RNA–Protein interactions for RNA: ENST00000529205.1

HIF3A-212, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 549 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-212ENST00000529205 CCDC125Q86Z20 511 aa20.36■□□□□ 0.85
HIF3A-212ENST00000529205 LRPPRCP42704 1394 aaKnown RBP20.34■□□□□ 0.85
HIF3A-212ENST00000529205 SLC4A1APQ9BWU0 796 aaKnown RBP20.34■□□□□ 0.85
HIF3A-212ENST00000529205 PRAG1Q86YV5 1406 aa20.34■□□□□ 0.85
HIF3A-212ENST00000529205 NAIPQ13075 1403 aa20.33■□□□□ 0.84
HIF3A-212ENST00000529205 ATRNO75882 1429 aa20.32■□□□□ 0.84
HIF3A-212ENST00000529205 COL22A1Q8NFW1 1626 aaPredicted RBP20.31■□□□□ 0.84
HIF3A-212ENST00000529205 FOXO3O43524 673 aa20.3■□□□□ 0.84
HIF3A-212ENST00000529205 GJD4Q96KN9 370 aaPredicted RBP20.29■□□□□ 0.84
HIF3A-212ENST00000529205 CDC42BPGQ6DT37 1551 aa20.27■□□□□ 0.84
HIF3A-212ENST00000529205 MYOM2P54296 1465 aa20.27■□□□□ 0.84
HIF3A-212ENST00000529205 RRBP1Q9P2E9 1410 aaKnown RBP20.27■□□□□ 0.83
HIF3A-212ENST00000529205 XPCQ01831 940 aaPredicted RBP20.26■□□□□ 0.83
HIF3A-212ENST00000529205 BCL9LQ86UU0 1499 aa20.25■□□□□ 0.83
HIF3A-212ENST00000529205 NUTM2FA1L443 756 aa20.25■□□□□ 0.83
HIF3A-212ENST00000529205 STK26Q9P289 416 aa20.25■□□□□ 0.83
HIF3A-212ENST00000529205 PXDNQ92626 1479 aa20.24■□□□□ 0.83
HIF3A-212ENST00000529205 PPLO60437 1756 aa20.23■□□□□ 0.83
HIF3A-212ENST00000529205 HAP1P54257 671 aaPredicted RBP20.22■□□□□ 0.83
HIF3A-212ENST00000529205 RGL3Q3MIN7 710 aa20.22■□□□□ 0.83
HIF3A-212ENST00000529205 WAPLQ7Z5K2 1190 aa20.22■□□□□ 0.83
HIF3A-212ENST00000529205 UNC5CLQ8IV45 518 aa20.22■□□□□ 0.83
HIF3A-212ENST00000529205 SF3B2Q13435 895 aaKnown RBP20.21■□□□□ 0.83
HIF3A-212ENST00000529205 ADGRF5Q8IZF2 1346 aa20.21■□□□□ 0.83
HIF3A-212ENST00000529205 ANKRD30BQ9BXX2 1392 aa20.21■□□□□ 0.83
HIF3A-212ENST00000529205 CCDC144AA2RUR9 1427 aa20.2■□□□□ 0.82
HIF3A-212ENST00000529205 MARF1Q9Y4F3 1742 aaKnown RBP20.19■□□□□ 0.82
HIF3A-212ENST00000529205 SPATA31A3Q5VYP0 1347 aa20.19■□□□□ 0.82
HIF3A-212ENST00000529205 ABCC11Q96J66 1382 aa20.19■□□□□ 0.82
HIF3A-212ENST00000529205 TECPR2O15040 1411 aa20.19■□□□□ 0.82
HIF3A-212ENST00000529205 PSME1Q06323 249 aa20.18■□□□□ 0.82
HIF3A-212ENST00000529205 KRT28Q7Z3Y7 464 aa20.18■□□□□ 0.82
HIF3A-212ENST00000529205 BLMP54132 1417 aaPredicted RBP20.17■□□□□ 0.82
HIF3A-212ENST00000529205 TMEM132EQ6IEE7 984 aa20.16■□□□□ 0.82
HIF3A-212ENST00000529205 RALGAPBQ86X10 1494 aa20.15■□□□□ 0.82
HIF3A-212ENST00000529205 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.15■□□□□ 0.82
HIF3A-212ENST00000529205 SLIT2O94813 1529 aa20.14■□□□□ 0.81
HIF3A-212ENST00000529205 SIRT1Q96EB6 747 aa20.14■□□□□ 0.81
HIF3A-212ENST00000529205 CCDC9Q9Y3X0 531 aaKnown RBP20.14■□□□□ 0.81
HIF3A-212ENST00000529205 KIF1AQ12756 1690 aa20.13■□□□□ 0.81
HIF3A-212ENST00000529205 PLEKHH1Q9ULM0 1364 aa20.12■□□□□ 0.81
HIF3A-212ENST00000529205 SEPT12Q8IYM1 358 aa20.12■□□□□ 0.81
HIF3A-212ENST00000529205 PHF8Q9UPP1 1060 aa20.12■□□□□ 0.81
HIF3A-212ENST00000529205 VPS72Q15906 364 aa20.11■□□□□ 0.81
HIF3A-212ENST00000529205 LMOD2Q6P5Q4 547 aa20.11■□□□□ 0.81
HIF3A-212ENST00000529205 YTHDC2Q9H6S0 1430 aaKnown RBP20.1■□□□□ 0.81
HIF3A-212ENST00000529205 MPHOSPH9Q99550 1183 aa20.1■□□□□ 0.81
HIF3A-212ENST00000529205 KNDC1Q76NI1 1749 aa20.1■□□□□ 0.81
HIF3A-212ENST00000529205 FMN2Q9NZ56 1722 aa20.1■□□□□ 0.81
HIF3A-212ENST00000529205 SPATA31E1Q6ZUB1 1445 aa20.1■□□□□ 0.81
HIF3A-212ENST00000529205 USP32Q8NFA0 1604 aa20.09■□□□□ 0.81
HIF3A-212ENST00000529205 GLI3P10071 1580 aa20.09■□□□□ 0.81
HIF3A-212ENST00000529205 PLEKHG5O94827 1062 aa20.09■□□□□ 0.81
HIF3A-212ENST00000529205 PIK3C2GO75747 1445 aa20.09■□□□□ 0.81
HIF3A-212ENST00000529205 TNS3Q68CZ2 1445 aa20.09■□□□□ 0.81
HIF3A-212ENST00000529205 DHX57Q6P158 1386 aaKnown RBP20.08■□□□□ 0.81
HIF3A-212ENST00000529205 DEFB132Q7Z7B7 95 aa20.08■□□□□ 0.81
HIF3A-212ENST00000529205 A0A0G2JS52 829 aa20.07■□□□□ 0.8
HIF3A-212ENST00000529205 MYT1Q01538 1121 aa20.07■□□□□ 0.8
HIF3A-212ENST00000529205 KRT27Q7Z3Y8 459 aa20.07■□□□□ 0.8
HIF3A-212ENST00000529205 CABLES1Q8TDN4 633 aa20.07■□□□□ 0.8
HIF3A-212ENST00000529205 ARHGEF10O15013 1369 aa20.07■□□□□ 0.8
HIF3A-212ENST00000529205 ACIN1Q9UKV3 1341 aaKnown RBP20.06■□□□□ 0.8
HIF3A-212ENST00000529205 ONECUT3O60422 494 aaPredicted RBP20.06■□□□□ 0.8
HIF3A-212ENST00000529205 C14orf93Q9H972 538 aaKnown RBP20.06■□□□□ 0.8
HIF3A-212ENST00000529205 SBNO1A3KN83 1393 aa20.06■□□□□ 0.8
HIF3A-212ENST00000529205 IFT172Q9UG01 1749 aa20.05■□□□□ 0.8
HIF3A-212ENST00000529205 BAG6P46379 1132 aa20.03■□□□□ 0.8
HIF3A-212ENST00000529205 POGKQ9P215 609 aa20.03■□□□□ 0.8
HIF3A-212ENST00000529205 SAFB2Q14151 953 aaKnown RBP eCLIP20.02■□□□□ 0.8
HIF3A-212ENST00000529205 PRAM1Q96QH2 718 aa20.02■□□□□ 0.8
HIF3A-212ENST00000529205 NRXN1Q9ULB1 1477 aa20.01■□□□□ 0.79
HIF3A-212ENST00000529205 CFAP70Q5T0N1 1121 aa20.01■□□□□ 0.79
HIF3A-212ENST00000529205 NWD2Q9ULI1 1742 aa20.01■□□□□ 0.79
HIF3A-212ENST00000529205 EP400Q96L91 3159 aa20■□□□□ 0.79
HIF3A-212ENST00000529205 BRWD3Q6RI45 1802 aa20■□□□□ 0.79
HIF3A-212ENST00000529205 FAM83GA6ND36 823 aa20■□□□□ 0.79
HIF3A-212ENST00000529205 PMFBP1Q8TBY8 1022 aa20■□□□□ 0.79
HIF3A-212ENST00000529205 GPRASP1Q5JY77 1395 aa19.98■□□□□ 0.79
HIF3A-212ENST00000529205 PLCH1Q4KWH8 1693 aa19.98■□□□□ 0.79
HIF3A-212ENST00000529205 ANKARQ7Z5J8 1434 aa19.98■□□□□ 0.79
HIF3A-212ENST00000529205 SRCAPQ6ZRS2 3230 aa19.98■□□□□ 0.79
HIF3A-212ENST00000529205 FAM98CQ17RN3 349 aaKnown RBP19.97■□□□□ 0.79
HIF3A-212ENST00000529205 BTG4Q9NY30 223 aa19.97■□□□□ 0.79
HIF3A-212ENST00000529205 RGPD8O14715 1765 aaPredicted RBP19.96■□□□□ 0.79
HIF3A-212ENST00000529205 EIF3AQ14152 1382 aaKnown RBP19.95■□□□□ 0.79
HIF3A-212ENST00000529205 PSDA5PKW4 1024 aaPredicted RBP19.93■□□□□ 0.78
HIF3A-212ENST00000529205 DLC1Q96QB1 1528 aa19.92■□□□□ 0.78
HIF3A-212ENST00000529205 LRP5O75197 1615 aa19.92■□□□□ 0.78
HIF3A-212ENST00000529205 ABCA3Q99758 1704 aa19.91■□□□□ 0.78
HIF3A-212ENST00000529205 TRAK1Q9UPV9 953 aa19.91■□□□□ 0.78
HIF3A-212ENST00000529205 PAK3O75914 559 aaPredicted RBP19.9■□□□□ 0.78
HIF3A-212ENST00000529205 HRCP23327 699 aa19.9■□□□□ 0.78
HIF3A-212ENST00000529205 EN1Q05925 392 aaPredicted RBP19.9■□□□□ 0.78
HIF3A-212ENST00000529205 NGDNQ8NEJ9 315 aaKnown RBP19.9■□□□□ 0.78
HIF3A-212ENST00000529205 HIRIP3Q9BW71 556 aaPredicted RBP19.9■□□□□ 0.78
HIF3A-212ENST00000529205 COL14A1Q05707 1796 aaKnown RBP19.88■□□□□ 0.77
HIF3A-212ENST00000529205 SPATA31A5Q5VU36 1347 aa19.88■□□□□ 0.77
HIF3A-212ENST00000529205 SPATA31A7Q8IWB4 1347 aa19.88■□□□□ 0.77
HIF3A-212ENST00000529205 MINK1Q8N4C8 1332 aaPredicted RBP19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms