RNA–Protein interactions for RNA: ENST00000528865.5

CSTF3-208, Transcript of cleavage stimulation factor subunit 3, human

TSL 5

Gene CSTF3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSTF3-208	ENST00000528865	NSD3	Q9BZ95	1437 aa		10.88	□□□□□ -0.67
CSTF3-208	ENST00000528865	CFAP74	Q9C0B2	1584 aa		10.88	□□□□□ -0.67
CSTF3-208	ENST00000528865	DMRT2	Q9Y5R5	561 aa		10.88	□□□□□ -0.67
CSTF3-208	ENST00000528865	ZFYVE9	O95405	1425 aa		10.87	□□□□□ -0.67
CSTF3-208	ENST00000528865	ARHGAP31	Q2M1Z3	1444 aa		10.87	□□□□□ -0.67
CSTF3-208	ENST00000528865	BCAR3	O75815	825 aa		10.87	□□□□□ -0.67
CSTF3-208	ENST00000528865	RTL5	Q5HYW3	569 aa	Predicted RBP	10.87	□□□□□ -0.67
CSTF3-208	ENST00000528865	SKAP1	Q86WV1	359 aa		10.87	□□□□□ -0.67
CSTF3-208	ENST00000528865	SLC12A5	Q9H2X9	1139 aa		10.87	□□□□□ -0.67
CSTF3-208	ENST00000528865	ZC3H13	Q5T200	1668 aa	Known RBP	10.87	□□□□□ -0.67
CSTF3-208	ENST00000528865	ABCC3	O15438	1527 aa		10.87	□□□□□ -0.67
CSTF3-208	ENST00000528865	NSD2	O96028	1365 aa		10.87	□□□□□ -0.67
CSTF3-208	ENST00000528865	TRAK1	Q9UPV9	953 aa		10.86	□□□□□ -0.67
CSTF3-208	ENST00000528865	IQSEC2	Q5JU85	1478 aa		10.86	□□□□□ -0.67
CSTF3-208	ENST00000528865	HECW2	Q9P2P5	1572 aa		10.86	□□□□□ -0.67
CSTF3-208	ENST00000528865	VGF	O15240	615 aa	Predicted RBP	10.85	□□□□□ -0.67
CSTF3-208	ENST00000528865	NEO1	Q92859	1461 aa		10.85	□□□□□ -0.67
CSTF3-208	ENST00000528865	SHPRH	Q149N8	1683 aa		10.85	□□□□□ -0.67
CSTF3-208	ENST00000528865	EVC2	Q86UK5	1308 aa		10.84	□□□□□ -0.67
CSTF3-208	ENST00000528865	CHGA	P10645	457 aa	Known RBP	10.84	□□□□□ -0.67
CSTF3-208	ENST00000528865	PIK3C2B	O00750	1634 aa		10.84	□□□□□ -0.67
CSTF3-208	ENST00000528865	QRICH2	Q9H0J4	1663 aa		10.83	□□□□□ -0.68
CSTF3-208	ENST00000528865	ANKRD36B	Q8N2N9	1353 aa		10.83	□□□□□ -0.68
CSTF3-208	ENST00000528865	IGHD	P01880	384 aa		10.83	□□□□□ -0.68
CSTF3-208	ENST00000528865	RARS	P54136	660 aa	Known RBP	10.83	□□□□□ -0.68
CSTF3-208	ENST00000528865	TMEM132E	Q6IEE7	984 aa		10.83	□□□□□ -0.68
CSTF3-208	ENST00000528865	GGT6	Q6P531	493 aa		10.83	□□□□□ -0.68
CSTF3-208	ENST00000528865	TCP11L2	Q8N4U5	519 aa		10.83	□□□□□ -0.68
CSTF3-208	ENST00000528865	CFAP53	Q96M91	514 aa		10.83	□□□□□ -0.68
CSTF3-208	ENST00000528865	ZMYM3	Q14202	1370 aa		10.82	□□□□□ -0.68
CSTF3-208	ENST00000528865	MTHFS	P49914	203 aa		10.82	□□□□□ -0.68
CSTF3-208	ENST00000528865	OSCAR	Q8IYS5	282 aa		10.82	□□□□□ -0.68
CSTF3-208	ENST00000528865	CLUAP1	Q96AJ1	413 aa		10.82	□□□□□ -0.68
CSTF3-208	ENST00000528865	NEXMIF	Q5QGS0	1516 aa		10.82	□□□□□ -0.68
CSTF3-208	ENST00000528865	CT47B1	P0C2W7	299 aa	Predicted RBP	10.81	□□□□□ -0.68
CSTF3-208	ENST00000528865	SLC52A1	Q9NWF4	448 aa		10.81	□□□□□ -0.68
CSTF3-208	ENST00000528865	MAPK8IP3	Q9UPT6	1336 aa		10.81	□□□□□ -0.68
CSTF3-208	ENST00000528865	CAMSAP1	Q5T5Y3	1602 aa		10.8	□□□□□ -0.68
CSTF3-208	ENST00000528865	TULP4	Q9NRJ4	1543 aa		10.8	□□□□□ -0.68
CSTF3-208	ENST00000528865	NEFM	P07197	916 aa		10.8	□□□□□ -0.68
CSTF3-208	ENST00000528865	PMFBP1	Q8TBY8	1022 aa		10.8	□□□□□ -0.68
CSTF3-208	ENST00000528865	GLI2	P10070	1586 aa		10.79	□□□□□ -0.68
CSTF3-208	ENST00000528865	IDI1	Q13907	227 aa		10.79	□□□□□ -0.68
CSTF3-208	ENST00000528865	MYH16	Q9H6N6	1097 aa		10.79	□□□□□ -0.68
CSTF3-208	ENST00000528865	LAS1L	Q9Y4W2	734 aa	Known RBP	10.79	□□□□□ -0.68
CSTF3-208	ENST00000528865	MED14	O60244	1454 aa		10.79	□□□□□ -0.68
CSTF3-208	ENST00000528865	USP19	O94966	1318 aa		10.79	□□□□□ -0.68
CSTF3-208	ENST00000528865	SIGLEC1	Q9BZZ2	1709 aa		10.78	□□□□□ -0.68
CSTF3-208	ENST00000528865	RGS3	P49796	1198 aa		10.78	□□□□□ -0.68
CSTF3-208	ENST00000528865	PANK1	Q8TE04	598 aa		10.78	□□□□□ -0.68
CSTF3-208	ENST00000528865	COG6	Q9Y2V7	657 aa		10.78	□□□□□ -0.68
CSTF3-208	ENST00000528865	ARHGEF28	Q8N1W1	1705 aa	Known RBP	10.78	□□□□□ -0.68
CSTF3-208	ENST00000528865	ABCC11	Q96J66	1382 aa		10.77	□□□□□ -0.68
CSTF3-208	ENST00000528865	ADGRB2	O60241	1585 aa		10.77	□□□□□ -0.68
CSTF3-208	ENST00000528865	DIP2C	Q9Y2E4	1556 aa		10.77	□□□□□ -0.68
CSTF3-208	ENST00000528865	PLEKHF1	Q96S99	279 aa		10.77	□□□□□ -0.69
CSTF3-208	ENST00000528865	RRP7A	Q9Y3A4	280 aa	Known RBP	10.76	□□□□□ -0.69
CSTF3-208	ENST00000528865	PCDHB15	Q9Y5E8	787 aa		10.76	□□□□□ -0.69
CSTF3-208	ENST00000528865	IL16	Q14005	1332 aa		10.76	□□□□□ -0.69
CSTF3-208	ENST00000528865	RAPGEF3	O95398	923 aa		10.75	□□□□□ -0.69
CSTF3-208	ENST00000528865	RLBP1	P12271	317 aa		10.75	□□□□□ -0.69
CSTF3-208	ENST00000528865	CANX	P27824	592 aa	Known RBP	10.75	□□□□□ -0.69
CSTF3-208	ENST00000528865	TNNT2	P45379	298 aa	Predicted RBP	10.75	□□□□□ -0.69
CSTF3-208	ENST00000528865	NFKBIB	Q15653	356 aa		10.75	□□□□□ -0.69
CSTF3-208	ENST00000528865	CABP2	Q9NPB3	220 aa		10.75	□□□□□ -0.69
CSTF3-208	ENST00000528865	CFAP65	Q6ZU64	1925 aa	Known RBP	10.75	□□□□□ -0.69
CSTF3-208	ENST00000528865	ATAD2	Q6PL18	1390 aa		10.75	□□□□□ -0.69
CSTF3-208	ENST00000528865	COL3A1	P02461	1466 aa	Predicted RBP	10.74	□□□□□ -0.69
CSTF3-208	ENST00000528865	U2AF1L5	P0DN76	240 aa	Predicted RBP	10.74	□□□□□ -0.69
CSTF3-208	ENST00000528865	U2AF1	Q01081	240 aa	Known RBP eCLIP	10.74	□□□□□ -0.69
CSTF3-208	ENST00000528865	ZKSCAN2	Q63HK3	967 aa		10.74	□□□□□ -0.69
CSTF3-208	ENST00000528865	RWDD1	Q9H446	243 aa	Predicted RBP	10.74	□□□□□ -0.69
CSTF3-208	ENST00000528865	DAXX	Q9UER7	740 aa	Predicted RBP	10.74	□□□□□ -0.69
CSTF3-208	ENST00000528865	PNPLA6	Q8IY17	1366 aa		10.74	□□□□□ -0.69
CSTF3-208	ENST00000528865	FYB1	O15117	783 aa		10.73	□□□□□ -0.69
CSTF3-208	ENST00000528865	TMPO	P42166	694 aa	Known RBP	10.73	□□□□□ -0.69
CSTF3-208	ENST00000528865	SLC4A3	P48751	1232 aa		10.73	□□□□□ -0.69
CSTF3-208	ENST00000528865	MVP	Q14764	893 aa	Known RBP	10.73	□□□□□ -0.69
CSTF3-208	ENST00000528865	NEUROD2	Q15784	382 aa		10.73	□□□□□ -0.69
CSTF3-208	ENST00000528865	TRIM35	Q9UPQ4	493 aa		10.73	□□□□□ -0.69
CSTF3-208	ENST00000528865		A0A1W2PP64	1363 aa		10.73	□□□□□ -0.69
CSTF3-208	ENST00000528865	PTPRM	P28827	1452 aa		10.73	□□□□□ -0.69
CSTF3-208	ENST00000528865	NLRP1	Q9C000	1473 aa		10.73	□□□□□ -0.69
CSTF3-208	ENST00000528865	FRAT1	Q92837	279 aa	Predicted RBP	10.72	□□□□□ -0.69
CSTF3-208	ENST00000528865	PNN	Q9H307	717 aa	Known RBP	10.72	□□□□□ -0.69
CSTF3-208	ENST00000528865	TERF2IP	Q9NYB0	399 aa		10.72	□□□□□ -0.69
CSTF3-208	ENST00000528865	PPP6R1	Q9UPN7	881 aa		10.72	□□□□□ -0.69
CSTF3-208	ENST00000528865	PDZRN3	Q9UPQ7	1066 aa		10.72	□□□□□ -0.69
CSTF3-208	ENST00000528865	TNN	Q9UQP3	1299 aa		10.72	□□□□□ -0.69
CSTF3-208	ENST00000528865	CD163L1	Q9NR16	1453 aa		10.72	□□□□□ -0.69
CSTF3-208	ENST00000528865	TMEM131L	A2VDJ0	1609 aa		10.72	□□□□□ -0.69
CSTF3-208	ENST00000528865	CLTC	Q00610	1675 aa	Known RBP	10.72	□□□□□ -0.69
CSTF3-208	ENST00000528865	RICTOR	Q6R327	1708 aa		10.72	□□□□□ -0.69
CSTF3-208	ENST00000528865	HDAC1	Q13547	482 aa	Predicted RBP	10.71	□□□□□ -0.69
CSTF3-208	ENST00000528865	YTHDC2	Q9H6S0	1430 aa	Known RBP	10.71	□□□□□ -0.69
CSTF3-208	ENST00000528865	VIRMA	Q69YN4	1812 aa	Known RBP	10.7	□□□□□ -0.7
CSTF3-208	ENST00000528865	SEC24B	O95487	1268 aa		10.7	□□□□□ -0.7
CSTF3-208	ENST00000528865	GSE1	Q14687	1217 aa		10.7	□□□□□ -0.7
CSTF3-208	ENST00000528865	NUTM2D	Q5VT03	806 aa	Predicted RBP	10.7	□□□□□ -0.7
CSTF3-208	ENST00000528865	DZIP1L	Q8IYY4	767 aa	Known RBP	10.7	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 76 ms