RNA–Protein interactions for RNA: ENST00000522466.1

PDGFRB-210, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 3

Gene PDGFRB, Length 296 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-210ENST00000522466 BCL9LQ86UU0 1499 aa12.36□□□□□ -0.43
PDGFRB-210ENST00000522466 EP400Q96L91 3159 aa12.36□□□□□ -0.43
PDGFRB-210ENST00000522466 CCDC125Q86Z20 511 aa12.36□□□□□ -0.43
PDGFRB-210ENST00000522466 GJD4Q96KN9 370 aaPredicted RBP12.36□□□□□ -0.43
PDGFRB-210ENST00000522466 BRWD3Q6RI45 1802 aa12.36□□□□□ -0.43
PDGFRB-210ENST00000522466 ROBO2Q9HCK4 1378 aa12.35□□□□□ -0.43
PDGFRB-210ENST00000522466 PLEKHG5O94827 1062 aa12.35□□□□□ -0.43
PDGFRB-210ENST00000522466 COL22A1Q8NFW1 1626 aaPredicted RBP12.35□□□□□ -0.43
PDGFRB-210ENST00000522466 NEXMIFQ5QGS0 1516 aa12.34□□□□□ -0.43
PDGFRB-210ENST00000522466 NUTM2FA1L443 756 aa12.34□□□□□ -0.43
PDGFRB-210ENST00000522466 PSDA5PKW4 1024 aaPredicted RBP12.34□□□□□ -0.43
PDGFRB-210ENST00000522466 ESCO1Q5FWF5 840 aa12.34□□□□□ -0.43
PDGFRB-210ENST00000522466 MYOM2P54296 1465 aa12.34□□□□□ -0.43
PDGFRB-210ENST00000522466 GLI3P10071 1580 aa12.32□□□□□ -0.44
PDGFRB-210ENST00000522466 BLMP54132 1417 aaPredicted RBP12.32□□□□□ -0.44
PDGFRB-210ENST00000522466 SF3B2Q13435 895 aaKnown RBP12.32□□□□□ -0.44
PDGFRB-210ENST00000522466 CLTCL1P53675 1640 aa12.32□□□□□ -0.44
PDGFRB-210ENST00000522466 RALGAPBQ86X10 1494 aa12.32□□□□□ -0.44
PDGFRB-210ENST00000522466 FOXO3O43524 673 aa12.31□□□□□ -0.44
PDGFRB-210ENST00000522466 KIF1BO60333 1816 aa12.31□□□□□ -0.44
PDGFRB-210ENST00000522466 UNC5CLQ8IV45 518 aa12.3□□□□□ -0.44
PDGFRB-210ENST00000522466 NPHP3Q7Z494 1330 aa12.3□□□□□ -0.44
PDGFRB-210ENST00000522466 PXDNQ92626 1479 aa12.29□□□□□ -0.44
PDGFRB-210ENST00000522466 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.29□□□□□ -0.44
PDGFRB-210ENST00000522466 SEPT12Q8IYM1 358 aa12.29□□□□□ -0.44
PDGFRB-210ENST00000522466 CCDC9Q9Y3X0 531 aaKnown RBP12.29□□□□□ -0.44
PDGFRB-210ENST00000522466 LRP5O75197 1615 aa12.29□□□□□ -0.44
PDGFRB-210ENST00000522466 ROCK1Q13464 1354 aa12.29□□□□□ -0.44
PDGFRB-210ENST00000522466 A0A0G2JS52 829 aa12.26□□□□□ -0.45
PDGFRB-210ENST00000522466 MYT1Q01538 1121 aa12.26□□□□□ -0.45
PDGFRB-210ENST00000522466 SLIT2O94813 1529 aa12.26□□□□□ -0.45
PDGFRB-210ENST00000522466 HRCP23327 699 aa12.25□□□□□ -0.45
PDGFRB-210ENST00000522466 HAP1P54257 671 aaPredicted RBP12.25□□□□□ -0.45
PDGFRB-210ENST00000522466 WAPLQ7Z5K2 1190 aa12.25□□□□□ -0.45
PDGFRB-210ENST00000522466 CABLES1Q8TDN4 633 aa12.25□□□□□ -0.45
PDGFRB-210ENST00000522466 STK26Q9P289 416 aa12.25□□□□□ -0.45
PDGFRB-210ENST00000522466 HFM1A2PYH4 1435 aa12.25□□□□□ -0.45
PDGFRB-210ENST00000522466 VGFO15240 615 aaPredicted RBP12.24□□□□□ -0.45
PDGFRB-210ENST00000522466 KRT27Q7Z3Y8 459 aa12.24□□□□□ -0.45
PDGFRB-210ENST00000522466 PPARGC1BQ86YN6 1023 aaKnown RBP12.24□□□□□ -0.45
PDGFRB-210ENST00000522466 USP32Q8NFA0 1604 aa12.23□□□□□ -0.45
PDGFRB-210ENST00000522466 CDC42BPGQ6DT37 1551 aa12.23□□□□□ -0.45
PDGFRB-210ENST00000522466 NAIPQ13075 1403 aa12.23□□□□□ -0.45
PDGFRB-210ENST00000522466 PLCH1Q4KWH8 1693 aa12.22□□□□□ -0.45
PDGFRB-210ENST00000522466 SPATA31A3Q5VYP0 1347 aa12.22□□□□□ -0.45
PDGFRB-210ENST00000522466 BAG6P46379 1132 aa12.22□□□□□ -0.45
PDGFRB-210ENST00000522466 EN1Q05925 392 aaPredicted RBP12.22□□□□□ -0.45
PDGFRB-210ENST00000522466 VPS72Q15906 364 aa12.22□□□□□ -0.45
PDGFRB-210ENST00000522466 FAM182BQ5T319 152 aa12.22□□□□□ -0.45
PDGFRB-210ENST00000522466 LMOD2Q6P5Q4 547 aa12.22□□□□□ -0.45
PDGFRB-210ENST00000522466 KRT28Q7Z3Y7 464 aa12.22□□□□□ -0.45
PDGFRB-210ENST00000522466 LRPPRCP42704 1394 aaKnown RBP12.21□□□□□ -0.45
PDGFRB-210ENST00000522466 RGPD8O14715 1765 aaPredicted RBP12.21□□□□□ -0.45
PDGFRB-210ENST00000522466 PPLO60437 1756 aa12.21□□□□□ -0.45
PDGFRB-210ENST00000522466 R3HDM1Q15032 1099 aaKnown RBP12.21□□□□□ -0.45
PDGFRB-210ENST00000522466 PLEKHH1Q9ULM0 1364 aa12.2□□□□□ -0.46
PDGFRB-210ENST00000522466 FAM98CQ17RN3 349 aaKnown RBP12.19□□□□□ -0.46
PDGFRB-210ENST00000522466 PRAG1Q86YV5 1406 aa12.19□□□□□ -0.46
PDGFRB-210ENST00000522466 FMN2Q9NZ56 1722 aa12.18□□□□□ -0.46
PDGFRB-210ENST00000522466 TMEM132EQ6IEE7 984 aa12.18□□□□□ -0.46
PDGFRB-210ENST00000522466 NWD2Q9ULI1 1742 aa12.17□□□□□ -0.46
PDGFRB-210ENST00000522466 ADGRF5Q8IZF2 1346 aa12.17□□□□□ -0.46
PDGFRB-210ENST00000522466 DCAF8L1A6NGE4 600 aa12.17□□□□□ -0.46
PDGFRB-210ENST00000522466 ABCA3Q99758 1704 aa12.17□□□□□ -0.46
PDGFRB-210ENST00000522466 KIF1AQ12756 1690 aa12.16□□□□□ -0.46
PDGFRB-210ENST00000522466 RPGRIP1LQ68CZ1 1315 aa12.16□□□□□ -0.46
PDGFRB-210ENST00000522466 FAM83GA6ND36 823 aa12.16□□□□□ -0.46
PDGFRB-210ENST00000522466 ONECUT3O60422 494 aaPredicted RBP12.16□□□□□ -0.46
PDGFRB-210ENST00000522466 EZH2Q15910 746 aaKnown RBP12.16□□□□□ -0.46
PDGFRB-210ENST00000522466 CCDC144AA2RUR9 1427 aa12.16□□□□□ -0.46
PDGFRB-210ENST00000522466 TNS3Q68CZ2 1445 aa12.16□□□□□ -0.46
PDGFRB-210ENST00000522466 RGPD1P0DJD0 1748 aa12.15□□□□□ -0.46
PDGFRB-210ENST00000522466 YY1P25490 414 aa12.15□□□□□ -0.46
PDGFRB-210ENST00000522466 RGL3Q3MIN7 710 aa12.15□□□□□ -0.46
PDGFRB-210ENST00000522466 PHF8Q9UPP1 1060 aa12.15□□□□□ -0.46
PDGFRB-210ENST00000522466 IFT172Q9UG01 1749 aa12.14□□□□□ -0.47
PDGFRB-210ENST00000522466 NRAPQ86VF7 1730 aa12.14□□□□□ -0.47
PDGFRB-210ENST00000522466 PSME1Q06323 249 aa12.13□□□□□ -0.47
PDGFRB-210ENST00000522466 SAFB2Q14151 953 aaKnown RBP eCLIP12.13□□□□□ -0.47
PDGFRB-210ENST00000522466 RNF39Q9H2S5 420 aa12.13□□□□□ -0.47
PDGFRB-210ENST00000522466 BTG4Q9NY30 223 aa12.13□□□□□ -0.47
PDGFRB-210ENST00000522466 TNS1Q9HBL0 1735 aaKnown RBP12.12□□□□□ -0.47
PDGFRB-210ENST00000522466 PMFBP1Q8TBY8 1022 aa12.12□□□□□ -0.47
PDGFRB-210ENST00000522466 KNDC1Q76NI1 1749 aa12.11□□□□□ -0.47
PDGFRB-210ENST00000522466 HOXD11P31277 338 aaPredicted RBP12.11□□□□□ -0.47
PDGFRB-210ENST00000522466 SLC4A1APQ9BWU0 796 aaKnown RBP12.11□□□□□ -0.47
PDGFRB-210ENST00000522466 TECPR2O15040 1411 aa12.11□□□□□ -0.47
PDGFRB-210ENST00000522466 RRBP1Q9P2E9 1410 aaKnown RBP12.11□□□□□ -0.47
PDGFRB-210ENST00000522466 ABCC11Q96J66 1382 aa12.1□□□□□ -0.47
PDGFRB-210ENST00000522466 TRIM37O94972 964 aa12.1□□□□□ -0.47
PDGFRB-210ENST00000522466 SBNO1A3KN83 1393 aa12.09□□□□□ -0.47
PDGFRB-210ENST00000522466 YTHDC2Q9H6S0 1430 aaKnown RBP12.09□□□□□ -0.47
PDGFRB-210ENST00000522466 ARHGEF10O15013 1369 aa12.08□□□□□ -0.48
PDGFRB-210ENST00000522466 NRXN1Q9ULB1 1477 aa12.08□□□□□ -0.48
PDGFRB-210ENST00000522466 COL14A1Q05707 1796 aaKnown RBP12.07□□□□□ -0.48
PDGFRB-210ENST00000522466 APBA3O96018 575 aa12.07□□□□□ -0.48
PDGFRB-210ENST00000522466 PPP4R3CPQ6ZMV5 832 aa12.07□□□□□ -0.48
PDGFRB-210ENST00000522466 CAMKK2Q96RR4 588 aa12.07□□□□□ -0.48
PDGFRB-210ENST00000522466 SPATA31A5Q5VU36 1347 aa12.07□□□□□ -0.48
PDGFRB-210ENST00000522466 SPATA31A7Q8IWB4 1347 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms