RNA–Protein interactions for RNA: ENST00000527680.1

TRAPPC4-208, Transcript of trafficking protein particle complex 4, human

TSL 2

Gene TRAPPC4, Length 569 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC4-208	ENST00000527680	ADAMTS2	O95450	1211 aa		33.13	■■■□□ 2.89
TRAPPC4-208	ENST00000527680	NGLY1	Q96IV0	654 aa		33.12	■■■□□ 2.89
TRAPPC4-208	ENST00000527680	SOS2	Q07890	1332 aa	Predicted RBP	33.11	■■■□□ 2.89
TRAPPC4-208	ENST00000527680	NUTM2F	A1L443	756 aa		33.1	■■■□□ 2.89
TRAPPC4-208	ENST00000527680	QTRT2	Q9H974	415 aa	Known RBP	33.1	■■■□□ 2.89
TRAPPC4-208	ENST00000527680	LRPPRC	P42704	1394 aa	Known RBP	33.08	■■■□□ 2.89
TRAPPC4-208	ENST00000527680	ABCC11	Q96J66	1382 aa		33.05	■■■□□ 2.88
TRAPPC4-208	ENST00000527680	IFT172	Q9UG01	1749 aa		33.05	■■■□□ 2.88
TRAPPC4-208	ENST00000527680	NPHP3	Q7Z494	1330 aa		33.04	■■■□□ 2.88
TRAPPC4-208	ENST00000527680	FOXO3	O43524	673 aa		33.04	■■■□□ 2.88
TRAPPC4-208	ENST00000527680	PIK3C2G	O75747	1445 aa		33.02	■■■□□ 2.88
TRAPPC4-208	ENST00000527680	XPC	Q01831	940 aa	Predicted RBP	33.01	■■■□□ 2.87
TRAPPC4-208	ENST00000527680	C14orf93	Q9H972	538 aa	Known RBP	33.01	■■■□□ 2.87
TRAPPC4-208	ENST00000527680	LAMC1	P11047	1609 aa		33.01	■■■□□ 2.87
TRAPPC4-208	ENST00000527680	RAB3GAP2	Q9H2M9	1393 aa		33	■■■□□ 2.87
TRAPPC4-208	ENST00000527680	RBM6	P78332	1123 aa	Known RBP	33	■■■□□ 2.87
TRAPPC4-208	ENST00000527680	UPF1	Q92900	1129 aa	Known RBP eCLIP	33	■■■□□ 2.87
TRAPPC4-208	ENST00000527680	TECPR2	O15040	1411 aa		33	■■■□□ 2.87
TRAPPC4-208	ENST00000527680	CDC42BPG	Q6DT37	1551 aa		33	■■■□□ 2.87
TRAPPC4-208	ENST00000527680	PLEKHH1	Q9ULM0	1364 aa		32.99	■■■□□ 2.87
TRAPPC4-208	ENST00000527680	CFAP70	Q5T0N1	1121 aa		32.99	■■■□□ 2.87
TRAPPC4-208	ENST00000527680	YTHDC2	Q9H6S0	1430 aa	Known RBP	32.99	■■■□□ 2.87
TRAPPC4-208	ENST00000527680	USP21	Q9UK80	565 aa		32.96	■■■□□ 2.87
TRAPPC4-208	ENST00000527680	DHX57	Q6P158	1386 aa	Known RBP	32.96	■■■□□ 2.87
TRAPPC4-208	ENST00000527680	CDK12	Q9NYV4	1490 aa	Predicted RBP	32.94	■■■□□ 2.86
TRAPPC4-208	ENST00000527680	SIRT1	Q96EB6	747 aa		32.94	■■■□□ 2.86
TRAPPC4-208	ENST00000527680	SAFB2	Q14151	953 aa	Known RBP eCLIP	32.91	■■■□□ 2.86
TRAPPC4-208	ENST00000527680	KNDC1	Q76NI1	1749 aa		32.91	■■■□□ 2.86
TRAPPC4-208	ENST00000527680	TRPC5	Q9UL62	973 aa	Predicted RBP	32.89	■■■□□ 2.86
TRAPPC4-208	ENST00000527680	POGK	Q9P215	609 aa		32.88	■■■□□ 2.85
TRAPPC4-208	ENST00000527680	KDM2A	Q9Y2K7	1162 aa		32.88	■■■□□ 2.85
TRAPPC4-208	ENST00000527680	PXDN	Q92626	1479 aa		32.87	■■■□□ 2.85
TRAPPC4-208	ENST00000527680	FNBP4	Q8N3X1	1017 aa	Predicted RBP	32.87	■■■□□ 2.85
TRAPPC4-208	ENST00000527680	PRAM1	Q96QH2	718 aa		32.87	■■■□□ 2.85
TRAPPC4-208	ENST00000527680	KRT28	Q7Z3Y7	464 aa		32.85	■■■□□ 2.85
TRAPPC4-208	ENST00000527680	MYOM2	P54296	1465 aa		32.85	■■■□□ 2.85
TRAPPC4-208	ENST00000527680	NRXN1	Q9ULB1	1477 aa		32.84	■■■□□ 2.85
TRAPPC4-208	ENST00000527680	COL22A1	Q8NFW1	1626 aa	Predicted RBP	32.83	■■■□□ 2.85
TRAPPC4-208	ENST00000527680	RGS12	O14924	1447 aa		32.83	■■■□□ 2.85
TRAPPC4-208	ENST00000527680	DCAF11	Q8TEB1	546 aa		32.82	■■■□□ 2.84
TRAPPC4-208	ENST00000527680	PHF8	Q9UPP1	1060 aa		32.82	■■■□□ 2.84
TRAPPC4-208	ENST00000527680	FMN2	Q9NZ56	1722 aa		32.82	■■■□□ 2.84
TRAPPC4-208	ENST00000527680	PSME1	Q06323	249 aa		32.8	■■■□□ 2.84
TRAPPC4-208	ENST00000527680	SPATA31A3	Q5VYP0	1347 aa		32.79	■■■□□ 2.84
TRAPPC4-208	ENST00000527680	TRAK1	Q9UPV9	953 aa		32.79	■■■□□ 2.84
TRAPPC4-208	ENST00000527680	PLEKHG5	O94827	1062 aa		32.77	■■■□□ 2.84
TRAPPC4-208	ENST00000527680	HAP1	P54257	671 aa	Predicted RBP	32.77	■■■□□ 2.84
TRAPPC4-208	ENST00000527680	RGPD8	O14715	1765 aa	Predicted RBP	32.75	■■■□□ 2.83
TRAPPC4-208	ENST00000527680	HRC	P23327	699 aa		32.75	■■■□□ 2.83
TRAPPC4-208	ENST00000527680	LMOD2	Q6P5Q4	547 aa		32.75	■■■□□ 2.83
TRAPPC4-208	ENST00000527680	KIF1A	Q12756	1690 aa		32.75	■■■□□ 2.83
TRAPPC4-208	ENST00000527680	PMFBP1	Q8TBY8	1022 aa		32.72	■■■□□ 2.83
TRAPPC4-208	ENST00000527680	HIRIP3	Q9BW71	556 aa	Predicted RBP	32.72	■■■□□ 2.83
TRAPPC4-208	ENST00000527680	ATRN	O75882	1429 aa		32.71	■■■□□ 2.83
TRAPPC4-208	ENST00000527680	STAC3	Q96MF2	364 aa		32.7	■■■□□ 2.83
TRAPPC4-208	ENST00000527680	BCL9L	Q86UU0	1499 aa		32.69	■■■□□ 2.82
TRAPPC4-208	ENST00000527680	MARF1	Q9Y4F3	1742 aa	Known RBP	32.69	■■■□□ 2.82
TRAPPC4-208	ENST00000527680	MINK1	Q8N4C8	1332 aa	Predicted RBP	32.69	■■■□□ 2.82
TRAPPC4-208	ENST00000527680	GJD4	Q96KN9	370 aa	Predicted RBP	32.68	■■■□□ 2.82
TRAPPC4-208	ENST00000527680	ATAD2	Q6PL18	1390 aa		32.68	■■■□□ 2.82
TRAPPC4-208	ENST00000527680	DLC1	Q96QB1	1528 aa		32.67	■■■□□ 2.82
TRAPPC4-208	ENST00000527680	CABLES1	Q8TDN4	633 aa		32.67	■■■□□ 2.82
TRAPPC4-208	ENST00000527680	UNC5CL	Q8IV45	518 aa		32.66	■■■□□ 2.82
TRAPPC4-208	ENST00000527680	TNS3	Q68CZ2	1445 aa		32.63	■■■□□ 2.81
TRAPPC4-208	ENST00000527680	ADGRB1	O14514	1584 aa		32.62	■■■□□ 2.81
TRAPPC4-208	ENST00000527680	SBNO1	A3KN83	1393 aa		32.61	■■■□□ 2.81
TRAPPC4-208	ENST00000527680	ANKAR	Q7Z5J8	1434 aa		32.6	■■■□□ 2.81
TRAPPC4-208	ENST00000527680	ARHGEF10	O15013	1369 aa		32.58	■■■□□ 2.81
TRAPPC4-208	ENST00000527680	WASL	O00401	505 aa	Predicted RBP	32.58	■■■□□ 2.81
TRAPPC4-208	ENST00000527680	EIF3A	Q14152	1382 aa	Known RBP	32.57	■■■□□ 2.8
TRAPPC4-208	ENST00000527680	GPRASP1	Q5JY77	1395 aa		32.57	■■■□□ 2.8
TRAPPC4-208	ENST00000527680	CCDC9	Q9Y3X0	531 aa	Known RBP	32.56	■■■□□ 2.8
TRAPPC4-208	ENST00000527680	NGDN	Q8NEJ9	315 aa	Known RBP	32.55	■■■□□ 2.8
TRAPPC4-208	ENST00000527680	SLIT2	O94813	1529 aa		32.55	■■■□□ 2.8
TRAPPC4-208	ENST00000527680	USP32	Q8NFA0	1604 aa		32.54	■■■□□ 2.8
TRAPPC4-208	ENST00000527680	ADGRB2	O60241	1585 aa		32.53	■■■□□ 2.8
TRAPPC4-208	ENST00000527680	PRR36	Q9H6K5	1346 aa		32.52	■■■□□ 2.8
TRAPPC4-208	ENST00000527680	PAK3	O75914	559 aa	Predicted RBP	32.51	■■■□□ 2.79
TRAPPC4-208	ENST00000527680	RALGAPB	Q86X10	1494 aa		32.5	■■■□□ 2.79
TRAPPC4-208	ENST00000527680	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	32.5	■■■□□ 2.79
TRAPPC4-208	ENST00000527680	FAM83G	A6ND36	823 aa		32.49	■■■□□ 2.79
TRAPPC4-208	ENST00000527680	VPS72	Q15906	364 aa		32.48	■■■□□ 2.79
TRAPPC4-208	ENST00000527680	CCDC125	Q86Z20	511 aa		32.48	■■■□□ 2.79
TRAPPC4-208	ENST00000527680	TULP4	Q9NRJ4	1543 aa		32.46	■■■□□ 2.79
TRAPPC4-208	ENST00000527680	NUDT16	Q96DE0	195 aa	Known RBP	32.46	■■■□□ 2.79
TRAPPC4-208	ENST00000527680	SEPT12	Q8IYM1	358 aa		32.44	■■■□□ 2.78
TRAPPC4-208	ENST00000527680	CDK19	Q9BWU1	502 aa		32.43	■■■□□ 2.78
TRAPPC4-208	ENST00000527680	GLI3	P10071	1580 aa		32.43	■■■□□ 2.78
TRAPPC4-208	ENST00000527680		A0A0G2JS52	829 aa		32.41	■■■□□ 2.78
TRAPPC4-208	ENST00000527680	MYT1	Q01538	1121 aa		32.41	■■■□□ 2.78
TRAPPC4-208	ENST00000527680	BTG4	Q9NY30	223 aa		32.4	■■■□□ 2.78
TRAPPC4-208	ENST00000527680	ARHGEF28	Q8N1W1	1705 aa	Known RBP	32.39	■■■□□ 2.78
TRAPPC4-208	ENST00000527680	ABCA3	Q99758	1704 aa		32.38	■■■□□ 2.77
TRAPPC4-208	ENST00000527680	TRPM3	Q9HCF6	1732 aa	Predicted RBP	32.38	■■■□□ 2.77
TRAPPC4-208	ENST00000527680	PLCH1	Q4KWH8	1693 aa		32.38	■■■□□ 2.77
TRAPPC4-208	ENST00000527680	ZRANB1	Q9UGI0	708 aa		32.38	■■■□□ 2.77
TRAPPC4-208	ENST00000527680	NWD2	Q9ULI1	1742 aa		32.37	■■■□□ 2.77
TRAPPC4-208	ENST00000527680	NBPF1	Q3BBV0	1214 aa		32.37	■■■□□ 2.77
TRAPPC4-208	ENST00000527680	ONECUT3	O60422	494 aa	Predicted RBP	32.34	■■■□□ 2.77
TRAPPC4-208	ENST00000527680	SF3B2	Q13435	895 aa	Known RBP	32.34	■■■□□ 2.77

Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms