RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 ESCO1Q5FWF5 840 aa17.13■□□□□ 0.33
LIMCH1-221ENST00000515785 ITGAEP38570 1179 aa17.12■□□□□ 0.33
LIMCH1-221ENST00000515785 SF3B2Q13435 895 aaKnown RBP17.12■□□□□ 0.33
LIMCH1-221ENST00000515785 ROBO2Q9HCK4 1378 aa17.12■□□□□ 0.33
LIMCH1-221ENST00000515785 COL22A1Q8NFW1 1626 aaPredicted RBP17.11■□□□□ 0.33
LIMCH1-221ENST00000515785 MARF1Q9Y4F3 1742 aaKnown RBP17.11■□□□□ 0.33
LIMCH1-221ENST00000515785 BLMP54132 1417 aaPredicted RBP17.11■□□□□ 0.33
LIMCH1-221ENST00000515785 PSDA5PKW4 1024 aaPredicted RBP17.1■□□□□ 0.33
LIMCH1-221ENST00000515785 FOXO3O43524 673 aa17.1■□□□□ 0.33
LIMCH1-221ENST00000515785 SPHKAPQ2M3C7 1700 aa17.1■□□□□ 0.33
LIMCH1-221ENST00000515785 BRWD3Q6RI45 1802 aa17.1■□□□□ 0.33
LIMCH1-221ENST00000515785 UNC5CLQ8IV45 518 aa17.09■□□□□ 0.33
LIMCH1-221ENST00000515785 MYOM2P54296 1465 aa17.09■□□□□ 0.33
LIMCH1-221ENST00000515785 NUTM2FA1L443 756 aa17.08■□□□□ 0.32
LIMCH1-221ENST00000515785 NEXMIFQ5QGS0 1516 aa17.07■□□□□ 0.32
LIMCH1-221ENST00000515785 RALGAPBQ86X10 1494 aa17.07■□□□□ 0.32
LIMCH1-221ENST00000515785 NPHP3Q7Z494 1330 aa17.07■□□□□ 0.32
LIMCH1-221ENST00000515785 PLEKHG5O94827 1062 aa17.07■□□□□ 0.32
LIMCH1-221ENST00000515785 SEPT12Q8IYM1 358 aa17.06■□□□□ 0.32
LIMCH1-221ENST00000515785 GLI3P10071 1580 aa17.06■□□□□ 0.32
LIMCH1-221ENST00000515785 ROCK1Q13464 1354 aa17.04■□□□□ 0.32
LIMCH1-221ENST00000515785 CCDC9Q9Y3X0 531 aaKnown RBP17.04■□□□□ 0.32
LIMCH1-221ENST00000515785 PXDNQ92626 1479 aa17.04■□□□□ 0.32
LIMCH1-221ENST00000515785 LRP5O75197 1615 aa17.03■□□□□ 0.32
LIMCH1-221ENST00000515785 CLTCL1P53675 1640 aa17.03■□□□□ 0.32
LIMCH1-221ENST00000515785 VGFO15240 615 aaPredicted RBP17.02■□□□□ 0.32
LIMCH1-221ENST00000515785 HRCP23327 699 aa17.02■□□□□ 0.32
LIMCH1-221ENST00000515785 KIF1BO60333 1816 aa17.02■□□□□ 0.31
LIMCH1-221ENST00000515785 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.01■□□□□ 0.31
LIMCH1-221ENST00000515785 HAP1P54257 671 aaPredicted RBP17■□□□□ 0.31
LIMCH1-221ENST00000515785 SLIT2O94813 1529 aa17■□□□□ 0.31
LIMCH1-221ENST00000515785 HFM1A2PYH4 1435 aa16.99■□□□□ 0.31
LIMCH1-221ENST00000515785 A0A0G2JS52 829 aa16.99■□□□□ 0.31
LIMCH1-221ENST00000515785 MYT1Q01538 1121 aa16.99■□□□□ 0.31
LIMCH1-221ENST00000515785 KRT27Q7Z3Y8 459 aa16.99■□□□□ 0.31
LIMCH1-221ENST00000515785 CABLES1Q8TDN4 633 aa16.99■□□□□ 0.31
LIMCH1-221ENST00000515785 STK26Q9P289 416 aa16.99■□□□□ 0.31
LIMCH1-221ENST00000515785 WAPLQ7Z5K2 1190 aa16.98■□□□□ 0.31
LIMCH1-221ENST00000515785 LRPPRCP42704 1394 aaKnown RBP16.98■□□□□ 0.31
LIMCH1-221ENST00000515785 BAG6P46379 1132 aa16.97■□□□□ 0.31
LIMCH1-221ENST00000515785 VPS72Q15906 364 aa16.97■□□□□ 0.31
LIMCH1-221ENST00000515785 KRT28Q7Z3Y7 464 aa16.97■□□□□ 0.31
LIMCH1-221ENST00000515785 SPATA31A3Q5VYP0 1347 aa16.96■□□□□ 0.31
LIMCH1-221ENST00000515785 EN1Q05925 392 aaPredicted RBP16.95■□□□□ 0.3
LIMCH1-221ENST00000515785 R3HDM1Q15032 1099 aaKnown RBP16.95■□□□□ 0.3
LIMCH1-221ENST00000515785 NAIPQ13075 1403 aa16.95■□□□□ 0.3
LIMCH1-221ENST00000515785 ONECUT3O60422 494 aaPredicted RBP16.94■□□□□ 0.3
LIMCH1-221ENST00000515785 LMOD2Q6P5Q4 547 aa16.94■□□□□ 0.3
LIMCH1-221ENST00000515785 CDC42BPGQ6DT37 1551 aa16.94■□□□□ 0.3
LIMCH1-221ENST00000515785 FAM182BQ5T319 152 aa16.93■□□□□ 0.3
LIMCH1-221ENST00000515785 USP32Q8NFA0 1604 aa16.92■□□□□ 0.3
LIMCH1-221ENST00000515785 FAM98CQ17RN3 349 aaKnown RBP16.91■□□□□ 0.3
LIMCH1-221ENST00000515785 PPARGC1BQ86YN6 1023 aaKnown RBP16.91■□□□□ 0.3
LIMCH1-221ENST00000515785 RPGRIP1LQ68CZ1 1315 aa16.91■□□□□ 0.3
LIMCH1-221ENST00000515785 FAM83GA6ND36 823 aa16.9■□□□□ 0.3
LIMCH1-221ENST00000515785 PLCH1Q4KWH8 1693 aa16.9■□□□□ 0.3
LIMCH1-221ENST00000515785 PRAG1Q86YV5 1406 aa16.89■□□□□ 0.29
LIMCH1-221ENST00000515785 MAPK8IP2Q13387 824 aaPredicted RBP16.89■□□□□ 0.29
LIMCH1-221ENST00000515785 TMEM132EQ6IEE7 984 aa16.89■□□□□ 0.29
LIMCH1-221ENST00000515785 PLEKHH1Q9ULM0 1364 aa16.89■□□□□ 0.29
LIMCH1-221ENST00000515785 PPLO60437 1756 aa16.88■□□□□ 0.29
LIMCH1-221ENST00000515785 PSME1Q06323 249 aa16.88■□□□□ 0.29
LIMCH1-221ENST00000515785 RGPD8O14715 1765 aaPredicted RBP16.87■□□□□ 0.29
LIMCH1-221ENST00000515785 YY1P25490 414 aa16.87■□□□□ 0.29
LIMCH1-221ENST00000515785 ADGRF5Q8IZF2 1346 aa16.87■□□□□ 0.29
LIMCH1-221ENST00000515785 CCDC144AA2RUR9 1427 aa16.87■□□□□ 0.29
LIMCH1-221ENST00000515785 EZH2Q15910 746 aaKnown RBP16.86■□□□□ 0.29
LIMCH1-221ENST00000515785 PHF8Q9UPP1 1060 aa16.86■□□□□ 0.29
LIMCH1-221ENST00000515785 NWD2Q9ULI1 1742 aa16.86■□□□□ 0.29
LIMCH1-221ENST00000515785 FMN2Q9NZ56 1722 aa16.85■□□□□ 0.29
LIMCH1-221ENST00000515785 KIF1AQ12756 1690 aa16.85■□□□□ 0.29
LIMCH1-221ENST00000515785 RGL3Q3MIN7 710 aa16.84■□□□□ 0.29
LIMCH1-221ENST00000515785 BTG4Q9NY30 223 aa16.84■□□□□ 0.29
LIMCH1-221ENST00000515785 TNS3Q68CZ2 1445 aa16.84■□□□□ 0.29
LIMCH1-221ENST00000515785 RGPD1P0DJD0 1748 aa16.83■□□□□ 0.28
LIMCH1-221ENST00000515785 ABCA3Q99758 1704 aa16.8■□□□□ 0.28
LIMCH1-221ENST00000515785 PMFBP1Q8TBY8 1022 aa16.8■□□□□ 0.28
LIMCH1-221ENST00000515785 SLC4A1APQ9BWU0 796 aaKnown RBP16.8■□□□□ 0.28
LIMCH1-221ENST00000515785 ABCC11Q96J66 1382 aa16.79■□□□□ 0.28
LIMCH1-221ENST00000515785 TRIM37O94972 964 aa16.79■□□□□ 0.28
LIMCH1-221ENST00000515785 SAFB2Q14151 953 aaKnown RBP eCLIP16.79■□□□□ 0.28
LIMCH1-221ENST00000515785 SBNO1A3KN83 1393 aa16.78■□□□□ 0.28
LIMCH1-221ENST00000515785 CAMKK2Q96RR4 588 aa16.78■□□□□ 0.28
LIMCH1-221ENST00000515785 NRAPQ86VF7 1730 aa16.78■□□□□ 0.28
LIMCH1-221ENST00000515785 IFT172Q9UG01 1749 aa16.78■□□□□ 0.28
LIMCH1-221ENST00000515785 TECPR2O15040 1411 aa16.78■□□□□ 0.28
LIMCH1-221ENST00000515785 ARHGEF10O15013 1369 aa16.77■□□□□ 0.28
LIMCH1-221ENST00000515785 APBA3O96018 575 aa16.77■□□□□ 0.28
LIMCH1-221ENST00000515785 RRBP1Q9P2E9 1410 aaKnown RBP16.77■□□□□ 0.27
LIMCH1-221ENST00000515785 TNS1Q9HBL0 1735 aaKnown RBP16.76■□□□□ 0.27
LIMCH1-221ENST00000515785 SPATA31A5Q5VU36 1347 aa16.75■□□□□ 0.27
LIMCH1-221ENST00000515785 SPATA31A7Q8IWB4 1347 aa16.75■□□□□ 0.27
LIMCH1-221ENST00000515785 YTHDC2Q9H6S0 1430 aaKnown RBP16.75■□□□□ 0.27
LIMCH1-221ENST00000515785 KNDC1Q76NI1 1749 aa16.74■□□□□ 0.27
LIMCH1-221ENST00000515785 NRXN1Q9ULB1 1477 aa16.73■□□□□ 0.27
LIMCH1-221ENST00000515785 PPP1R1BQ9UD71 204 aaPredicted RBP16.73■□□□□ 0.27
LIMCH1-221ENST00000515785 DISP2A7MBM2 1401 aa16.72■□□□□ 0.27
LIMCH1-221ENST00000515785 COL14A1Q05707 1796 aaKnown RBP16.72■□□□□ 0.27
LIMCH1-221ENST00000515785 DCAF8L1A6NGE4 600 aa16.72■□□□□ 0.27
LIMCH1-221ENST00000515785 FAM196AQ6ZSG2 479 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms