RNA–Protein interactions for RNA: ENST00000522987.1

MRPS28-209, Transcript of mitochondrial ribosomal protein S28, humanhuman

TSL 3

Gene MRPS28, Length 487 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-209ENST00000522987 UPF1Q92900 1129 aaKnown RBP eCLIP23.02■■□□□ 1.28
MRPS28-209ENST00000522987 XPCQ01831 940 aaPredicted RBP23.01■■□□□ 1.27
MRPS28-209ENST00000522987 CDC42BPGQ6DT37 1551 aa23.01■■□□□ 1.27
MRPS28-209ENST00000522987 PRAG1Q86YV5 1406 aa23■■□□□ 1.27
MRPS28-209ENST00000522987 ESCO1Q5FWF5 840 aa23■■□□□ 1.27
MRPS28-209ENST00000522987 NGLY1Q96IV0 654 aa23■■□□□ 1.27
MRPS28-209ENST00000522987 QTRT2Q9H974 415 aaKnown RBP23■■□□□ 1.27
MRPS28-209ENST00000522987 SOS2Q07890 1332 aaPredicted RBP23■■□□□ 1.27
MRPS28-209ENST00000522987 KNDC1Q76NI1 1749 aa22.99■■□□□ 1.27
MRPS28-209ENST00000522987 RGPD8O14715 1765 aaPredicted RBP22.99■■□□□ 1.27
MRPS28-209ENST00000522987 PLEKHH1Q9ULM0 1364 aa22.99■■□□□ 1.27
MRPS28-209ENST00000522987 RGS12O14924 1447 aa22.97■■□□□ 1.27
MRPS28-209ENST00000522987 MARF1Q9Y4F3 1742 aaKnown RBP22.96■■□□□ 1.27
MRPS28-209ENST00000522987 COL22A1Q8NFW1 1626 aaPredicted RBP22.95■■□□□ 1.26
MRPS28-209ENST00000522987 ANKRD30BQ9BXX2 1392 aa22.95■■□□□ 1.26
MRPS28-209ENST00000522987 FMN2Q9NZ56 1722 aa22.95■■□□□ 1.26
MRPS28-209ENST00000522987 CDK12Q9NYV4 1490 aaPredicted RBP22.94■■□□□ 1.26
MRPS28-209ENST00000522987 LRPPRCP42704 1394 aaKnown RBP22.94■■□□□ 1.26
MRPS28-209ENST00000522987 FOXO3O43524 673 aa22.94■■□□□ 1.26
MRPS28-209ENST00000522987 PIK3C2GO75747 1445 aa22.93■■□□□ 1.26
MRPS28-209ENST00000522987 RBM6P78332 1123 aaKnown RBP22.93■■□□□ 1.26
MRPS28-209ENST00000522987 PXDNQ92626 1479 aa22.92■■□□□ 1.26
MRPS28-209ENST00000522987 TECPR2O15040 1411 aa22.91■■□□□ 1.26
MRPS28-209ENST00000522987 NPHP3Q7Z494 1330 aa22.91■■□□□ 1.26
MRPS28-209ENST00000522987 USP21Q9UK80 565 aa22.91■■□□□ 1.26
MRPS28-209ENST00000522987 YTHDC2Q9H6S0 1430 aaKnown RBP22.91■■□□□ 1.26
MRPS28-209ENST00000522987 PLEKHG5O94827 1062 aa22.89■■□□□ 1.25
MRPS28-209ENST00000522987 ABCC11Q96J66 1382 aa22.89■■□□□ 1.25
MRPS28-209ENST00000522987 SAFB2Q14151 953 aaKnown RBP eCLIP22.88■■□□□ 1.25
MRPS28-209ENST00000522987 CFAP70Q5T0N1 1121 aa22.88■■□□□ 1.25
MRPS28-209ENST00000522987 MYOM2P54296 1465 aa22.87■■□□□ 1.25
MRPS28-209ENST00000522987 RAB3GAP2Q9H2M9 1393 aa22.86■■□□□ 1.25
MRPS28-209ENST00000522987 KIF1AQ12756 1690 aa22.85■■□□□ 1.25
MRPS28-209ENST00000522987 TRPC5Q9UL62 973 aaPredicted RBP22.83■■□□□ 1.25
MRPS28-209ENST00000522987 C14orf93Q9H972 538 aaKnown RBP22.82■■□□□ 1.24
MRPS28-209ENST00000522987 FNBP4Q8N3X1 1017 aaPredicted RBP22.81■■□□□ 1.24
MRPS28-209ENST00000522987 ATRNO75882 1429 aa22.81■■□□□ 1.24
MRPS28-209ENST00000522987 NRXN1Q9ULB1 1477 aa22.8■■□□□ 1.24
MRPS28-209ENST00000522987 DHX57Q6P158 1386 aaKnown RBP22.79■■□□□ 1.24
MRPS28-209ENST00000522987 KRT28Q7Z3Y7 464 aa22.79■■□□□ 1.24
MRPS28-209ENST00000522987 PRAM1Q96QH2 718 aa22.79■■□□□ 1.24
MRPS28-209ENST00000522987 BCL9LQ86UU0 1499 aa22.78■■□□□ 1.24
MRPS28-209ENST00000522987 KDM2AQ9Y2K7 1162 aa22.77■■□□□ 1.24
MRPS28-209ENST00000522987 SPATA31A3Q5VYP0 1347 aa22.77■■□□□ 1.24
MRPS28-209ENST00000522987 USP32Q8NFA0 1604 aa22.76■■□□□ 1.23
MRPS28-209ENST00000522987 PHF8Q9UPP1 1060 aa22.76■■□□□ 1.23
MRPS28-209ENST00000522987 ABCA3Q99758 1704 aa22.75■■□□□ 1.23
MRPS28-209ENST00000522987 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.75■■□□□ 1.23
MRPS28-209ENST00000522987 LMOD2Q6P5Q4 547 aa22.75■■□□□ 1.23
MRPS28-209ENST00000522987 CABLES1Q8TDN4 633 aa22.75■■□□□ 1.23
MRPS28-209ENST00000522987 POGKQ9P215 609 aa22.75■■□□□ 1.23
MRPS28-209ENST00000522987 ATAD2Q6PL18 1390 aa22.75■■□□□ 1.23
MRPS28-209ENST00000522987 BRWD3Q6RI45 1802 aa22.74■■□□□ 1.23
MRPS28-209ENST00000522987 HAP1P54257 671 aaPredicted RBP22.74■■□□□ 1.23
MRPS28-209ENST00000522987 HIRIP3Q9BW71 556 aaPredicted RBP22.74■■□□□ 1.23
MRPS28-209ENST00000522987 PMFBP1Q8TBY8 1022 aa22.73■■□□□ 1.23
MRPS28-209ENST00000522987 TRAK1Q9UPV9 953 aa22.73■■□□□ 1.23
MRPS28-209ENST00000522987 PLCH1Q4KWH8 1693 aa22.73■■□□□ 1.23
MRPS28-209ENST00000522987 SIRT1Q96EB6 747 aa22.71■■□□□ 1.23
MRPS28-209ENST00000522987 TNS3Q68CZ2 1445 aa22.71■■□□□ 1.23
MRPS28-209ENST00000522987 ADGRB1O14514 1584 aa22.71■■□□□ 1.23
MRPS28-209ENST00000522987 GLI3P10071 1580 aa22.71■■□□□ 1.23
MRPS28-209ENST00000522987 DCAF11Q8TEB1 546 aa22.7■■□□□ 1.22
MRPS28-209ENST00000522987 GJD4Q96KN9 370 aaPredicted RBP22.7■■□□□ 1.22
MRPS28-209ENST00000522987 MINK1Q8N4C8 1332 aaPredicted RBP22.7■■□□□ 1.22
MRPS28-209ENST00000522987 DLC1Q96QB1 1528 aa22.7■■□□□ 1.22
MRPS28-209ENST00000522987 ACIN1Q9UKV3 1341 aaKnown RBP22.69■■□□□ 1.22
MRPS28-209ENST00000522987 PSME1Q06323 249 aa22.68■■□□□ 1.22
MRPS28-209ENST00000522987 SLIT2O94813 1529 aa22.67■■□□□ 1.22
MRPS28-209ENST00000522987 RALGAPBQ86X10 1494 aa22.67■■□□□ 1.22
MRPS28-209ENST00000522987 UNC5CLQ8IV45 518 aa22.67■■□□□ 1.22
MRPS28-209ENST00000522987 ADGRB2O60241 1585 aa22.67■■□□□ 1.22
MRPS28-209ENST00000522987 TRPM3Q9HCF6 1732 aaPredicted RBP22.66■■□□□ 1.22
MRPS28-209ENST00000522987 ARHGEF28Q8N1W1 1705 aaKnown RBP22.65■■□□□ 1.22
MRPS28-209ENST00000522987 NWD2Q9ULI1 1742 aa22.63■■□□□ 1.21
MRPS28-209ENST00000522987 CCDC9Q9Y3X0 531 aaKnown RBP22.63■■□□□ 1.21
MRPS28-209ENST00000522987 PRR36Q9H6K5 1346 aa22.62■■□□□ 1.21
MRPS28-209ENST00000522987 ANKARQ7Z5J8 1434 aa22.62■■□□□ 1.21
MRPS28-209ENST00000522987 EP400Q96L91 3159 aa22.62■■□□□ 1.21
MRPS28-209ENST00000522987 SBNO1A3KN83 1393 aa22.62■■□□□ 1.21
MRPS28-209ENST00000522987 ALS2Q96Q42 1657 aa22.61■■□□□ 1.21
MRPS28-209ENST00000522987 TULP4Q9NRJ4 1543 aa22.59■■□□□ 1.21
MRPS28-209ENST00000522987 ARHGEF10O15013 1369 aa22.59■■□□□ 1.21
MRPS28-209ENST00000522987 NRAPQ86VF7 1730 aa22.58■■□□□ 1.21
MRPS28-209ENST00000522987 ITSN1Q15811 1721 aa22.57■■□□□ 1.2
MRPS28-209ENST00000522987 FAM83GA6ND36 823 aa22.56■■□□□ 1.2
MRPS28-209ENST00000522987 WASLO00401 505 aaPredicted RBP22.56■■□□□ 1.2
MRPS28-209ENST00000522987 SEPT12Q8IYM1 358 aa22.56■■□□□ 1.2
MRPS28-209ENST00000522987 CRYBG1Q9Y4K1 1723 aa22.56■■□□□ 1.2
MRPS28-209ENST00000522987 GPRASP1Q5JY77 1395 aa22.55■■□□□ 1.2
MRPS28-209ENST00000522987 A0A0G2JS52 829 aa22.55■■□□□ 1.2
MRPS28-209ENST00000522987 PAK3O75914 559 aaPredicted RBP22.55■■□□□ 1.2
MRPS28-209ENST00000522987 MYT1Q01538 1121 aa22.55■■□□□ 1.2
MRPS28-209ENST00000522987 VPS72Q15906 364 aa22.54■■□□□ 1.2
MRPS28-209ENST00000522987 NGDNQ8NEJ9 315 aaKnown RBP22.54■■□□□ 1.2
MRPS28-209ENST00000522987 COL14A1Q05707 1796 aaKnown RBP22.53■■□□□ 1.2
MRPS28-209ENST00000522987 EIF3AQ14152 1382 aaKnown RBP22.51■■□□□ 1.19
MRPS28-209ENST00000522987 DEFB132Q7Z7B7 95 aa22.51■■□□□ 1.19
MRPS28-209ENST00000522987 BTG4Q9NY30 223 aa22.51■■□□□ 1.19
MRPS28-209ENST00000522987 ZRANB1Q9UGI0 708 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms