RNA–Protein interactions for RNA: ENST00000517391.5

CPNE3-202, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 785 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-202ENST00000517391 EYA1Q99502 592 aa10.32□□□□□ -0.76
CPNE3-202ENST00000517391 PXYLP1Q8TE99 480 aa10.31□□□□□ -0.76
CPNE3-202ENST00000517391 PRR14Q9BWN1 585 aa10.31□□□□□ -0.76
CPNE3-202ENST00000517391 TNFRSF10AO00220 468 aa10.3□□□□□ -0.76
CPNE3-202ENST00000517391 RBM46Q8TBY0 533 aaKnown RBP10.3□□□□□ -0.76
CPNE3-202ENST00000517391 SLC4A3P48751 1232 aa10.29□□□□□ -0.76
CPNE3-202ENST00000517391 SKIV2LQ15477 1246 aaKnown RBP10.29□□□□□ -0.76
CPNE3-202ENST00000517391 FAM217BQ9NTX9 383 aaPredicted RBP10.29□□□□□ -0.76
CPNE3-202ENST00000517391 BEGAINQ9BUH8 593 aa10.28□□□□□ -0.76
CPNE3-202ENST00000517391 LIAT1Q6ZQX7 453 aa10.27□□□□□ -0.77
CPNE3-202ENST00000517391 CRIPAKQ8N1N5 446 aa10.27□□□□□ -0.77
CPNE3-202ENST00000517391 PCDHB3Q9Y5E6 796 aa10.27□□□□□ -0.77
CPNE3-202ENST00000517391 RCCD1A6NED2 376 aa10.26□□□□□ -0.77
CPNE3-202ENST00000517391 NFX1Q12986 1120 aaKnown RBP10.26□□□□□ -0.77
CPNE3-202ENST00000517391 DIXDC1Q155Q3 683 aa10.26□□□□□ -0.77
CPNE3-202ENST00000517391 SWT1Q5T5J6 900 aaKnown RBP10.26□□□□□ -0.77
CPNE3-202ENST00000517391 C11orf95C9JLR9 678 aaPredicted RBP10.24□□□□□ -0.77
CPNE3-202ENST00000517391 DNAJB2P25686 324 aa10.24□□□□□ -0.77
CPNE3-202ENST00000517391 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.23□□□□□ -0.77
CPNE3-202ENST00000517391 ATP1B4Q9UN42 357 aaPredicted RBP10.22□□□□□ -0.77
CPNE3-202ENST00000517391 PPEF1O14829 653 aaPredicted RBP10.21□□□□□ -0.77
CPNE3-202ENST00000517391 BLOC1S3Q6QNY0 202 aa10.21□□□□□ -0.77
CPNE3-202ENST00000517391 NLRP7Q8WX94 980 aa10.21□□□□□ -0.77
CPNE3-202ENST00000517391 TMEM134Q9H6X4 195 aa10.21□□□□□ -0.77
CPNE3-202ENST00000517391 GMPR2Q9P2T1 348 aaKnown RBP10.21□□□□□ -0.77
CPNE3-202ENST00000517391 S1PR4O95977 384 aa10.19□□□□□ -0.78
CPNE3-202ENST00000517391 DACH1Q9UI36 760 aa10.19□□□□□ -0.78
CPNE3-202ENST00000517391 AVPP01185 164 aa10.18□□□□□ -0.78
CPNE3-202ENST00000517391 POLR3EQ9NVU0 708 aa10.18□□□□□ -0.78
CPNE3-202ENST00000517391 FAM181BA6NEQ2 426 aa10.17□□□□□ -0.78
CPNE3-202ENST00000517391 A6NJR5 290 aa10.17□□□□□ -0.78
CPNE3-202ENST00000517391 AXIN1O15169 862 aa10.17□□□□□ -0.78
CPNE3-202ENST00000517391 TLL1O43897 1013 aa10.17□□□□□ -0.78
CPNE3-202ENST00000517391 MYSM1Q5VVJ2 828 aa10.17□□□□□ -0.78
CPNE3-202ENST00000517391 PROCA1Q8NCQ7 364 aaPredicted RBP10.17□□□□□ -0.78
CPNE3-202ENST00000517391 CLK2P49760 499 aaKnown RBP10.16□□□□□ -0.78
CPNE3-202ENST00000517391 CTC1Q2NKJ3 1217 aa10.16□□□□□ -0.78
CPNE3-202ENST00000517391 SULF1Q8IWU6 871 aa10.16□□□□□ -0.78
CPNE3-202ENST00000517391 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.16□□□□□ -0.78
CPNE3-202ENST00000517391 TBC1D2Q9BYX2 928 aa10.16□□□□□ -0.78
CPNE3-202ENST00000517391 UBTFP17480 764 aaKnown RBP10.15□□□□□ -0.78
CPNE3-202ENST00000517391 PKD2L1Q9P0L9 805 aa10.14□□□□□ -0.79
CPNE3-202ENST00000517391 FOXC1Q12948 553 aa10.13□□□□□ -0.79
CPNE3-202ENST00000517391 MCM6Q14566 821 aa10.13□□□□□ -0.79
CPNE3-202ENST00000517391 CD46P15529 392 aa10.12□□□□□ -0.79
CPNE3-202ENST00000517391 SMCPP49901 116 aaPredicted RBP10.12□□□□□ -0.79
CPNE3-202ENST00000517391 TERTO14746 1132 aaKnown RBP10.11□□□□□ -0.79
CPNE3-202ENST00000517391 ADH1BP00325 375 aa10.11□□□□□ -0.79
CPNE3-202ENST00000517391 SLC10A3P09131 477 aa10.11□□□□□ -0.79
CPNE3-202ENST00000517391 TUSC1Q2TAM9 212 aa10.11□□□□□ -0.79
CPNE3-202ENST00000517391 NUTM1Q86Y26 1132 aa10.11□□□□□ -0.79
CPNE3-202ENST00000517391 BANK1Q8NDB2 785 aa10.11□□□□□ -0.79
CPNE3-202ENST00000517391 DDX11L8A8MPP1 907 aa10.1□□□□□ -0.79
CPNE3-202ENST00000517391 TMEM259Q4ZIN3 620 aa10.1□□□□□ -0.79
CPNE3-202ENST00000517391 RIC3Q7Z5B4 369 aa10.1□□□□□ -0.79
CPNE3-202ENST00000517391 SPIRE2Q8WWL2 714 aa10.1□□□□□ -0.79
CPNE3-202ENST00000517391 SPDYE5A6NIY4 337 aa10.09□□□□□ -0.79
CPNE3-202ENST00000517391 RAD21O60216 631 aa10.09□□□□□ -0.79
CPNE3-202ENST00000517391 TRAK2O60296 914 aa10.09□□□□□ -0.79
CPNE3-202ENST00000517391 PLA2G2CQ5R387 149 aa10.09□□□□□ -0.79
CPNE3-202ENST00000517391 CLUAP1Q96AJ1 413 aa10.09□□□□□ -0.79
CPNE3-202ENST00000517391 TOR4AQ9NXH8 423 aa10.09□□□□□ -0.79
CPNE3-202ENST00000517391 APBB1O00213 710 aa10.08□□□□□ -0.8
CPNE3-202ENST00000517391 CFHP08603 1231 aa10.08□□□□□ -0.8
CPNE3-202ENST00000517391 RSPH4AQ5TD94 716 aa10.08□□□□□ -0.8
CPNE3-202ENST00000517391 PPP2R2DQ66LE6 453 aa10.08□□□□□ -0.8
CPNE3-202ENST00000517391 CYP4X1Q8N118 509 aa10.08□□□□□ -0.8
CPNE3-202ENST00000517391 RDH13Q8NBN7 331 aa10.08□□□□□ -0.8
CPNE3-202ENST00000517391 SLC6A16Q9GZN6 736 aa10.08□□□□□ -0.8
CPNE3-202ENST00000517391 SPTLC1O15269 473 aa10.07□□□□□ -0.8
CPNE3-202ENST00000517391 ACTN4O43707 911 aaKnown RBP10.07□□□□□ -0.8
CPNE3-202ENST00000517391 GJA5P36382 358 aa10.07□□□□□ -0.8
CPNE3-202ENST00000517391 RFC5P40937 340 aa10.07□□□□□ -0.8
CPNE3-202ENST00000517391 KMT5BQ4FZB7 885 aa10.07□□□□□ -0.8
CPNE3-202ENST00000517391 LCE2CQ5TA81 110 aa10.07□□□□□ -0.8
CPNE3-202ENST00000517391 LIMD1Q9UGP4 676 aa10.06□□□□□ -0.8
CPNE3-202ENST00000517391 NR1I2O75469 434 aa10.05□□□□□ -0.8
CPNE3-202ENST00000517391 RPIAP49247 311 aa10.04□□□□□ -0.8
CPNE3-202ENST00000517391 RSBN1LQ6PCB5 846 aaPredicted RBP10.04□□□□□ -0.8
CPNE3-202ENST00000517391 C1orf115Q9H7X2 142 aa10.04□□□□□ -0.8
CPNE3-202ENST00000517391 ARID3CA6NKF2 412 aa10.03□□□□□ -0.8
CPNE3-202ENST00000517391 PROSER2Q86WR7 435 aaPredicted RBP10.03□□□□□ -0.8
CPNE3-202ENST00000517391 SENP2Q9HC62 589 aa10.03□□□□□ -0.8
CPNE3-202ENST00000517391 CD2BP2O95400 341 aaKnown RBP10.02□□□□□ -0.81
CPNE3-202ENST00000517391 ARID3AQ99856 593 aa10.02□□□□□ -0.81
CPNE3-202ENST00000517391 MOXD2PA6NHM9 499 aa10.01□□□□□ -0.81
CPNE3-202ENST00000517391 USP46P62068 366 aa10.01□□□□□ -0.81
CPNE3-202ENST00000517391 SUZ12Q15022 739 aaKnown RBP10.01□□□□□ -0.81
CPNE3-202ENST00000517391 KDM4AO75164 1064 aa10□□□□□ -0.81
CPNE3-202ENST00000517391 SNRPBP14678 240 aaKnown RBP10□□□□□ -0.81
CPNE3-202ENST00000517391 LILRB3O75022 631 aa9.99□□□□□ -0.81
CPNE3-202ENST00000517391 GCGRP47871 477 aa9.99□□□□□ -0.81
CPNE3-202ENST00000517391 PRPF38BQ5VTL8 546 aaKnown RBP9.99□□□□□ -0.81
CPNE3-202ENST00000517391 SLC16A10Q8TF71 515 aa9.99□□□□□ -0.81
CPNE3-202ENST00000517391 TRIM47Q96LD4 638 aa9.99□□□□□ -0.81
CPNE3-202ENST00000517391 PRM3Q9NNZ6 103 aa9.99□□□□□ -0.81
CPNE3-202ENST00000517391 ATP13A2Q9NQ11 1180 aa9.99□□□□□ -0.81
CPNE3-202ENST00000517391 SNRKQ9NRH2 765 aa9.99□□□□□ -0.81
CPNE3-202ENST00000517391 SOCS7O14512 581 aa9.98□□□□□ -0.81
CPNE3-202ENST00000517391 PUS10Q3MIT2 529 aaKnown RBP9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms