RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 AK7Q96M32 723 aa12.08□□□□□ -0.48
SKP1-213ENST00000524288 PLA2G2CQ5R387 149 aa12.07□□□□□ -0.48
SKP1-213ENST00000524288 GIGYF2Q6Y7W6 1299 aaKnown RBP12.07□□□□□ -0.48
SKP1-213ENST00000524288 USB1Q9BQ65 265 aaKnown RBP12.07□□□□□ -0.48
SKP1-213ENST00000524288 FCF1Q9Y324 198 aaKnown RBP12.07□□□□□ -0.48
SKP1-213ENST00000524288 PRR20EP86478 221 aa12.06□□□□□ -0.48
SKP1-213ENST00000524288 PRR20CP86479 221 aa12.06□□□□□ -0.48
SKP1-213ENST00000524288 PRR20DP86480 221 aa12.06□□□□□ -0.48
SKP1-213ENST00000524288 PRR20BP86481 221 aa12.06□□□□□ -0.48
SKP1-213ENST00000524288 PRR20AP86496 221 aa12.06□□□□□ -0.48
SKP1-213ENST00000524288 ZNF697Q5TEC3 545 aa12.06□□□□□ -0.48
SKP1-213ENST00000524288 TIMELESSQ9UNS1 1208 aa12.06□□□□□ -0.48
SKP1-213ENST00000524288 TRIM66O15016 1216 aa12.05□□□□□ -0.48
SKP1-213ENST00000524288 MMP16P51512 607 aa12.05□□□□□ -0.48
SKP1-213ENST00000524288 PRDM9Q9NQV7 894 aa12.05□□□□□ -0.48
SKP1-213ENST00000524288 TRIM67Q6ZTA4 783 aa12.03□□□□□ -0.48
SKP1-213ENST00000524288 HLA-CQ95604 372 aa12.03□□□□□ -0.48
SKP1-213ENST00000524288 PARP9Q8IXQ6 854 aa12.02□□□□□ -0.49
SKP1-213ENST00000524288 DXOO77932 396 aaKnown RBP12.01□□□□□ -0.49
SKP1-213ENST00000524288 CD2BP2O95400 341 aaKnown RBP12.01□□□□□ -0.49
SKP1-213ENST00000524288 DIXDC1Q155Q3 683 aa12.01□□□□□ -0.49
SKP1-213ENST00000524288 SPIRE2Q8WWL2 714 aa12□□□□□ -0.49
SKP1-213ENST00000524288 ZBTB24O43167 697 aaPredicted RBP11.99□□□□□ -0.49
SKP1-213ENST00000524288 FDX1P10109 184 aa11.99□□□□□ -0.49
SKP1-213ENST00000524288 GUCA2AQ02747 115 aa11.99□□□□□ -0.49
SKP1-213ENST00000524288 TRAF7Q6Q0C0 670 aa11.99□□□□□ -0.49
SKP1-213ENST00000524288 GDF9O60383 454 aa11.98□□□□□ -0.49
SKP1-213ENST00000524288 RETREG3Q86VR2 466 aa11.98□□□□□ -0.49
SKP1-213ENST00000524288 BEGAINQ9BUH8 593 aa11.98□□□□□ -0.49
SKP1-213ENST00000524288 GJA5P36382 358 aa11.97□□□□□ -0.49
SKP1-213ENST00000524288 JUNDP17535 347 aa11.95□□□□□ -0.5
SKP1-213ENST00000524288 PDE4DQ08499 809 aa11.94□□□□□ -0.5
SKP1-213ENST00000524288 PCDHGC3Q9UN70 934 aa11.94□□□□□ -0.5
SKP1-213ENST00000524288 MOXD2PA6NHM9 499 aa11.93□□□□□ -0.5
SKP1-213ENST00000524288 LCE2BO14633 110 aa11.93□□□□□ -0.5
SKP1-213ENST00000524288 DGAT1O75907 488 aa11.93□□□□□ -0.5
SKP1-213ENST00000524288 PKD2L1Q9P0L9 805 aa11.93□□□□□ -0.5
SKP1-213ENST00000524288 SPDYE5A6NIY4 337 aa11.92□□□□□ -0.5
SKP1-213ENST00000524288 C6orf229H3BNL8 230 aa11.92□□□□□ -0.5
SKP1-213ENST00000524288 MS4A1P11836 297 aa11.92□□□□□ -0.5
SKP1-213ENST00000524288 PKDCCQ504Y2 493 aa11.92□□□□□ -0.5
SKP1-213ENST00000524288 SYMPKQ92797 1274 aaKnown RBP11.92□□□□□ -0.5
SKP1-213ENST00000524288 TNFRSF10AO00220 468 aa11.91□□□□□ -0.5
SKP1-213ENST00000524288 TBC1D2Q9BYX2 928 aa11.91□□□□□ -0.5
SKP1-213ENST00000524288 GPBP1L1Q9HC44 474 aaPredicted RBP11.91□□□□□ -0.5
SKP1-213ENST00000524288 NDUFV2P19404 249 aa11.9□□□□□ -0.5
SKP1-213ENST00000524288 TRIM32Q13049 653 aa11.9□□□□□ -0.5
SKP1-213ENST00000524288 FOXC1Q12948 553 aa11.89□□□□□ -0.51
SKP1-213ENST00000524288 MTMR2Q13614 643 aa11.88□□□□□ -0.51
SKP1-213ENST00000524288 RSBN1LQ6PCB5 846 aaPredicted RBP11.88□□□□□ -0.51
SKP1-213ENST00000524288 DESI1Q6ICB0 168 aa11.87□□□□□ -0.51
SKP1-213ENST00000524288 CCDC24Q8N4L8 307 aa11.87□□□□□ -0.51
SKP1-213ENST00000524288 FAM187AA6NFU0 413 aa11.86□□□□□ -0.51
SKP1-213ENST00000524288 WNT7AO00755 349 aa11.86□□□□□ -0.51
SKP1-213ENST00000524288 SPTLC1O15269 473 aa11.86□□□□□ -0.51
SKP1-213ENST00000524288 NUDT12Q9BQG2 462 aa11.86□□□□□ -0.51
SKP1-213ENST00000524288 PTPRNQ16849 979 aa11.85□□□□□ -0.51
SKP1-213ENST00000524288 TOR4AQ9NXH8 423 aa11.85□□□□□ -0.51
SKP1-213ENST00000524288 WNT7BP56706 349 aa11.84□□□□□ -0.51
SKP1-213ENST00000524288 CYP4X1Q8N118 509 aa11.84□□□□□ -0.51
SKP1-213ENST00000524288 CCNYL3P0C7X3 344 aa11.83□□□□□ -0.52
SKP1-213ENST00000524288 MYT1Q01538 1121 aa11.83□□□□□ -0.52
SKP1-213ENST00000524288 PRPF38BQ5VTL8 546 aaKnown RBP11.83□□□□□ -0.52
SKP1-213ENST00000524288 PRR7Q8TB68 274 aa11.83□□□□□ -0.52
SKP1-213ENST00000524288 TUSC1Q2TAM9 212 aa11.82□□□□□ -0.52
SKP1-213ENST00000524288 RIC3Q7Z5B4 369 aa11.82□□□□□ -0.52
SKP1-213ENST00000524288 C14orf37Q86TY3 774 aa11.82□□□□□ -0.52
SKP1-213ENST00000524288 ZBTB3Q9H5J0 574 aa11.82□□□□□ -0.52
SKP1-213ENST00000524288 KDM4CQ9H3R0 1056 aa11.79□□□□□ -0.52
SKP1-213ENST00000524288 MYSM1Q5VVJ2 828 aa11.78□□□□□ -0.52
SKP1-213ENST00000524288 IL27Q8NEV9 243 aa11.78□□□□□ -0.52
SKP1-213ENST00000524288 SNIP1Q8TAD8 396 aaKnown RBP11.78□□□□□ -0.52
SKP1-213ENST00000524288 RSPH6AQ9H0K4 717 aa11.78□□□□□ -0.52
SKP1-213ENST00000524288 EVA1BQ9NVM1 165 aa11.78□□□□□ -0.52
SKP1-213ENST00000524288 PCDHB15Q9Y5E8 787 aa11.78□□□□□ -0.52
SKP1-213ENST00000524288 TTC24A2A3L6 582 aaPredicted RBP11.77□□□□□ -0.53
SKP1-213ENST00000524288 AVPP01185 164 aa11.77□□□□□ -0.53
SKP1-213ENST00000524288 HRCP23327 699 aa11.77□□□□□ -0.53
SKP1-213ENST00000524288 CRIPAKQ8N1N5 446 aa11.77□□□□□ -0.53
SKP1-213ENST00000524288 MRGPRX2Q96LB1 330 aa11.77□□□□□ -0.53
SKP1-213ENST00000524288 SKOR1P84550 965 aa11.75□□□□□ -0.53
SKP1-213ENST00000524288 KCNH2Q12809 1159 aa11.75□□□□□ -0.53
SKP1-213ENST00000524288 RC3H1Q5TC82 1133 aaKnown RBP11.75□□□□□ -0.53
SKP1-213ENST00000524288 PTCRAQ6ISU1 281 aaPredicted RBP11.75□□□□□ -0.53
SKP1-213ENST00000524288 CTC1Q2NKJ3 1217 aa11.74□□□□□ -0.53
SKP1-213ENST00000524288 LYPD8Q6UX82 237 aa11.74□□□□□ -0.53
SKP1-213ENST00000524288 CFAP99D6REC4 459 aa11.73□□□□□ -0.53
SKP1-213ENST00000524288 UNC93B1Q9H1C4 597 aa11.73□□□□□ -0.53
SKP1-213ENST00000524288 LIMD1Q9UGP4 676 aa11.73□□□□□ -0.53
SKP1-213ENST00000524288 ZNF787Q6DD87 383 aa11.72□□□□□ -0.53
SKP1-213ENST00000524288 AAASQ9NRG9 546 aa11.72□□□□□ -0.53
SKP1-213ENST00000524288 CLK2P49760 499 aaKnown RBP11.71□□□□□ -0.53
SKP1-213ENST00000524288 SMCPP49901 116 aaPredicted RBP11.71□□□□□ -0.53
SKP1-213ENST00000524288 LILRB3O75022 631 aa11.7□□□□□ -0.54
SKP1-213ENST00000524288 SMPD1P17405 629 aa11.7□□□□□ -0.54
SKP1-213ENST00000524288 CABLES1Q8TDN4 633 aa11.7□□□□□ -0.54
SKP1-213ENST00000524288 DDRGK1Q96HY6 314 aa11.7□□□□□ -0.54
SKP1-213ENST00000524288 NUTM2BA6NNL0 878 aaPredicted RBP11.69□□□□□ -0.54
SKP1-213ENST00000524288 NUTM2EB1AL46 878 aaPredicted RBP11.69□□□□□ -0.54
SKP1-213ENST00000524288 CSPP1Q1MSJ5 1256 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms