RNA–Protein interactions for RNA: ENST00000520234.1

HMGB1P41-201, Transcript of high mobility group box 1 pseudogene 41, humanhuman

BASIC

Gene HMGB1P41, Length 440 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P41-201ENST00000520234 XP32Q5T750 250 aa7.64□□□□□ -1.19
HMGB1P41-201ENST00000520234 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.64□□□□□ -1.19
HMGB1P41-201ENST00000520234 J3QL48 77 aa7.62□□□□□ -1.19
HMGB1P41-201ENST00000520234 ZBTB24O43167 697 aaPredicted RBP7.62□□□□□ -1.19
HMGB1P41-201ENST00000520234 GDF11O95390 407 aa7.62□□□□□ -1.19
HMGB1P41-201ENST00000520234 MLLT3P42568 568 aaPredicted RBP7.62□□□□□ -1.19
HMGB1P41-201ENST00000520234 VEGFBP49765 207 aa7.62□□□□□ -1.19
HMGB1P41-201ENST00000520234 HPS1Q92902 700 aa7.62□□□□□ -1.19
HMGB1P41-201ENST00000520234 KRTAP4-8Q9BYQ9 185 aa7.6□□□□□ -1.19
HMGB1P41-201ENST00000520234 RNF225M0QZC1 329 aaPredicted RBP7.59□□□□□ -1.19
HMGB1P41-201ENST00000520234 RASSF7Q02833 373 aa7.59□□□□□ -1.19
HMGB1P41-201ENST00000520234 MRGPRX2Q96LB1 330 aa7.59□□□□□ -1.19
HMGB1P41-201ENST00000520234 SLC10A3P09131 477 aa7.58□□□□□ -1.2
HMGB1P41-201ENST00000520234 RBM46Q8TBY0 533 aaKnown RBP7.58□□□□□ -1.2
HMGB1P41-201ENST00000520234 REPIN1Q9BWE0 567 aaKnown RBP7.58□□□□□ -1.2
HMGB1P41-201ENST00000520234 TPRNQ4KMQ1 711 aa7.57□□□□□ -1.2
HMGB1P41-201ENST00000520234 IGHA1P01876 353 aa7.56□□□□□ -1.2
HMGB1P41-201ENST00000520234 VSIG8P0DPA2 414 aa7.56□□□□□ -1.2
HMGB1P41-201ENST00000520234 PUS10Q3MIT2 529 aaKnown RBP7.56□□□□□ -1.2
HMGB1P41-201ENST00000520234 TRIM32Q13049 653 aa7.54□□□□□ -1.2
HMGB1P41-201ENST00000520234 RBM26Q5T8P6 1007 aaKnown RBP7.54□□□□□ -1.2
HMGB1P41-201ENST00000520234 RCCD1A6NED2 376 aa7.53□□□□□ -1.2
HMGB1P41-201ENST00000520234 GPIHBP1Q8IV16 184 aa7.53□□□□□ -1.2
HMGB1P41-201ENST00000520234 THAP11Q96EK4 314 aa7.53□□□□□ -1.2
HMGB1P41-201ENST00000520234 TRIM46Q7Z4K8 759 aa7.52□□□□□ -1.21
HMGB1P41-201ENST00000520234 FAM160A2Q8N612 972 aaPredicted RBP7.52□□□□□ -1.21
HMGB1P41-201ENST00000520234 ZC3H15Q8WU90 426 aaKnown RBP7.52□□□□□ -1.21
HMGB1P41-201ENST00000520234 FMNL1O95466 1100 aaPredicted RBP7.51□□□□□ -1.21
HMGB1P41-201ENST00000520234 BMP1P13497 986 aa7.51□□□□□ -1.21
HMGB1P41-201ENST00000520234 RSPH4AQ5TD94 716 aa7.51□□□□□ -1.21
HMGB1P41-201ENST00000520234 ADGRG1Q9Y653 693 aa7.51□□□□□ -1.21
HMGB1P41-201ENST00000520234 NUTM2FA1L443 756 aa7.5□□□□□ -1.21
HMGB1P41-201ENST00000520234 PRKCSHP14314 528 aaPredicted RBP7.5□□□□□ -1.21
HMGB1P41-201ENST00000520234 DNMT3AQ9Y6K1 912 aaPredicted RBP7.5□□□□□ -1.21
HMGB1P41-201ENST00000520234 GPAT2Q6NUI2 795 aa7.49□□□□□ -1.21
HMGB1P41-201ENST00000520234 PRDM9Q9NQV7 894 aa7.49□□□□□ -1.21
HMGB1P41-201ENST00000520234 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.48□□□□□ -1.21
HMGB1P41-201ENST00000520234 ZMYND10O75800 440 aa7.48□□□□□ -1.21
HMGB1P41-201ENST00000520234 FCHSD2O94868 740 aa7.48□□□□□ -1.21
HMGB1P41-201ENST00000520234 MSS51Q4VC12 460 aa7.48□□□□□ -1.21
HMGB1P41-201ENST00000520234 MORN1Q5T089 497 aa7.48□□□□□ -1.21
HMGB1P41-201ENST00000520234 SALL2Q9Y467 1007 aaPredicted RBP7.48□□□□□ -1.21
HMGB1P41-201ENST00000520234 FOXK2Q01167 660 aa7.47□□□□□ -1.21
HMGB1P41-201ENST00000520234 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.46□□□□□ -1.22
HMGB1P41-201ENST00000520234 CAPN5O15484 640 aaPredicted RBP7.46□□□□□ -1.22
HMGB1P41-201ENST00000520234 HIC1Q14526 733 aa7.46□□□□□ -1.22
HMGB1P41-201ENST00000520234 GPR37O15354 613 aa7.45□□□□□ -1.22
HMGB1P41-201ENST00000520234 PTGDRQ13258 359 aa7.45□□□□□ -1.22
HMGB1P41-201ENST00000520234 BARGINQ6ZT62 677 aa7.45□□□□□ -1.22
HMGB1P41-201ENST00000520234 KRTAP9-2Q9BYQ4 174 aa7.45□□□□□ -1.22
HMGB1P41-201ENST00000520234 ALDH1A1P00352 501 aa7.44□□□□□ -1.22
HMGB1P41-201ENST00000520234 RC3H1Q5TC82 1133 aaKnown RBP7.44□□□□□ -1.22
HMGB1P41-201ENST00000520234 PSMG3-AS1Q96PY0 264 aa7.44□□□□□ -1.22
HMGB1P41-201ENST00000520234 GNPATO15228 680 aa7.43□□□□□ -1.22
HMGB1P41-201ENST00000520234 WNT7BP56706 349 aa7.43□□□□□ -1.22
HMGB1P41-201ENST00000520234 ADAMTS8Q9UP79 889 aa7.43□□□□□ -1.22
HMGB1P41-201ENST00000520234 ATP6V1AP38606 617 aa7.42□□□□□ -1.22
HMGB1P41-201ENST00000520234 BRICD5Q6PL45 260 aa7.42□□□□□ -1.22
HMGB1P41-201ENST00000520234 KRI1Q8N9T8 703 aaKnown RBP7.42□□□□□ -1.22
HMGB1P41-201ENST00000520234 ZFP42Q96MM3 310 aa7.42□□□□□ -1.22
HMGB1P41-201ENST00000520234 SLC27A5Q9Y2P5 690 aa7.42□□□□□ -1.22
HMGB1P41-201ENST00000520234 KRTAP9-6A0A140TA67 174 aa7.41□□□□□ -1.22
HMGB1P41-201ENST00000520234 FECHP22830 423 aa7.4□□□□□ -1.22
HMGB1P41-201ENST00000520234 FUT2Q10981 343 aa7.4□□□□□ -1.22
HMGB1P41-201ENST00000520234 MINK1Q8N4C8 1332 aaPredicted RBP7.4□□□□□ -1.22
HMGB1P41-201ENST00000520234 ADAM23O75077 832 aa7.39□□□□□ -1.23
HMGB1P41-201ENST00000520234 MMP16P51512 607 aa7.39□□□□□ -1.23
HMGB1P41-201ENST00000520234 MAP2K5Q13163 448 aa7.39□□□□□ -1.23
HMGB1P41-201ENST00000520234 AK7Q96M32 723 aa7.39□□□□□ -1.23
HMGB1P41-201ENST00000520234 SKOR1P84550 965 aa7.38□□□□□ -1.23
HMGB1P41-201ENST00000520234 FAM161AQ3B820 660 aa7.38□□□□□ -1.23
HMGB1P41-201ENST00000520234 KANK3Q6NY19 840 aa7.38□□□□□ -1.23
HMGB1P41-201ENST00000520234 WASF2Q9Y6W5 498 aa7.38□□□□□ -1.23
HMGB1P41-201ENST00000520234 IRF6O14896 467 aa7.37□□□□□ -1.23
HMGB1P41-201ENST00000520234 SLC24A3Q9HC58 644 aa7.37□□□□□ -1.23
HMGB1P41-201ENST00000520234 KRTAP1-3Q8IUG1 177 aa7.36□□□□□ -1.23
HMGB1P41-201ENST00000520234 IRS1P35568 1242 aa7.35□□□□□ -1.23
HMGB1P41-201ENST00000520234 RNF19BQ6ZMZ0 732 aa7.35□□□□□ -1.23
HMGB1P41-201ENST00000520234 PXYLP1Q8TE99 480 aa7.35□□□□□ -1.23
HMGB1P41-201ENST00000520234 OATP04181 439 aa7.34□□□□□ -1.23
HMGB1P41-201ENST00000520234 SCARF1Q14162 830 aa7.34□□□□□ -1.23
HMGB1P41-201ENST00000520234 RDH13Q8NBN7 331 aa7.34□□□□□ -1.23
HMGB1P41-201ENST00000520234 SIAH2O43255 324 aa7.33□□□□□ -1.24
HMGB1P41-201ENST00000520234 MRPL14Q6P1L8 145 aaKnown RBP7.33□□□□□ -1.24
HMGB1P41-201ENST00000520234 DXOO77932 396 aaKnown RBP7.32□□□□□ -1.24
HMGB1P41-201ENST00000520234 CCDC102AQ96A19 550 aa7.32□□□□□ -1.24
HMGB1P41-201ENST00000520234 TRIM66O15016 1216 aa7.31□□□□□ -1.24
HMGB1P41-201ENST00000520234 PPFIA3O75145 1194 aa7.31□□□□□ -1.24
HMGB1P41-201ENST00000520234 Q3C1V9 767 aa7.31□□□□□ -1.24
HMGB1P41-201ENST00000520234 EHBP1Q8NDI1 1231 aa7.31□□□□□ -1.24
HMGB1P41-201ENST00000520234 SOBPA7XYQ1 873 aa7.3□□□□□ -1.24
HMGB1P41-201ENST00000520234 KRT76Q01546 638 aa7.3□□□□□ -1.24
HMGB1P41-201ENST00000520234 PURBQ96QR8 312 aaKnown RBP7.3□□□□□ -1.24
HMGB1P41-201ENST00000520234 MSTNO14793 375 aa7.29□□□□□ -1.24
HMGB1P41-201ENST00000520234 GCGRP47871 477 aa7.29□□□□□ -1.24
HMGB1P41-201ENST00000520234 GRIPAP1Q4V328 841 aa7.29□□□□□ -1.24
HMGB1P41-201ENST00000520234 ZNF385CQ66K41 422 aaPredicted RBP7.29□□□□□ -1.24
HMGB1P41-201ENST00000520234 CCDC24Q8N4L8 307 aa7.29□□□□□ -1.24
HMGB1P41-201ENST00000520234 SVOPQ8N4V2 548 aa7.29□□□□□ -1.24
HMGB1P41-201ENST00000520234 PDE4DQ08499 809 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms