RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 POGZQ7Z3K3 1410 aa12.32□□□□□ -0.44
VCAN-210ENST00000513960 CARD14Q9BXL6 1004 aa12.32□□□□□ -0.44
VCAN-210ENST00000513960 ABCA6Q8N139 1617 aa12.32□□□□□ -0.44
VCAN-210ENST00000513960 TMEM132EQ6IEE7 984 aa12.32□□□□□ -0.44
VCAN-210ENST00000513960 MORC1Q86VD1 984 aa12.32□□□□□ -0.44
VCAN-210ENST00000513960 LMTK2Q8IWU2 1503 aa12.31□□□□□ -0.44
VCAN-210ENST00000513960 C14orf93Q9H972 538 aaKnown RBP12.31□□□□□ -0.44
VCAN-210ENST00000513960 PPRC1Q5VV67 1664 aaKnown RBP12.31□□□□□ -0.44
VCAN-210ENST00000513960 RPGRIP1LQ68CZ1 1315 aa12.31□□□□□ -0.44
VCAN-210ENST00000513960 NPATQ14207 1427 aa12.31□□□□□ -0.44
VCAN-210ENST00000513960 TRIM44Q96DX7 344 aaPredicted RBP12.31□□□□□ -0.44
VCAN-210ENST00000513960 COG6Q9Y2V7 657 aa12.31□□□□□ -0.44
VCAN-210ENST00000513960 RAPGEF3O95398 923 aa12.3□□□□□ -0.44
VCAN-210ENST00000513960 MLH3Q9UHC1 1453 aa12.3□□□□□ -0.44
VCAN-210ENST00000513960 SBNO2Q9Y2G9 1366 aa12.3□□□□□ -0.44
VCAN-210ENST00000513960 BCAR3O75815 825 aa12.3□□□□□ -0.44
VCAN-210ENST00000513960 TNNT2P45379 298 aaPredicted RBP12.3□□□□□ -0.44
VCAN-210ENST00000513960 SLFN5Q08AF3 891 aa12.3□□□□□ -0.44
VCAN-210ENST00000513960 CFAP65Q6ZU64 1925 aaKnown RBP12.29□□□□□ -0.44
VCAN-210ENST00000513960 CFAP74Q9C0B2 1584 aa12.29□□□□□ -0.44
VCAN-210ENST00000513960 VGFO15240 615 aaPredicted RBP12.29□□□□□ -0.44
VCAN-210ENST00000513960 NUTM2DQ5VT03 806 aaPredicted RBP12.29□□□□□ -0.44
VCAN-210ENST00000513960 NGEFQ8N5V2 710 aa12.29□□□□□ -0.44
VCAN-210ENST00000513960 SLC12A5Q9H2X9 1139 aa12.29□□□□□ -0.44
VCAN-210ENST00000513960 ZNF521Q96K83 1311 aa12.29□□□□□ -0.44
VCAN-210ENST00000513960 MYOM1P52179 1685 aa12.28□□□□□ -0.44
VCAN-210ENST00000513960 E9PSI1 815 aa12.28□□□□□ -0.44
VCAN-210ENST00000513960 CLUAP1Q96AJ1 413 aa12.28□□□□□ -0.44
VCAN-210ENST00000513960 ADGRB3O60242 1522 aa12.28□□□□□ -0.44
VCAN-210ENST00000513960 ARID3AQ99856 593 aa12.28□□□□□ -0.44
VCAN-210ENST00000513960 NRXN1Q9ULB1 1477 aa12.27□□□□□ -0.44
VCAN-210ENST00000513960 PANK1Q8TE04 598 aa12.27□□□□□ -0.44
VCAN-210ENST00000513960 BCL2L13Q9BXK5 485 aa12.27□□□□□ -0.44
VCAN-210ENST00000513960 PANK2Q9BZ23 570 aa12.27□□□□□ -0.45
VCAN-210ENST00000513960 NSD3Q9BZ95 1437 aa12.27□□□□□ -0.45
VCAN-210ENST00000513960 SEC24BO95487 1268 aa12.27□□□□□ -0.45
VCAN-210ENST00000513960 MROH2AA6NES4 1674 aa12.26□□□□□ -0.45
VCAN-210ENST00000513960 HECW2Q9P2P5 1572 aa12.26□□□□□ -0.45
VCAN-210ENST00000513960 MFAP1P55081 439 aaKnown RBP12.26□□□□□ -0.45
VCAN-210ENST00000513960 CFAP53Q96M91 514 aa12.26□□□□□ -0.45
VCAN-210ENST00000513960 EVC2Q86UK5 1308 aa12.26□□□□□ -0.45
VCAN-210ENST00000513960 CGNL1Q0VF96 1302 aa12.25□□□□□ -0.45
VCAN-210ENST00000513960 SETBP1Q9Y6X0 1596 aa12.25□□□□□ -0.45
VCAN-210ENST00000513960 POLR3AO14802 1390 aaPredicted RBP12.25□□□□□ -0.45
VCAN-210ENST00000513960 ZMYND15Q9H091 742 aa12.24□□□□□ -0.45
VCAN-210ENST00000513960 SENP3Q9H4L4 574 aaPredicted RBP12.24□□□□□ -0.45
VCAN-210ENST00000513960 IFT172Q9UG01 1749 aa12.24□□□□□ -0.45
VCAN-210ENST00000513960 SAFB2Q14151 953 aaKnown RBP eCLIP12.24□□□□□ -0.45
VCAN-210ENST00000513960 NKTRP30414 1462 aaKnown RBP12.24□□□□□ -0.45
VCAN-210ENST00000513960 KDM2BQ8NHM5 1336 aa12.23□□□□□ -0.45
VCAN-210ENST00000513960 IGHDP01880 384 aa12.23□□□□□ -0.45
VCAN-210ENST00000513960 MYH16Q9H6N6 1097 aa12.23□□□□□ -0.45
VCAN-210ENST00000513960 FOXD4L1Q9NU39 408 aa12.23□□□□□ -0.45
VCAN-210ENST00000513960 ABCC3O15438 1527 aa12.23□□□□□ -0.45
VCAN-210ENST00000513960 SPINK5Q9NQ38 1064 aaPredicted RBP12.23□□□□□ -0.45
VCAN-210ENST00000513960 RRP7AQ9Y3A4 280 aaKnown RBP12.23□□□□□ -0.45
VCAN-210ENST00000513960 NEO1Q92859 1461 aa12.23□□□□□ -0.45
VCAN-210ENST00000513960 FRMPD1Q5SYB0 1578 aa12.23□□□□□ -0.45
VCAN-210ENST00000513960 TRMT2AQ8IZ69 625 aaKnown RBP12.23□□□□□ -0.45
VCAN-210ENST00000513960 STK26Q9P289 416 aa12.22□□□□□ -0.45
VCAN-210ENST00000513960 IDI1Q13907 227 aa12.22□□□□□ -0.45
VCAN-210ENST00000513960 RUNDC1Q96C34 613 aa12.22□□□□□ -0.45
VCAN-210ENST00000513960 SLC52A1Q9NWF4 448 aa12.22□□□□□ -0.45
VCAN-210ENST00000513960 MYO3AQ8NEV4 1616 aa12.22□□□□□ -0.45
VCAN-210ENST00000513960 MTHFSP49914 203 aa12.21□□□□□ -0.45
VCAN-210ENST00000513960 WWC1Q8IX03 1113 aa12.21□□□□□ -0.45
VCAN-210ENST00000513960 XRCC6P12956 609 aaKnown RBP eCLIP12.21□□□□□ -0.45
VCAN-210ENST00000513960 SRPK2P78362 688 aaKnown RBP12.21□□□□□ -0.46
VCAN-210ENST00000513960 CABP2Q9NPB3 220 aa12.2□□□□□ -0.46
VCAN-210ENST00000513960 PUS7Q96PZ0 661 aaKnown RBP12.2□□□□□ -0.46
VCAN-210ENST00000513960 STAG3Q9UJ98 1225 aa12.2□□□□□ -0.46
VCAN-210ENST00000513960 PPLO60437 1756 aa12.2□□□□□ -0.46
VCAN-210ENST00000513960 TCP11L2Q8N4U5 519 aa12.2□□□□□ -0.46
VCAN-210ENST00000513960 TRAK2O60296 914 aa12.19□□□□□ -0.46
VCAN-210ENST00000513960 ANP32BQ92688 251 aaKnown RBP12.19□□□□□ -0.46
VCAN-210ENST00000513960 HSCBQ8IWL3 235 aa12.19□□□□□ -0.46
VCAN-210ENST00000513960 MAPK8IP3Q9UPT6 1336 aa12.19□□□□□ -0.46
VCAN-210ENST00000513960 ADGRB1O14514 1584 aa12.19□□□□□ -0.46
VCAN-210ENST00000513960 QRICH2Q9H0J4 1663 aa12.19□□□□□ -0.46
VCAN-210ENST00000513960 ZBTB7CA1YPR0 619 aa12.19□□□□□ -0.46
VCAN-210ENST00000513960 DMRT2Q9Y5R5 561 aa12.19□□□□□ -0.46
VCAN-210ENST00000513960 NCLP19338 710 aaKnown RBP12.18□□□□□ -0.46
VCAN-210ENST00000513960 U2AF1L5P0DN76 240 aaPredicted RBP12.18□□□□□ -0.46
VCAN-210ENST00000513960 U2AF1Q01081 240 aaKnown RBP eCLIP12.18□□□□□ -0.46
VCAN-210ENST00000513960 TBC1D2Q9BYX2 928 aa12.18□□□□□ -0.46
VCAN-210ENST00000513960 CAMSAP1Q5T5Y3 1602 aa12.18□□□□□ -0.46
VCAN-210ENST00000513960 ANKRD36BQ8N2N9 1353 aa12.17□□□□□ -0.46
VCAN-210ENST00000513960 MCM4P33991 863 aa12.17□□□□□ -0.46
VCAN-210ENST00000513960 FTSJ3Q8IY81 847 aaKnown RBP12.17□□□□□ -0.46
VCAN-210ENST00000513960 HSP90AB1P08238 724 aaKnown RBP12.17□□□□□ -0.46
VCAN-210ENST00000513960 PDE3AQ14432 1141 aa12.17□□□□□ -0.46
VCAN-210ENST00000513960 CYB5RLQ6IPT4 315 aa12.17□□□□□ -0.46
VCAN-210ENST00000513960 ARHGAP31Q2M1Z3 1444 aa12.16□□□□□ -0.46
VCAN-210ENST00000513960 NSD2O96028 1365 aa12.16□□□□□ -0.46
VCAN-210ENST00000513960 GLI2P10070 1586 aa12.15□□□□□ -0.46
VCAN-210ENST00000513960 TERF2IPQ9NYB0 399 aa12.15□□□□□ -0.46
VCAN-210ENST00000513960 PDZRN3Q9UPQ7 1066 aa12.15□□□□□ -0.46
VCAN-210ENST00000513960 WDR63Q8IWG1 891 aa12.15□□□□□ -0.46
VCAN-210ENST00000513960 DIP2CQ9Y2E4 1556 aa12.15□□□□□ -0.46
VCAN-210ENST00000513960 MINK1Q8N4C8 1332 aaPredicted RBP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms