RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 NHSL1Q5SYE7 1610 aa19.19■□□□□ 0.66
CPSF1-204ENST00000529288 NGLY1Q96IV0 654 aa19.19■□□□□ 0.66
CPSF1-204ENST00000529288 LRPPRCP42704 1394 aaKnown RBP19.19■□□□□ 0.66
CPSF1-204ENST00000529288 RAB3GAP2Q9H2M9 1393 aa19.19■□□□□ 0.66
CPSF1-204ENST00000529288 XPCQ01831 940 aaPredicted RBP19.18■□□□□ 0.66
CPSF1-204ENST00000529288 FOXO3O43524 673 aa19.17■□□□□ 0.66
CPSF1-204ENST00000529288 QTRT2Q9H974 415 aaKnown RBP19.17■□□□□ 0.66
CPSF1-204ENST00000529288 SOS2Q07890 1332 aaPredicted RBP19.17■□□□□ 0.66
CPSF1-204ENST00000529288 PLEKHH1Q9ULM0 1364 aa19.17■□□□□ 0.66
CPSF1-204ENST00000529288 CFAP70Q5T0N1 1121 aa19.16■□□□□ 0.66
CPSF1-204ENST00000529288 PRAG1Q86YV5 1406 aa19.16■□□□□ 0.66
CPSF1-204ENST00000529288 SAFB2Q14151 953 aaKnown RBP eCLIP19.14■□□□□ 0.65
CPSF1-204ENST00000529288 C14orf93Q9H972 538 aaKnown RBP19.14■□□□□ 0.65
CPSF1-204ENST00000529288 NPHP3Q7Z494 1330 aa19.14■□□□□ 0.65
CPSF1-204ENST00000529288 ABCC11Q96J66 1382 aa19.14■□□□□ 0.65
CPSF1-204ENST00000529288 PIK3C2GO75747 1445 aa19.14■□□□□ 0.65
CPSF1-204ENST00000529288 YTHDC2Q9H6S0 1430 aaKnown RBP19.13■□□□□ 0.65
CPSF1-204ENST00000529288 KDM2AQ9Y2K7 1162 aa19.12■□□□□ 0.65
CPSF1-204ENST00000529288 DHX57Q6P158 1386 aaKnown RBP19.11■□□□□ 0.65
CPSF1-204ENST00000529288 TECPR2O15040 1411 aa19.1■□□□□ 0.65
CPSF1-204ENST00000529288 RBM6P78332 1123 aaKnown RBP19.1■□□□□ 0.65
CPSF1-204ENST00000529288 UPF1Q92900 1129 aaKnown RBP eCLIP19.1■□□□□ 0.65
CPSF1-204ENST00000529288 USP21Q9UK80 565 aa19.1■□□□□ 0.65
CPSF1-204ENST00000529288 PLEKHG5O94827 1062 aa19.09■□□□□ 0.65
CPSF1-204ENST00000529288 PRAM1Q96QH2 718 aa19.09■□□□□ 0.65
CPSF1-204ENST00000529288 POGKQ9P215 609 aa19.09■□□□□ 0.65
CPSF1-204ENST00000529288 CDC42BPGQ6DT37 1551 aa19.09■□□□□ 0.65
CPSF1-204ENST00000529288 DCAF11Q8TEB1 546 aa19.07■□□□□ 0.64
CPSF1-204ENST00000529288 SIRT1Q96EB6 747 aa19.07■□□□□ 0.64
CPSF1-204ENST00000529288 IFT172Q9UG01 1749 aa19.07■□□□□ 0.64
CPSF1-204ENST00000529288 KRT28Q7Z3Y7 464 aa19.06■□□□□ 0.64
CPSF1-204ENST00000529288 TRAK1Q9UPV9 953 aa19.05■□□□□ 0.64
CPSF1-204ENST00000529288 TRPC5Q9UL62 973 aaPredicted RBP19.04■□□□□ 0.64
CPSF1-204ENST00000529288 LAMC1P11047 1609 aa19.03■□□□□ 0.64
CPSF1-204ENST00000529288 MYOM2P54296 1465 aa19.03■□□□□ 0.64
CPSF1-204ENST00000529288 HAP1P54257 671 aaPredicted RBP19.03■□□□□ 0.64
CPSF1-204ENST00000529288 LMOD2Q6P5Q4 547 aa19.03■□□□□ 0.64
CPSF1-204ENST00000529288 PHF8Q9UPP1 1060 aa19.03■□□□□ 0.64
CPSF1-204ENST00000529288 PXDNQ92626 1479 aa19.03■□□□□ 0.64
CPSF1-204ENST00000529288 FNBP4Q8N3X1 1017 aaPredicted RBP19.02■□□□□ 0.64
CPSF1-204ENST00000529288 HIRIP3Q9BW71 556 aaPredicted RBP19.02■□□□□ 0.64
CPSF1-204ENST00000529288 CDK12Q9NYV4 1490 aaPredicted RBP19.02■□□□□ 0.63
CPSF1-204ENST00000529288 NRXN1Q9ULB1 1477 aa19.02■□□□□ 0.63
CPSF1-204ENST00000529288 RGS12O14924 1447 aa19.01■□□□□ 0.63
CPSF1-204ENST00000529288 KNDC1Q76NI1 1749 aa19■□□□□ 0.63
CPSF1-204ENST00000529288 PSME1Q06323 249 aa19■□□□□ 0.63
CPSF1-204ENST00000529288 PMFBP1Q8TBY8 1022 aa19■□□□□ 0.63
CPSF1-204ENST00000529288 SPATA31A3Q5VYP0 1347 aa19■□□□□ 0.63
CPSF1-204ENST00000529288 MINK1Q8N4C8 1332 aaPredicted RBP19■□□□□ 0.63
CPSF1-204ENST00000529288 HRCP23327 699 aa18.97■□□□□ 0.63
CPSF1-204ENST00000529288 CABLES1Q8TDN4 633 aa18.97■□□□□ 0.63
CPSF1-204ENST00000529288 FMN2Q9NZ56 1722 aa18.97■□□□□ 0.63
CPSF1-204ENST00000529288 COL22A1Q8NFW1 1626 aaPredicted RBP18.96■□□□□ 0.63
CPSF1-204ENST00000529288 ATRNO75882 1429 aa18.94■□□□□ 0.62
CPSF1-204ENST00000529288 GJD4Q96KN9 370 aaPredicted RBP18.93■□□□□ 0.62
CPSF1-204ENST00000529288 KIF1AQ12756 1690 aa18.92■□□□□ 0.62
CPSF1-204ENST00000529288 TNS3Q68CZ2 1445 aa18.91■□□□□ 0.62
CPSF1-204ENST00000529288 BCL9LQ86UU0 1499 aa18.91■□□□□ 0.62
CPSF1-204ENST00000529288 DLC1Q96QB1 1528 aa18.91■□□□□ 0.62
CPSF1-204ENST00000529288 UNC5CLQ8IV45 518 aa18.91■□□□□ 0.62
CPSF1-204ENST00000529288 STAC3Q96MF2 364 aa18.91■□□□□ 0.62
CPSF1-204ENST00000529288 ATAD2Q6PL18 1390 aa18.91■□□□□ 0.62
CPSF1-204ENST00000529288 ADGRB1O14514 1584 aa18.9■□□□□ 0.62
CPSF1-204ENST00000529288 WASLO00401 505 aaPredicted RBP18.9■□□□□ 0.62
CPSF1-204ENST00000529288 CCDC9Q9Y3X0 531 aaKnown RBP18.9■□□□□ 0.62
CPSF1-204ENST00000529288 NGDNQ8NEJ9 315 aaKnown RBP18.89■□□□□ 0.61
CPSF1-204ENST00000529288 SBNO1A3KN83 1393 aa18.89■□□□□ 0.61
CPSF1-204ENST00000529288 PAK3O75914 559 aaPredicted RBP18.88■□□□□ 0.61
CPSF1-204ENST00000529288 PRR36Q9H6K5 1346 aa18.88■□□□□ 0.61
CPSF1-204ENST00000529288 GPRASP1Q5JY77 1395 aa18.88■□□□□ 0.61
CPSF1-204ENST00000529288 ANKARQ7Z5J8 1434 aa18.88■□□□□ 0.61
CPSF1-204ENST00000529288 ARHGEF10O15013 1369 aa18.87■□□□□ 0.61
CPSF1-204ENST00000529288 RGPD8O14715 1765 aaPredicted RBP18.86■□□□□ 0.61
CPSF1-204ENST00000529288 EIF3AQ14152 1382 aaKnown RBP18.86■□□□□ 0.61
CPSF1-204ENST00000529288 A0A0G2JS52 829 aa18.83■□□□□ 0.6
CPSF1-204ENST00000529288 FAM83GA6ND36 823 aa18.83■□□□□ 0.6
CPSF1-204ENST00000529288 MYT1Q01538 1121 aa18.83■□□□□ 0.6
CPSF1-204ENST00000529288 NUDT16Q96DE0 195 aaKnown RBP18.83■□□□□ 0.6
CPSF1-204ENST00000529288 SLIT2O94813 1529 aa18.83■□□□□ 0.6
CPSF1-204ENST00000529288 CDK19Q9BWU1 502 aa18.82■□□□□ 0.6
CPSF1-204ENST00000529288 RALGAPBQ86X10 1494 aa18.82■□□□□ 0.6
CPSF1-204ENST00000529288 USP32Q8NFA0 1604 aa18.82■□□□□ 0.6
CPSF1-204ENST00000529288 ADGRB2O60241 1585 aa18.81■□□□□ 0.6
CPSF1-204ENST00000529288 MARF1Q9Y4F3 1742 aaKnown RBP18.81■□□□□ 0.6
CPSF1-204ENST00000529288 VPS72Q15906 364 aa18.81■□□□□ 0.6
CPSF1-204ENST00000529288 NBPF1Q3BBV0 1214 aa18.81■□□□□ 0.6
CPSF1-204ENST00000529288 TULP4Q9NRJ4 1543 aa18.8■□□□□ 0.6
CPSF1-204ENST00000529288 SEPT12Q8IYM1 358 aa18.8■□□□□ 0.6
CPSF1-204ENST00000529288 BTG4Q9NY30 223 aa18.79■□□□□ 0.6
CPSF1-204ENST00000529288 NUTM2GQ5VZR2 741 aa18.78■□□□□ 0.6
CPSF1-204ENST00000529288 NEUROD1Q13562 356 aa18.76■□□□□ 0.59
CPSF1-204ENST00000529288 CCDC125Q86Z20 511 aa18.76■□□□□ 0.59
CPSF1-204ENST00000529288 GLI3P10071 1580 aa18.76■□□□□ 0.59
CPSF1-204ENST00000529288 SRPK2P78362 688 aaKnown RBP18.75■□□□□ 0.59
CPSF1-204ENST00000529288 SF3B2Q13435 895 aaKnown RBP18.74■□□□□ 0.59
CPSF1-204ENST00000529288 FAM98CQ17RN3 349 aaKnown RBP18.74■□□□□ 0.59
CPSF1-204ENST00000529288 SIN3AQ96ST3 1273 aa18.74■□□□□ 0.59
CPSF1-204ENST00000529288 PRDM11Q9NQV5 511 aa18.74■□□□□ 0.59
CPSF1-204ENST00000529288 ZRANB1Q9UGI0 708 aa18.74■□□□□ 0.59
CPSF1-204ENST00000529288 ACEP12821 1306 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms