RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 KIAA1522Q9P206 1035 aaPredicted RBP8.21□□□□□ -1.1
USP47-204ENST00000525078 RTL5Q5HYW3 569 aaPredicted RBP8.2□□□□□ -1.1
USP47-204ENST00000525078 CCDC125Q86Z20 511 aa8.2□□□□□ -1.1
USP47-204ENST00000525078 KHSRPQ92945 711 aaKnown RBP eCLIP8.2□□□□□ -1.1
USP47-204ENST00000525078 MOXD2PA6NHM9 499 aa8.19□□□□□ -1.1
USP47-204ENST00000525078 GJD4Q96KN9 370 aaPredicted RBP8.19□□□□□ -1.1
USP47-204ENST00000525078 ALG2Q9H553 416 aa8.19□□□□□ -1.1
USP47-204ENST00000525078 TXNDC2Q86VQ3 553 aa8.18□□□□□ -1.1
USP47-204ENST00000525078 BCL2L13Q9BXK5 485 aa8.18□□□□□ -1.1
USP47-204ENST00000525078 TCF3P15923 654 aa8.17□□□□□ -1.1
USP47-204ENST00000525078 NDUFV2P19404 249 aa8.17□□□□□ -1.1
USP47-204ENST00000525078 RBM46Q8TBY0 533 aaKnown RBP8.17□□□□□ -1.1
USP47-204ENST00000525078 SIRT1Q96EB6 747 aa8.17□□□□□ -1.1
USP47-204ENST00000525078 DRC1Q96MC2 740 aa8.17□□□□□ -1.1
USP47-204ENST00000525078 ANO8Q9HCE9 1232 aaPredicted RBP8.17□□□□□ -1.1
USP47-204ENST00000525078 PCDHB15Q9Y5E8 787 aa8.17□□□□□ -1.1
USP47-204ENST00000525078 ZNF16P17020 682 aaPredicted RBP8.16□□□□□ -1.1
USP47-204ENST00000525078 CANXP27824 592 aaKnown RBP8.16□□□□□ -1.1
USP47-204ENST00000525078 SEMA3FQ13275 785 aa8.16□□□□□ -1.1
USP47-204ENST00000525078 TYW1BQ6NUM6 668 aa8.16□□□□□ -1.1
USP47-204ENST00000525078 ANKRD13DQ6ZTN6 518 aa8.16□□□□□ -1.1
USP47-204ENST00000525078 CERKQ8TCT0 537 aa8.16□□□□□ -1.1
USP47-204ENST00000525078 CABLES1Q8TDN4 633 aa8.16□□□□□ -1.1
USP47-204ENST00000525078 UCN2Q96RP3 112 aa8.16□□□□□ -1.1
USP47-204ENST00000525078 MAFBQ9Y5Q3 323 aaPredicted RBP8.16□□□□□ -1.1
USP47-204ENST00000525078 CD46P15529 392 aa8.15□□□□□ -1.1
USP47-204ENST00000525078 SOX11P35716 441 aa8.15□□□□□ -1.1
USP47-204ENST00000525078 GJA5P36382 358 aa8.15□□□□□ -1.1
USP47-204ENST00000525078 PCDHGA10Q9Y5H3 936 aa8.15□□□□□ -1.1
USP47-204ENST00000525078 DNAJC14Q6Y2X3 702 aaPredicted RBP8.14□□□□□ -1.11
USP47-204ENST00000525078 SULF1Q8IWU6 871 aa8.14□□□□□ -1.11
USP47-204ENST00000525078 PRR7Q8TB68 274 aa8.14□□□□□ -1.11
USP47-204ENST00000525078 GIPC2Q8TF65 315 aa8.14□□□□□ -1.11
USP47-204ENST00000525078 ARID4AP29374 1257 aaPredicted RBP8.13□□□□□ -1.11
USP47-204ENST00000525078 PRPF38BQ5VTL8 546 aaKnown RBP8.13□□□□□ -1.11
USP47-204ENST00000525078 PTCD2Q8WV60 388 aaKnown RBP8.13□□□□□ -1.11
USP47-204ENST00000525078 SREK1Q8WXA9 508 aaKnown RBP8.13□□□□□ -1.11
USP47-204ENST00000525078 ZBTB3Q9H5J0 574 aa8.13□□□□□ -1.11
USP47-204ENST00000525078 HMX1Q9NP08 348 aaPredicted RBP8.13□□□□□ -1.11
USP47-204ENST00000525078 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.12□□□□□ -1.11
USP47-204ENST00000525078 DDX11L8A8MPP1 907 aa8.12□□□□□ -1.11
USP47-204ENST00000525078 LSM11P83369 360 aaKnown RBP eCLIP8.12□□□□□ -1.11
USP47-204ENST00000525078 TBC1D9Q6ZT07 1266 aa8.12□□□□□ -1.11
USP47-204ENST00000525078 PPP1R1BQ9UD71 204 aaPredicted RBP8.12□□□□□ -1.11
USP47-204ENST00000525078 SMARCA5O60264 1052 aaPredicted RBP8.11□□□□□ -1.11
USP47-204ENST00000525078 MARSP56192 900 aaKnown RBP8.11□□□□□ -1.11
USP47-204ENST00000525078 CTDSPL2Q05D32 466 aa8.11□□□□□ -1.11
USP47-204ENST00000525078 TMEM164Q5U3C3 297 aa8.11□□□□□ -1.11
USP47-204ENST00000525078 TSC1Q92574 1164 aa8.11□□□□□ -1.11
USP47-204ENST00000525078 TRIM34Q9BYJ4 488 aa8.11□□□□□ -1.11
USP47-204ENST00000525078 ATP9BO43861 1147 aa8.1□□□□□ -1.11
USP47-204ENST00000525078 ZNF326Q5BKZ1 582 aaKnown RBP8.1□□□□□ -1.11
USP47-204ENST00000525078 POTEEQ6S8J3 1075 aa8.1□□□□□ -1.11
USP47-204ENST00000525078 POLR3GLQ9BT43 218 aa8.1□□□□□ -1.11
USP47-204ENST00000525078 BIN2Q9UBW5 565 aaPredicted RBP8.1□□□□□ -1.11
USP47-204ENST00000525078 RCCD1A6NED2 376 aa8.09□□□□□ -1.11
USP47-204ENST00000525078 GPR37L1O60883 481 aa8.09□□□□□ -1.11
USP47-204ENST00000525078 ELOAQ14241 798 aaKnown RBP8.09□□□□□ -1.11
USP47-204ENST00000525078 PNMA1Q8ND90 353 aa8.09□□□□□ -1.11
USP47-204ENST00000525078 HELBQ8NG08 1087 aaPredicted RBP8.09□□□□□ -1.11
USP47-204ENST00000525078 STK32AQ8WU08 396 aa8.09□□□□□ -1.11
USP47-204ENST00000525078 C8orf37Q96NL8 207 aa8.09□□□□□ -1.11
USP47-204ENST00000525078 RBM27Q9P2N5 1060 aaKnown RBP8.09□□□□□ -1.11
USP47-204ENST00000525078 NOVA2Q9UNW9 492 aaKnown RBP8.09□□□□□ -1.11
USP47-204ENST00000525078 NUDT7P0C024 238 aa8.08□□□□□ -1.12
USP47-204ENST00000525078 SOWAHDA6NJG2 315 aa8.07□□□□□ -1.12
USP47-204ENST00000525078 SLC34A2O95436 690 aa8.07□□□□□ -1.12
USP47-204ENST00000525078 C6orf132Q5T0Z8 1188 aa8.07□□□□□ -1.12
USP47-204ENST00000525078 TTC13Q8NBP0 860 aa8.07□□□□□ -1.12
USP47-204ENST00000525078 SPATA32Q96LK8 384 aa8.07□□□□□ -1.12
USP47-204ENST00000525078 ZMIZ1Q9ULJ6 1067 aa8.07□□□□□ -1.12
USP47-204ENST00000525078 ZC3H6P61129 1189 aaKnown RBP8.06□□□□□ -1.12
USP47-204ENST00000525078 EIF4G2P78344 907 aaKnown RBP eCLIP8.06□□□□□ -1.12
USP47-204ENST00000525078 PHLDB3Q6NSJ2 640 aa8.06□□□□□ -1.12
USP47-204ENST00000525078 LRRN4Q8WUT4 740 aa8.06□□□□□ -1.12
USP47-204ENST00000525078 LHX6Q9UPM6 363 aa8.06□□□□□ -1.12
USP47-204ENST00000525078 ANKRD33BA6NCL7 494 aa8.05□□□□□ -1.12
USP47-204ENST00000525078 NCLP19338 710 aaKnown RBP8.05□□□□□ -1.12
USP47-204ENST00000525078 SSFA2P28290 1259 aa8.05□□□□□ -1.12
USP47-204ENST00000525078 PBX2P40425 430 aa8.05□□□□□ -1.12
USP47-204ENST00000525078 PRSS12P56730 875 aa8.05□□□□□ -1.12
USP47-204ENST00000525078 KANK4Q5T7N3 995 aaPredicted RBP8.05□□□□□ -1.12
USP47-204ENST00000525078 RDH13Q8NBN7 331 aa8.05□□□□□ -1.12
USP47-204ENST00000525078 JPH4Q96JJ6 628 aa8.05□□□□□ -1.12
USP47-204ENST00000525078 AXIN2Q9Y2T1 843 aa8.05□□□□□ -1.12
USP47-204ENST00000525078 PCDHGA4Q9Y5G9 962 aa8.05□□□□□ -1.12
USP47-204ENST00000525078 KDM4AO75164 1064 aa8.04□□□□□ -1.12
USP47-204ENST00000525078 FDX1P10109 184 aa8.04□□□□□ -1.12
USP47-204ENST00000525078 NOM1Q5C9Z4 860 aaKnown RBP8.04□□□□□ -1.12
USP47-204ENST00000525078 UBXN4Q92575 508 aa8.04□□□□□ -1.12
USP47-204ENST00000525078 CDCA7LQ96GN5 454 aa8.04□□□□□ -1.12
USP47-204ENST00000525078 BCL11AQ9H165 835 aa8.04□□□□□ -1.12
USP47-204ENST00000525078 SERPINB4P48594 390 aa8.03□□□□□ -1.12
USP47-204ENST00000525078 SF3A1Q15459 793 aaKnown RBP8.03□□□□□ -1.12
USP47-204ENST00000525078 EPS8L1Q8TE68 723 aa8.03□□□□□ -1.12
USP47-204ENST00000525078 USP46P62068 366 aa8.01□□□□□ -1.13
USP47-204ENST00000525078 NAALADL2Q58DX5 795 aa8.01□□□□□ -1.13
USP47-204ENST00000525078 KDM4FA0A1W2PPD8 638 aa8□□□□□ -1.13
USP47-204ENST00000525078 VAMP1P23763 118 aa8□□□□□ -1.13
USP47-204ENST00000525078 DNAJB2P25686 324 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms