RNA–Protein interactions for RNA: ENST00000520948.5

VEGFA-222, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best) BASIC

Gene VEGFA, Length 1,199 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-222ENST00000520948 SIN3AQ96ST3 1273 aa26.39■■□□□ 1.82
VEGFA-222ENST00000520948 LAMC1P11047 1609 aa26.38■■□□□ 1.81
VEGFA-222ENST00000520948 ORAI2Q96SN7 254 aa26.37■■□□□ 1.81
VEGFA-222ENST00000520948 PRAG1Q86YV5 1406 aa26.36■■□□□ 1.81
VEGFA-222ENST00000520948 CDK12Q9NYV4 1490 aaPredicted RBP26.36■■□□□ 1.81
VEGFA-222ENST00000520948 ADAMTS2O95450 1211 aa26.33■■□□□ 1.81
VEGFA-222ENST00000520948 RGS12O14924 1447 aa26.31■■□□□ 1.8
VEGFA-222ENST00000520948 SOS2Q07890 1332 aaPredicted RBP26.3■■□□□ 1.8
VEGFA-222ENST00000520948 ADGRF5Q8IZF2 1346 aa26.3■■□□□ 1.8
VEGFA-222ENST00000520948 STAC3Q96MF2 364 aa26.29■■□□□ 1.8
VEGFA-222ENST00000520948 QTRT2Q9H974 415 aaKnown RBP26.29■■□□□ 1.8
VEGFA-222ENST00000520948 CLSPNQ9HAW4 1339 aa26.29■■□□□ 1.8
VEGFA-222ENST00000520948 CDC42BPGQ6DT37 1551 aa26.29■■□□□ 1.8
VEGFA-222ENST00000520948 NEUROD1Q13562 356 aa26.28■■□□□ 1.8
VEGFA-222ENST00000520948 NGLY1Q96IV0 654 aa26.28■■□□□ 1.8
VEGFA-222ENST00000520948 MYOM2P54296 1465 aa26.28■■□□□ 1.8
VEGFA-222ENST00000520948 NRXN1Q9ULB1 1477 aa26.28■■□□□ 1.8
VEGFA-222ENST00000520948 DCAF11Q8TEB1 546 aa26.26■■□□□ 1.79
VEGFA-222ENST00000520948 RBM6P78332 1123 aaKnown RBP26.25■■□□□ 1.79
VEGFA-222ENST00000520948 STK26Q9P289 416 aa26.24■■□□□ 1.79
VEGFA-222ENST00000520948 COL22A1Q8NFW1 1626 aaPredicted RBP26.24■■□□□ 1.79
VEGFA-222ENST00000520948 PIK3C2GO75747 1445 aa26.22■■□□□ 1.79
VEGFA-222ENST00000520948 ESCO1Q5FWF5 840 aa26.22■■□□□ 1.79
VEGFA-222ENST00000520948 L3MBTL2Q969R5 705 aa26.22■■□□□ 1.79
VEGFA-222ENST00000520948 KDM2AQ9Y2K7 1162 aa26.21■■□□□ 1.79
VEGFA-222ENST00000520948 KNDC1Q76NI1 1749 aa26.2■■□□□ 1.79
VEGFA-222ENST00000520948 NUTM2FA1L443 756 aa26.2■■□□□ 1.78
VEGFA-222ENST00000520948 WAPLQ7Z5K2 1190 aa26.2■■□□□ 1.78
VEGFA-222ENST00000520948 PXDNQ92626 1479 aa26.19■■□□□ 1.78
VEGFA-222ENST00000520948 XPCQ01831 940 aaPredicted RBP26.19■■□□□ 1.78
VEGFA-222ENST00000520948 USP21Q9UK80 565 aa26.19■■□□□ 1.78
VEGFA-222ENST00000520948 NPHP3Q7Z494 1330 aa26.18■■□□□ 1.78
VEGFA-222ENST00000520948 TECPR2O15040 1411 aa26.18■■□□□ 1.78
VEGFA-222ENST00000520948 TMEM132EQ6IEE7 984 aa26.18■■□□□ 1.78
VEGFA-222ENST00000520948 CCER1Q8TC90 406 aaPredicted RBP26.18■■□□□ 1.78
VEGFA-222ENST00000520948 LRPPRCP42704 1394 aaKnown RBP26.18■■□□□ 1.78
VEGFA-222ENST00000520948 C14orf93Q9H972 538 aaKnown RBP26.17■■□□□ 1.78
VEGFA-222ENST00000520948 PLEKHH1Q9ULM0 1364 aa26.17■■□□□ 1.78
VEGFA-222ENST00000520948 MARF1Q9Y4F3 1742 aaKnown RBP26.16■■□□□ 1.78
VEGFA-222ENST00000520948 FMN2Q9NZ56 1722 aa26.15■■□□□ 1.78
VEGFA-222ENST00000520948 FOXO3O43524 673 aa26.15■■□□□ 1.78
VEGFA-222ENST00000520948 TRPC5Q9UL62 973 aaPredicted RBP26.13■■□□□ 1.77
VEGFA-222ENST00000520948 ABCC11Q96J66 1382 aa26.12■■□□□ 1.77
VEGFA-222ENST00000520948 CFAP70Q5T0N1 1121 aa26.12■■□□□ 1.77
VEGFA-222ENST00000520948 FNBP4Q8N3X1 1017 aaPredicted RBP26.12■■□□□ 1.77
VEGFA-222ENST00000520948 ATRNO75882 1429 aa26.11■■□□□ 1.77
VEGFA-222ENST00000520948 YTHDC2Q9H6S0 1430 aaKnown RBP26.11■■□□□ 1.77
VEGFA-222ENST00000520948 TONSLQ96HA7 1378 aa26.09■■□□□ 1.77
VEGFA-222ENST00000520948 KIF1AQ12756 1690 aa26.09■■□□□ 1.77
VEGFA-222ENST00000520948 TIMELESSQ9UNS1 1208 aa26.08■■□□□ 1.77
VEGFA-222ENST00000520948 ATAD2Q6PL18 1390 aa26.07■■□□□ 1.76
VEGFA-222ENST00000520948 RGPD8O14715 1765 aaPredicted RBP26.07■■□□□ 1.76
VEGFA-222ENST00000520948 BCL9LQ86UU0 1499 aa26.06■■□□□ 1.76
VEGFA-222ENST00000520948 KIAA1210Q9ULL0 1709 aa26.05■■□□□ 1.76
VEGFA-222ENST00000520948 ADGRB1O14514 1584 aa26.03■■□□□ 1.76
VEGFA-222ENST00000520948 NBPF8Q3BBV2 869 aa26.02■■□□□ 1.76
VEGFA-222ENST00000520948 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.01■■□□□ 1.75
VEGFA-222ENST00000520948 SPATA31A3Q5VYP0 1347 aa26■■□□□ 1.75
VEGFA-222ENST00000520948 USP32Q8NFA0 1604 aa25.99■■□□□ 1.75
VEGFA-222ENST00000520948 SAFB2Q14151 953 aaKnown RBP eCLIP25.98■■□□□ 1.75
VEGFA-222ENST00000520948 KRT28Q7Z3Y7 464 aa25.98■■□□□ 1.75
VEGFA-222ENST00000520948 TRPM1Q7Z4N2 1603 aa25.98■■□□□ 1.75
VEGFA-222ENST00000520948 PLEKHG5O94827 1062 aa25.97■■□□□ 1.75
VEGFA-222ENST00000520948 NBPF1Q3BBV0 1214 aa25.97■■□□□ 1.75
VEGFA-222ENST00000520948 SIRT1Q96EB6 747 aa25.96■■□□□ 1.75
VEGFA-222ENST00000520948 GJD4Q96KN9 370 aaPredicted RBP25.96■■□□□ 1.75
VEGFA-222ENST00000520948 GLI3P10071 1580 aa25.95■■□□□ 1.75
VEGFA-222ENST00000520948 PRAM1Q96QH2 718 aa25.95■■□□□ 1.74
VEGFA-222ENST00000520948 PHF8Q9UPP1 1060 aa25.95■■□□□ 1.74
VEGFA-222ENST00000520948 SLIT2O94813 1529 aa25.94■■□□□ 1.74
VEGFA-222ENST00000520948 TNS3Q68CZ2 1445 aa25.94■■□□□ 1.74
VEGFA-222ENST00000520948 ABCA3Q99758 1704 aa25.93■■□□□ 1.74
VEGFA-222ENST00000520948 RALGAPBQ86X10 1494 aa25.92■■□□□ 1.74
VEGFA-222ENST00000520948 EP400Q96L91 3159 aa25.92■■□□□ 1.74
VEGFA-222ENST00000520948 UNC5CLQ8IV45 518 aa25.92■■□□□ 1.74
VEGFA-222ENST00000520948 CABLES1Q8TDN4 633 aa25.92■■□□□ 1.74
VEGFA-222ENST00000520948 PLCH1Q4KWH8 1693 aa25.91■■□□□ 1.74
VEGFA-222ENST00000520948 HAP1P54257 671 aaPredicted RBP25.91■■□□□ 1.74
VEGFA-222ENST00000520948 DLC1Q96QB1 1528 aa25.91■■□□□ 1.74
VEGFA-222ENST00000520948 BRWD3Q6RI45 1802 aa25.89■■□□□ 1.74
VEGFA-222ENST00000520948 LMOD2Q6P5Q4 547 aa25.89■■□□□ 1.74
VEGFA-222ENST00000520948 POGKQ9P215 609 aa25.89■■□□□ 1.74
VEGFA-222ENST00000520948 GPRASP1Q5JY77 1395 aa25.88■■□□□ 1.73
VEGFA-222ENST00000520948 PSME1Q06323 249 aa25.88■■□□□ 1.73
VEGFA-222ENST00000520948 ADGRB2O60241 1585 aa25.87■■□□□ 1.73
VEGFA-222ENST00000520948 TRAK1Q9UPV9 953 aa25.87■■□□□ 1.73
VEGFA-222ENST00000520948 PMFBP1Q8TBY8 1022 aa25.86■■□□□ 1.73
VEGFA-222ENST00000520948 SBNO1A3KN83 1393 aa25.85■■□□□ 1.73
VEGFA-222ENST00000520948 NWD2Q9ULI1 1742 aa25.85■■□□□ 1.73
VEGFA-222ENST00000520948 ANKARQ7Z5J8 1434 aa25.84■■□□□ 1.73
VEGFA-222ENST00000520948 HIRIP3Q9BW71 556 aaPredicted RBP25.84■■□□□ 1.73
VEGFA-222ENST00000520948 ROCK2O75116 1388 aaKnown RBP25.83■■□□□ 1.73
VEGFA-222ENST00000520948 ARHGEF28Q8N1W1 1705 aaKnown RBP25.83■■□□□ 1.73
VEGFA-222ENST00000520948 TRPM3Q9HCF6 1732 aaPredicted RBP25.83■■□□□ 1.72
VEGFA-222ENST00000520948 ARHGEF10O15013 1369 aa25.82■■□□□ 1.72
VEGFA-222ENST00000520948 ZRANB1Q9UGI0 708 aa25.82■■□□□ 1.72
VEGFA-222ENST00000520948 CCDC125Q86Z20 511 aa25.81■■□□□ 1.72
VEGFA-222ENST00000520948 CCDC9Q9Y3X0 531 aaKnown RBP25.81■■□□□ 1.72
VEGFA-222ENST00000520948 MINK1Q8N4C8 1332 aaPredicted RBP25.81■■□□□ 1.72
VEGFA-222ENST00000520948 VPS72Q15906 364 aa25.79■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms