RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ANKRD30BQ9BXX2 1392 aa14.94□□□□□ -0.02
VPS28-204ENST00000526054 ADGRF5Q8IZF2 1346 aa14.93□□□□□ -0.02
VPS28-204ENST00000526054 TECPR2O15040 1411 aa14.93□□□□□ -0.02
VPS28-204ENST00000526054 ORAI2Q96SN7 254 aa14.93□□□□□ -0.02
VPS28-204ENST00000526054 SOS2Q07890 1332 aaPredicted RBP14.92□□□□□ -0.02
VPS28-204ENST00000526054 PIK3C2GO75747 1445 aa14.92□□□□□ -0.02
VPS28-204ENST00000526054 RGL3Q3MIN7 710 aa14.92□□□□□ -0.02
VPS28-204ENST00000526054 MPHOSPH9Q99550 1183 aa14.92□□□□□ -0.02
VPS28-204ENST00000526054 RGS12O14924 1447 aa14.91□□□□□ -0.02
VPS28-204ENST00000526054 LRPPRCP42704 1394 aaKnown RBP14.9□□□□□ -0.02
VPS28-204ENST00000526054 FMN2Q9NZ56 1722 aa14.9□□□□□ -0.02
VPS28-204ENST00000526054 ADAMTS2O95450 1211 aa14.9□□□□□ -0.02
VPS28-204ENST00000526054 UPF1Q92900 1129 aaKnown RBP eCLIP14.89□□□□□ -0.03
VPS28-204ENST00000526054 STK26Q9P289 416 aa14.89□□□□□ -0.03
VPS28-204ENST00000526054 NPHP3Q7Z494 1330 aa14.89□□□□□ -0.03
VPS28-204ENST00000526054 MARF1Q9Y4F3 1742 aaKnown RBP14.89□□□□□ -0.03
VPS28-204ENST00000526054 PXDNQ92626 1479 aa14.89□□□□□ -0.03
VPS28-204ENST00000526054 KIF1AQ12756 1690 aa14.88□□□□□ -0.03
VPS28-204ENST00000526054 NGLY1Q96IV0 654 aa14.88□□□□□ -0.03
VPS28-204ENST00000526054 YTHDC2Q9H6S0 1430 aaKnown RBP14.87□□□□□ -0.03
VPS28-204ENST00000526054 ESCO1Q5FWF5 840 aa14.87□□□□□ -0.03
VPS28-204ENST00000526054 MYOM2P54296 1465 aa14.87□□□□□ -0.03
VPS28-204ENST00000526054 ABCC11Q96J66 1382 aa14.86□□□□□ -0.03
VPS28-204ENST00000526054 PLEKHH1Q9ULM0 1364 aa14.86□□□□□ -0.03
VPS28-204ENST00000526054 RBM6P78332 1123 aaKnown RBP14.86□□□□□ -0.03
VPS28-204ENST00000526054 QTRT2Q9H974 415 aaKnown RBP14.86□□□□□ -0.03
VPS28-204ENST00000526054 NRXN1Q9ULB1 1477 aa14.85□□□□□ -0.03
VPS28-204ENST00000526054 TMEM132EQ6IEE7 984 aa14.85□□□□□ -0.03
VPS28-204ENST00000526054 WAPLQ7Z5K2 1190 aa14.85□□□□□ -0.03
VPS28-204ENST00000526054 NUTM2FA1L443 756 aa14.84□□□□□ -0.03
VPS28-204ENST00000526054 USP21Q9UK80 565 aa14.84□□□□□ -0.03
VPS28-204ENST00000526054 FOXO3O43524 673 aa14.83□□□□□ -0.04
VPS28-204ENST00000526054 XPCQ01831 940 aaPredicted RBP14.83□□□□□ -0.04
VPS28-204ENST00000526054 RGPD8O14715 1765 aaPredicted RBP14.83□□□□□ -0.04
VPS28-204ENST00000526054 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.81□□□□□ -0.04
VPS28-204ENST00000526054 TRPC5Q9UL62 973 aaPredicted RBP14.81□□□□□ -0.04
VPS28-204ENST00000526054 ATRNO75882 1429 aa14.81□□□□□ -0.04
VPS28-204ENST00000526054 FNBP4Q8N3X1 1017 aaPredicted RBP14.8□□□□□ -0.04
VPS28-204ENST00000526054 USP32Q8NFA0 1604 aa14.8□□□□□ -0.04
VPS28-204ENST00000526054 DHX57Q6P158 1386 aaKnown RBP14.79□□□□□ -0.04
VPS28-204ENST00000526054 ATAD2Q6PL18 1390 aa14.79□□□□□ -0.04
VPS28-204ENST00000526054 DLC1Q96QB1 1528 aa14.79□□□□□ -0.04
VPS28-204ENST00000526054 C14orf93Q9H972 538 aaKnown RBP14.79□□□□□ -0.04
VPS28-204ENST00000526054 ADGRB2O60241 1585 aa14.78□□□□□ -0.04
VPS28-204ENST00000526054 PCGF6Q9BYE7 350 aa14.78□□□□□ -0.04
VPS28-204ENST00000526054 ABCA3Q99758 1704 aa14.78□□□□□ -0.04
VPS28-204ENST00000526054 BCL9LQ86UU0 1499 aa14.77□□□□□ -0.04
VPS28-204ENST00000526054 CFAP70Q5T0N1 1121 aa14.77□□□□□ -0.05
VPS28-204ENST00000526054 SIRT1Q96EB6 747 aa14.77□□□□□ -0.05
VPS28-204ENST00000526054 ADGRB1O14514 1584 aa14.77□□□□□ -0.05
VPS28-204ENST00000526054 TNS3Q68CZ2 1445 aa14.76□□□□□ -0.05
VPS28-204ENST00000526054 SPATA31A3Q5VYP0 1347 aa14.76□□□□□ -0.05
VPS28-204ENST00000526054 PRAM1Q96QH2 718 aa14.75□□□□□ -0.05
VPS28-204ENST00000526054 PLCH1Q4KWH8 1693 aa14.74□□□□□ -0.05
VPS28-204ENST00000526054 SAFB2Q14151 953 aaKnown RBP eCLIP14.74□□□□□ -0.05
VPS28-204ENST00000526054 PHF8Q9UPP1 1060 aa14.74□□□□□ -0.05
VPS28-204ENST00000526054 ANKARQ7Z5J8 1434 aa14.74□□□□□ -0.05
VPS28-204ENST00000526054 SLIT2O94813 1529 aa14.73□□□□□ -0.05
VPS28-204ENST00000526054 KRT28Q7Z3Y7 464 aa14.73□□□□□ -0.05
VPS28-204ENST00000526054 SRCAPQ6ZRS2 3230 aa14.73□□□□□ -0.05
VPS28-204ENST00000526054 GLI3P10071 1580 aa14.73□□□□□ -0.05
VPS28-204ENST00000526054 HAP1P54257 671 aaPredicted RBP14.72□□□□□ -0.05
VPS28-204ENST00000526054 POGKQ9P215 609 aa14.72□□□□□ -0.05
VPS28-204ENST00000526054 NWD2Q9ULI1 1742 aa14.72□□□□□ -0.05
VPS28-204ENST00000526054 PSME1Q06323 249 aa14.71□□□□□ -0.05
VPS28-204ENST00000526054 TRPM3Q9HCF6 1732 aaPredicted RBP14.71□□□□□ -0.05
VPS28-204ENST00000526054 SBNO1A3KN83 1393 aa14.71□□□□□ -0.06
VPS28-204ENST00000526054 ARHGEF10O15013 1369 aa14.71□□□□□ -0.06
VPS28-204ENST00000526054 RALGAPBQ86X10 1494 aa14.7□□□□□ -0.06
VPS28-204ENST00000526054 ARHGEF28Q8N1W1 1705 aaKnown RBP14.7□□□□□ -0.06
VPS28-204ENST00000526054 GJD4Q96KN9 370 aaPredicted RBP14.7□□□□□ -0.06
VPS28-204ENST00000526054 TULP4Q9NRJ4 1543 aa14.7□□□□□ -0.06
VPS28-204ENST00000526054 EIF3AQ14152 1382 aaKnown RBP14.7□□□□□ -0.06
VPS28-204ENST00000526054 EP400Q96L91 3159 aa14.69□□□□□ -0.06
VPS28-204ENST00000526054 UNC5CLQ8IV45 518 aa14.69□□□□□ -0.06
VPS28-204ENST00000526054 ITSN1Q15811 1721 aa14.69□□□□□ -0.06
VPS28-204ENST00000526054 PLEKHG5O94827 1062 aa14.68□□□□□ -0.06
VPS28-204ENST00000526054 LMOD2Q6P5Q4 547 aa14.68□□□□□ -0.06
VPS28-204ENST00000526054 TRAK1Q9UPV9 953 aa14.68□□□□□ -0.06
VPS28-204ENST00000526054 BRWD3Q6RI45 1802 aa14.68□□□□□ -0.06
VPS28-204ENST00000526054 ALS2Q96Q42 1657 aa14.68□□□□□ -0.06
VPS28-204ENST00000526054 PMFBP1Q8TBY8 1022 aa14.67□□□□□ -0.06
VPS28-204ENST00000526054 CABLES1Q8TDN4 633 aa14.67□□□□□ -0.06
VPS28-204ENST00000526054 DCAF11Q8TEB1 546 aa14.67□□□□□ -0.06
VPS28-204ENST00000526054 HIRIP3Q9BW71 556 aaPredicted RBP14.67□□□□□ -0.06
VPS28-204ENST00000526054 KDM2AQ9Y2K7 1162 aa14.67□□□□□ -0.06
VPS28-204ENST00000526054 MINK1Q8N4C8 1332 aaPredicted RBP14.66□□□□□ -0.06
VPS28-204ENST00000526054 NRAPQ86VF7 1730 aa14.66□□□□□ -0.06
VPS28-204ENST00000526054 CRYBG1Q9Y4K1 1723 aa14.64□□□□□ -0.07
VPS28-204ENST00000526054 GPRASP1Q5JY77 1395 aa14.64□□□□□ -0.07
VPS28-204ENST00000526054 PRR36Q9H6K5 1346 aa14.64□□□□□ -0.07
VPS28-204ENST00000526054 COL14A1Q05707 1796 aaKnown RBP14.63□□□□□ -0.07
VPS28-204ENST00000526054 CCDC125Q86Z20 511 aa14.63□□□□□ -0.07
VPS28-204ENST00000526054 STAC3Q96MF2 364 aa14.63□□□□□ -0.07
VPS28-204ENST00000526054 WASLO00401 505 aaPredicted RBP14.62□□□□□ -0.07
VPS28-204ENST00000526054 BLMP54132 1417 aaPredicted RBP14.62□□□□□ -0.07
VPS28-204ENST00000526054 VPS72Q15906 364 aa14.62□□□□□ -0.07
VPS28-204ENST00000526054 KIAA1210Q9ULL0 1709 aa14.62□□□□□ -0.07
VPS28-204ENST00000526054 CCDC9Q9Y3X0 531 aaKnown RBP14.62□□□□□ -0.07
VPS28-204ENST00000526054 ATP7BP35670 1465 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms