RNA–Protein interactions for RNA: ENST00000525141.1

SMCO4-202, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SMCO4, Length 889 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-202ENST00000525141 LRRC59Q96AG4 307 aaKnown RBP18.47■□□□□ 0.55
SMCO4-202ENST00000525141 SIRT1Q96EB6 747 aa18.47■□□□□ 0.55
SMCO4-202ENST00000525141 NRXN1Q9ULB1 1477 aa18.46■□□□□ 0.55
SMCO4-202ENST00000525141 TECPR2O15040 1411 aa18.46■□□□□ 0.55
SMCO4-202ENST00000525141 NHSL1Q5SYE7 1610 aa18.45■□□□□ 0.54
SMCO4-202ENST00000525141 YTHDC2Q9H6S0 1430 aaKnown RBP18.44■□□□□ 0.54
SMCO4-202ENST00000525141 NUTM2BA6NNL0 878 aaPredicted RBP18.44■□□□□ 0.54
SMCO4-202ENST00000525141 NUTM2EB1AL46 878 aaPredicted RBP18.44■□□□□ 0.54
SMCO4-202ENST00000525141 NUTM2AQ8IVF1 878 aaPredicted RBP18.44■□□□□ 0.54
SMCO4-202ENST00000525141 SOS2Q07890 1332 aaPredicted RBP18.44■□□□□ 0.54
SMCO4-202ENST00000525141 KDM2AQ9Y2K7 1162 aa18.43■□□□□ 0.54
SMCO4-202ENST00000525141 SHPRHQ149N8 1683 aa18.43■□□□□ 0.54
SMCO4-202ENST00000525141 NUTM2FA1L443 756 aa18.42■□□□□ 0.54
SMCO4-202ENST00000525141 ESCO1Q5FWF5 840 aa18.41■□□□□ 0.54
SMCO4-202ENST00000525141 DCAF11Q8TEB1 546 aa18.41■□□□□ 0.54
SMCO4-202ENST00000525141 DHX57Q6P158 1386 aaKnown RBP18.41■□□□□ 0.54
SMCO4-202ENST00000525141 MYOM2P54296 1465 aa18.4■□□□□ 0.54
SMCO4-202ENST00000525141 TRIM26Q12899 539 aaPredicted RBP18.4■□□□□ 0.54
SMCO4-202ENST00000525141 PNPLA6Q8IY17 1366 aa18.4■□□□□ 0.54
SMCO4-202ENST00000525141 LAMC1P11047 1609 aa18.38■□□□□ 0.53
SMCO4-202ENST00000525141 FOXO3O43524 673 aa18.38■□□□□ 0.53
SMCO4-202ENST00000525141 MEX3CQ5U5Q3 659 aaKnown RBP18.38■□□□□ 0.53
SMCO4-202ENST00000525141 KNDC1Q76NI1 1749 aa18.36■□□□□ 0.53
SMCO4-202ENST00000525141 PRAM1Q96QH2 718 aa18.36■□□□□ 0.53
SMCO4-202ENST00000525141 CDC42BPGQ6DT37 1551 aa18.35■□□□□ 0.53
SMCO4-202ENST00000525141 XPCQ01831 940 aaPredicted RBP18.35■□□□□ 0.53
SMCO4-202ENST00000525141 SAFB2Q14151 953 aaKnown RBP eCLIP18.35■□□□□ 0.53
SMCO4-202ENST00000525141 ZNF772Q68DY9 489 aaPredicted RBP18.35■□□□□ 0.53
SMCO4-202ENST00000525141 TRAK1Q9UPV9 953 aa18.34■□□□□ 0.53
SMCO4-202ENST00000525141 STAC3Q96MF2 364 aa18.33■□□□□ 0.52
SMCO4-202ENST00000525141 ADGRB1O14514 1584 aa18.33■□□□□ 0.52
SMCO4-202ENST00000525141 AFF2P51816 1311 aa18.32■□□□□ 0.52
SMCO4-202ENST00000525141 NPHP3Q7Z494 1330 aa18.31■□□□□ 0.52
SMCO4-202ENST00000525141 ADAMTS2O95450 1211 aa18.31■□□□□ 0.52
SMCO4-202ENST00000525141 PXDNQ92626 1479 aa18.31■□□□□ 0.52
SMCO4-202ENST00000525141 C8orf37Q96NL8 207 aa18.3■□□□□ 0.52
SMCO4-202ENST00000525141 POGKQ9P215 609 aa18.3■□□□□ 0.52
SMCO4-202ENST00000525141 RGPD8O14715 1765 aaPredicted RBP18.29■□□□□ 0.52
SMCO4-202ENST00000525141 FMN2Q9NZ56 1722 aa18.29■□□□□ 0.52
SMCO4-202ENST00000525141 RXRBP28702 533 aa18.28■□□□□ 0.52
SMCO4-202ENST00000525141 KRT28Q7Z3Y7 464 aa18.28■□□□□ 0.52
SMCO4-202ENST00000525141 QTRT2Q9H974 415 aaKnown RBP18.28■□□□□ 0.52
SMCO4-202ENST00000525141 DLC1Q96QB1 1528 aa18.28■□□□□ 0.52
SMCO4-202ENST00000525141 NGLY1Q96IV0 654 aa18.27■□□□□ 0.52
SMCO4-202ENST00000525141 HIRIP3Q9BW71 556 aaPredicted RBP18.27■□□□□ 0.52
SMCO4-202ENST00000525141 PHF8Q9UPP1 1060 aa18.27■□□□□ 0.52
SMCO4-202ENST00000525141 SPATA31A3Q5VYP0 1347 aa18.25■□□□□ 0.51
SMCO4-202ENST00000525141 NBPF1Q3BBV0 1214 aa18.25■□□□□ 0.51
SMCO4-202ENST00000525141 FNBP4Q8N3X1 1017 aaPredicted RBP18.25■□□□□ 0.51
SMCO4-202ENST00000525141 MINK1Q8N4C8 1332 aaPredicted RBP18.24■□□□□ 0.51
SMCO4-202ENST00000525141 SIN3AQ96ST3 1273 aa18.24■□□□□ 0.51
SMCO4-202ENST00000525141 PRR36Q9H6K5 1346 aa18.23■□□□□ 0.51
SMCO4-202ENST00000525141 PMFBP1Q8TBY8 1022 aa18.23■□□□□ 0.51
SMCO4-202ENST00000525141 COL22A1Q8NFW1 1626 aaPredicted RBP18.23■□□□□ 0.51
SMCO4-202ENST00000525141 WASLO00401 505 aaPredicted RBP18.22■□□□□ 0.51
SMCO4-202ENST00000525141 USP32Q8NFA0 1604 aa18.21■□□□□ 0.51
SMCO4-202ENST00000525141 RBM6P78332 1123 aaKnown RBP18.21■□□□□ 0.51
SMCO4-202ENST00000525141 USP21Q9UK80 565 aa18.21■□□□□ 0.51
SMCO4-202ENST00000525141 L3MBTL2Q969R5 705 aa18.2■□□□□ 0.5
SMCO4-202ENST00000525141 PSME1Q06323 249 aa18.19■□□□□ 0.5
SMCO4-202ENST00000525141 CABLES1Q8TDN4 633 aa18.19■□□□□ 0.5
SMCO4-202ENST00000525141 UPF1Q92900 1129 aaKnown RBP eCLIP18.19■□□□□ 0.5
SMCO4-202ENST00000525141 ANKARQ7Z5J8 1434 aa18.17■□□□□ 0.5
SMCO4-202ENST00000525141 BCL9LQ86UU0 1499 aa18.17■□□□□ 0.5
SMCO4-202ENST00000525141 ADGRB2O60241 1585 aa18.17■□□□□ 0.5
SMCO4-202ENST00000525141 KIF1AQ12756 1690 aa18.16■□□□□ 0.5
SMCO4-202ENST00000525141 SBNO1A3KN83 1393 aa18.16■□□□□ 0.5
SMCO4-202ENST00000525141 CDK12Q9NYV4 1490 aaPredicted RBP18.15■□□□□ 0.5
SMCO4-202ENST00000525141 NUDT16Q96DE0 195 aaKnown RBP18.15■□□□□ 0.5
SMCO4-202ENST00000525141 CDK19Q9BWU1 502 aa18.15■□□□□ 0.5
SMCO4-202ENST00000525141 TRPC5Q9UL62 973 aaPredicted RBP18.15■□□□□ 0.5
SMCO4-202ENST00000525141 NEUROD1Q13562 356 aa18.14■□□□□ 0.49
SMCO4-202ENST00000525141 ATRNO75882 1429 aa18.14■□□□□ 0.49
SMCO4-202ENST00000525141 PLEKHG5O94827 1062 aa18.13■□□□□ 0.49
SMCO4-202ENST00000525141 RGS12O14924 1447 aa18.13■□□□□ 0.49
SMCO4-202ENST00000525141 ARHGEF28Q8N1W1 1705 aaKnown RBP18.12■□□□□ 0.49
SMCO4-202ENST00000525141 TNS3Q68CZ2 1445 aa18.12■□□□□ 0.49
SMCO4-202ENST00000525141 KIAA1210Q9ULL0 1709 aa18.12■□□□□ 0.49
SMCO4-202ENST00000525141 FAM83GA6ND36 823 aa18.11■□□□□ 0.49
SMCO4-202ENST00000525141 MAPK8IP2Q13387 824 aaPredicted RBP18.11■□□□□ 0.49
SMCO4-202ENST00000525141 LMOD2Q6P5Q4 547 aa18.11■□□□□ 0.49
SMCO4-202ENST00000525141 MARF1Q9Y4F3 1742 aaKnown RBP18.11■□□□□ 0.49
SMCO4-202ENST00000525141 TULP4Q9NRJ4 1543 aa18.1■□□□□ 0.49
SMCO4-202ENST00000525141 UNC5CLQ8IV45 518 aa18.1■□□□□ 0.49
SMCO4-202ENST00000525141 GJD4Q96KN9 370 aaPredicted RBP18.1■□□□□ 0.49
SMCO4-202ENST00000525141 SLIT2O94813 1529 aa18.09■□□□□ 0.49
SMCO4-202ENST00000525141 PCGF6Q9BYE7 350 aa18.09■□□□□ 0.49
SMCO4-202ENST00000525141 NBPF8Q3BBV2 869 aa18.08■□□□□ 0.48
SMCO4-202ENST00000525141 NGDNQ8NEJ9 315 aaKnown RBP18.08■□□□□ 0.48
SMCO4-202ENST00000525141 TRPM3Q9HCF6 1732 aaPredicted RBP18.07■□□□□ 0.48
SMCO4-202ENST00000525141 PLEKHG3A1L390 1219 aa18.07■□□□□ 0.48
SMCO4-202ENST00000525141 ARHGEF10O15013 1369 aa18.06■□□□□ 0.48
SMCO4-202ENST00000525141 EIF3AQ14152 1382 aaKnown RBP18.06■□□□□ 0.48
SMCO4-202ENST00000525141 GPRASP1Q5JY77 1395 aa18.06■□□□□ 0.48
SMCO4-202ENST00000525141 CCDC61Q9Y6R9 512 aa18.06■□□□□ 0.48
SMCO4-202ENST00000525141 ATP7BP35670 1465 aa18.06■□□□□ 0.48
SMCO4-202ENST00000525141 ACEP12821 1306 aa18.04■□□□□ 0.48
SMCO4-202ENST00000525141 CABP2Q9NPB3 220 aa18.04■□□□□ 0.48
SMCO4-202ENST00000525141 CENPJQ9HC77 1338 aaPredicted RBP18.03■□□□□ 0.48
SMCO4-202ENST00000525141 ALS2Q96Q42 1657 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms