa24.98■■□□□ 1.59
PCF11-203ENST00000530304 SAFB2Q14151 953 aaKnown RBP eCLIP24.98■■□□□ 1.59
PCF11-203ENST00000530304 GSE1Q14687 1217 aa24.96■■□□□ 1.59
PCF11-203ENST00000530304 IDI1Q13907 227 aa24.95■■□□□ 1.58
PCF11-203ENST00000530304 ADGRB2O60241 1585 aa24.92■■□□□ 1.58
PCF11-203ENST00000530304 A0A1W2PP64 1363 aa24.92■■□□□ 1.58
PCF11-203ENST00000530304 STK26Q9P289 416 aa24.92■■□□□ 1.58
PCF11-203ENST00000530304 ABCC11Q96J66 1382 aa24.91■■□□□ 1.58
PCF11-203ENST00000530304 SRPK2P78362 688 aaKnown RBP24.91■■□□□ 1.58
PCF11-203ENST00000530304 SENP3Q9H4L4 574 aaPredicted RBP24.9■■□□□ 1.58
PCF11-203ENST00000530304 ARHGAP31Q2M1Z3 1444 aa24.9■■□□□ 1.58
PCF11-203ENST00000530304 RWDD1Q9H446 243 aaPredicted RBP24.9■■□□□ 1.58
PCF11-203ENST00000530304 PDZRN3Q9UPQ7 1066 aa24.9■■□□□ 1.58
PCF11-203ENST00000530304 DIP2CQ9Y2E4 1556 aa24.89■■□□□ 1.57
PCF11-203ENST00000530304 NEO1Q92859 1461 aa24.89■■□□□ 1.57
PCF11-203ENST00000530304 MVPQ14764 893 aaKnown RBP24.89■■□□□ 1.57
PCF11-203ENST00000530304 OSCARQ8IYS5 282 aa24.89■■□□□ 1.57
PCF11-203ENST00000530304 IL27Q8NEV9 243 aa24.89■■□□□ 1.57
PCF11-203ENST00000530304 PLEKHF1Q96S99 279 aa24.89■■□□□ 1.57
PCF11-203ENST00000530304 GGNBP2Q9H3C7 697 aa24.89■■□□□ 1.57
PCF11-203ENST00000530304 ZFYVE9O95405 1425 aa24.88■■□□□ 1.57
PCF11-203ENST00000530304 FRAT2O75474 233 aaPredicted RBP24.88■■□□□ 1.57
PCF11-203ENST00000530304 U2SURPO15042 1029 aaKnown RBP24.88■■□□□ 1.57
PCF11-203ENST00000530304 ZKSCAN2Q63HK3 967 aa24.88■■□□□ 1.57
PCF11-203ENST00000530304 TSR2Q969E8 191 aaKnown RBP24.88■■□□□ 1.57
PCF11-203ENST00000530304 SLC52A1Q9NWF4 448 aa24.87■■□□□ 1.57
PCF11-203ENST00000530304 NLRP1Q9C000 1473 aa24.86■■□□□ 1.57
PCF11-203ENST00000530304 CT47B1P0C2W7 299 aaPredicted RBP24.86■■□□□ 1.57
PCF11-203ENST00000530304 ZMYM3Q14202 1370 aa24.86■■□□□ 1.57
PCF11-203ENST00000530304 TMPOP42166 694 aaKnown RBP24.85■■□□□ 1.57
PCF11-203ENST00000530304 DZIP1LQ8IYY4 767 aaKnown RBP24.85■■□□□ 1.57
PCF11-203ENST00000530304 FTSJ3Q8IY81 847 aaKnown RBP24.85■■□□□ 1.57
PCF11-203ENST00000530304 TRIM35Q9UPQ4 493 aa24.84■■□□□ 1.57
PCF11-203ENST00000530304 FYB1O15117 783 aa24.83■■□□□ 1.57
PCF11-203ENST00000530304 EXOSC9Q06265 439 aaKnown RBP24.83■■□□□ 1.57
PCF11-203ENST00000530304 BECN1Q14457 450 aa24.83■■□□□ 1.57
PCF11-203ENST00000530304 COL3A1P02461 1466 aaPredicted RBP24.83■■□□□ 1.56
PCF11-203ENST00000530304 MINK1Q8N4C8 1332 aaPredicted RBP24.82■■□□□ 1.56
PCF11-203ENST00000530304 SMC4Q9NTJ3 1288 aa24.82■■□□□ 1.56
PCF11-203ENST00000530304 TERF2IPQ9NYB0 399 aa24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms