RNA–Protein interactions for RNA: ENST00000525209.5

CD44-213, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 574 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-213ENST00000525209 VPS9D1Q9Y2B5 631 aa6.37□□□□□ -1.39
CD44-213ENST00000525209 LOC102724159A0A0B4J2E5 919 aa6.36□□□□□ -1.39
CD44-213ENST00000525209 TMEM88BA6NKF7 163 aa6.36□□□□□ -1.39
CD44-213ENST00000525209 NEFLP07196 543 aa6.36□□□□□ -1.39
CD44-213ENST00000525209 PTPREP23469 700 aa6.36□□□□□ -1.39
CD44-213ENST00000525209 PWP2Q15269 919 aaKnown RBP6.36□□□□□ -1.39
CD44-213ENST00000525209 ZNF526Q8TF50 670 aaPredicted RBP6.36□□□□□ -1.39
CD44-213ENST00000525209 ATP1B4Q9UN42 357 aaPredicted RBP6.36□□□□□ -1.39
CD44-213ENST00000525209 RIPOR2Q9Y4F9 1068 aa6.36□□□□□ -1.39
CD44-213ENST00000525209 PCDHGA10Q9Y5H3 936 aa6.36□□□□□ -1.39
CD44-213ENST00000525209 SF3A1Q15459 793 aaKnown RBP6.35□□□□□ -1.39
CD44-213ENST00000525209 KCTD12Q96CX2 325 aaKnown RBP6.35□□□□□ -1.39
CD44-213ENST00000525209 TMUB1Q9BVT8 246 aa6.35□□□□□ -1.39
CD44-213ENST00000525209 RFC5P40937 340 aa6.34□□□□□ -1.39
CD44-213ENST00000525209 TMEM259Q4ZIN3 620 aa6.34□□□□□ -1.39
CD44-213ENST00000525209 GIMAP6Q6P9H5 292 aa6.34□□□□□ -1.39
CD44-213ENST00000525209 MTMR14Q8NCE2 650 aa6.34□□□□□ -1.39
CD44-213ENST00000525209 BCL2L13Q9BXK5 485 aa6.34□□□□□ -1.39
CD44-213ENST00000525209 POLR3EQ9NVU0 708 aa6.34□□□□□ -1.39
CD44-213ENST00000525209 PPP1R1BQ9UD71 204 aaPredicted RBP6.34□□□□□ -1.39
CD44-213ENST00000525209 FCHSD2O94868 740 aa6.33□□□□□ -1.4
CD44-213ENST00000525209 COL9A1P20849 921 aa6.33□□□□□ -1.4
CD44-213ENST00000525209 VAMP1P23763 118 aa6.33□□□□□ -1.4
CD44-213ENST00000525209 ABL2P42684 1182 aa6.33□□□□□ -1.4
CD44-213ENST00000525209 DDX12PQ92771 950 aa6.33□□□□□ -1.4
CD44-213ENST00000525209 STAC3Q96MF2 364 aa6.33□□□□□ -1.4
CD44-213ENST00000525209 ZBED2Q9BTP6 218 aa6.33□□□□□ -1.4
CD44-213ENST00000525209 PROX2Q3B8N5 592 aa6.32□□□□□ -1.4
CD44-213ENST00000525209 NAALADL2Q58DX5 795 aa6.32□□□□□ -1.4
CD44-213ENST00000525209 NOM1Q5C9Z4 860 aaKnown RBP6.32□□□□□ -1.4
CD44-213ENST00000525209 HDGFL1Q5TGJ6 251 aa6.32□□□□□ -1.4
CD44-213ENST00000525209 B4GALNT3Q6L9W6 998 aa6.32□□□□□ -1.4
CD44-213ENST00000525209 RBM33Q96EV2 1170 aaKnown RBP6.32□□□□□ -1.4
CD44-213ENST00000525209 SOCS7O14512 581 aa6.31□□□□□ -1.4
CD44-213ENST00000525209 PHF14O94880 888 aa6.31□□□□□ -1.4
CD44-213ENST00000525209 ATG7O95352 703 aa6.31□□□□□ -1.4
CD44-213ENST00000525209 CLCN1P35523 988 aa6.31□□□□□ -1.4
CD44-213ENST00000525209 TYW1BQ6NUM6 668 aa6.31□□□□□ -1.4
CD44-213ENST00000525209 ZNF662Q6ZS27 426 aa6.31□□□□□ -1.4
CD44-213ENST00000525209 CCER1Q8TC90 406 aaPredicted RBP6.31□□□□□ -1.4
CD44-213ENST00000525209 GIPC2Q8TF65 315 aa6.31□□□□□ -1.4
CD44-213ENST00000525209 PPP1R12CQ9BZL4 782 aa6.31□□□□□ -1.4
CD44-213ENST00000525209 PRM3Q9NNZ6 103 aa6.31□□□□□ -1.4
CD44-213ENST00000525209 PPME1Q9Y570 386 aa6.31□□□□□ -1.4
CD44-213ENST00000525209 SSTR3P32745 418 aaPredicted RBP6.3□□□□□ -1.4
CD44-213ENST00000525209 MYSM1Q5VVJ2 828 aa6.3□□□□□ -1.4
CD44-213ENST00000525209 EXOC8Q8IYI6 725 aa6.3□□□□□ -1.4
CD44-213ENST00000525209 ADAMTS19Q8TE59 1207 aa6.3□□□□□ -1.4
CD44-213ENST00000525209 BEGAINQ9BUH8 593 aa6.3□□□□□ -1.4
CD44-213ENST00000525209 MYH16Q9H6N6 1097 aa6.3□□□□□ -1.4
CD44-213ENST00000525209 HCSTQ9UBK5 93 aa6.3□□□□□ -1.4
CD44-213ENST00000525209 BHMG1C9JSJ3 638 aaPredicted RBP6.29□□□□□ -1.4
CD44-213ENST00000525209 PTPN5P54829 565 aa6.29□□□□□ -1.4
CD44-213ENST00000525209 IRX6P78412 446 aaPredicted RBP6.29□□□□□ -1.4
CD44-213ENST00000525209 MICAL1Q8TDZ2 1067 aa6.29□□□□□ -1.4
CD44-213ENST00000525209 SLC4A5Q9BY07 1137 aa6.29□□□□□ -1.4
CD44-213ENST00000525209 TBC1D2Q9BYX2 928 aa6.29□□□□□ -1.4
CD44-213ENST00000525209 GPCPD1Q9NPB8 672 aa6.29□□□□□ -1.4
CD44-213ENST00000525209 SUGT1Q9Y2Z0 365 aa6.29□□□□□ -1.4
CD44-213ENST00000525209 PPP1R3GB7ZBB8 358 aa6.28□□□□□ -1.4
CD44-213ENST00000525209 CLK2P49760 499 aaKnown RBP6.28□□□□□ -1.4
CD44-213ENST00000525209 PPP2R2DQ66LE6 453 aa6.28□□□□□ -1.4
CD44-213ENST00000525209 DPH6Q7L8W6 267 aa6.28□□□□□ -1.4
CD44-213ENST00000525209 TBC1D2BQ9UPU7 963 aa6.28□□□□□ -1.4
CD44-213ENST00000525209 NISCHQ9Y2I1 1504 aa6.28□□□□□ -1.4
CD44-213ENST00000525209 GRXCR2A6NFK2 248 aa6.27□□□□□ -1.41
CD44-213ENST00000525209 TPD52L2O43399 206 aaKnown RBP6.27□□□□□ -1.41
CD44-213ENST00000525209 C6orf132Q5T0Z8 1188 aa6.27□□□□□ -1.41
CD44-213ENST00000525209 FBXO31Q5XUX0 539 aaPredicted RBP6.27□□□□□ -1.41
CD44-213ENST00000525209 NOP9Q86U38 636 aaKnown RBP6.27□□□□□ -1.41
CD44-213ENST00000525209 MRPL50Q8N5N7 158 aaKnown RBP6.27□□□□□ -1.41
CD44-213ENST00000525209 PALM3A6NDB9 673 aaPredicted RBP6.26□□□□□ -1.41
CD44-213ENST00000525209 GOLGA8CPA6NN73 597 aa6.26□□□□□ -1.41
CD44-213ENST00000525209 RAB11FIP3O75154 756 aa6.26□□□□□ -1.41
CD44-213ENST00000525209 OSBPP22059 807 aa6.26□□□□□ -1.41
CD44-213ENST00000525209 PRIM1P49642 420 aaKnown RBP6.26□□□□□ -1.41
CD44-213ENST00000525209 ZNF326Q5BKZ1 582 aaKnown RBP6.26□□□□□ -1.41
CD44-213ENST00000525209 WNT2BQ93097 391 aa6.26□□□□□ -1.41
CD44-213ENST00000525209 EPAS1Q99814 870 aa6.26□□□□□ -1.41
CD44-213ENST00000525209 SLC52A1Q9NWF4 448 aa6.26□□□□□ -1.41
CD44-213ENST00000525209 PLA2G2EQ9NZK7 142 aa6.26□□□□□ -1.41
CD44-213ENST00000525209 LMOD1P29536 600 aaPredicted RBP6.25□□□□□ -1.41
CD44-213ENST00000525209 MDM2Q00987 491 aaPredicted RBP6.25□□□□□ -1.41
CD44-213ENST00000525209 GORABQ5T7V8 394 aa6.25□□□□□ -1.41
CD44-213ENST00000525209 THSD4Q6ZMP0 1018 aa6.25□□□□□ -1.41
CD44-213ENST00000525209 NPAS4Q8IUM7 802 aa6.25□□□□□ -1.41
CD44-213ENST00000525209 TEX2Q8IWB9 1127 aa6.25□□□□□ -1.41
CD44-213ENST00000525209 RBM46Q8TBY0 533 aaKnown RBP6.25□□□□□ -1.41
CD44-213ENST00000525209 NBPF3Q9H094 633 aa6.25□□□□□ -1.41
CD44-213ENST00000525209 KIAA1468Q9P260 1216 aa6.25□□□□□ -1.41
CD44-213ENST00000525209 RBM27Q9P2N5 1060 aaKnown RBP6.25□□□□□ -1.41
CD44-213ENST00000525209 MAP3K7O43318 606 aa6.24□□□□□ -1.41
CD44-213ENST00000525209 CDCA7Q9BWT1 371 aaPredicted RBP6.24□□□□□ -1.41
CD44-213ENST00000525209 SEPT9Q9UHD8 586 aaPredicted RBP6.24□□□□□ -1.41
CD44-213ENST00000525209 RABGEF1Q9UJ41 708 aa6.24□□□□□ -1.41
CD44-213ENST00000525209 SBNO2Q9Y2G9 1366 aa6.23□□□□□ -1.41
CD44-213ENST00000525209 RECKO95980 971 aa6.23□□□□□ -1.41
CD44-213ENST00000525209 EN1Q05925 392 aaPredicted RBP6.23□□□□□ -1.41
CD44-213ENST00000525209 PTGDRQ13258 359 aa6.23□□□□□ -1.41
CD44-213ENST00000525209 CDCA8Q53HL2 280 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms