RNA–Protein interactions for RNA: ENST00000513873.1

CLDND1-228, Transcript of claudin domain containing 1, humanhuman

TSL 3

Gene CLDND1, Length 538 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-228ENST00000513873 CYP4X1Q8N118 509 aa8.84□□□□□ -0.99
CLDND1-228ENST00000513873 DACH1Q9UI36 760 aa8.84□□□□□ -0.99
CLDND1-228ENST00000513873 AVPP01185 164 aa8.83□□□□□ -1
CLDND1-228ENST00000513873 NLRP7Q8WX94 980 aa8.83□□□□□ -1
CLDND1-228ENST00000513873 PHOX2BQ99453 314 aa8.83□□□□□ -1
CLDND1-228ENST00000513873 DDX11L8A8MPP1 907 aa8.82□□□□□ -1
CLDND1-228ENST00000513873 TERTO14746 1132 aaKnown RBP8.82□□□□□ -1
CLDND1-228ENST00000513873 KMT5BQ4FZB7 885 aa8.82□□□□□ -1
CLDND1-228ENST00000513873 RDH13Q8NBN7 331 aa8.82□□□□□ -1
CLDND1-228ENST00000513873 ADH1BP00325 375 aa8.81□□□□□ -1
CLDND1-228ENST00000513873 SLC6A16Q9GZN6 736 aa8.81□□□□□ -1
CLDND1-228ENST00000513873 SMCPP49901 116 aaPredicted RBP8.8□□□□□ -1
CLDND1-228ENST00000513873 NEUROD2Q15784 382 aa8.8□□□□□ -1
CLDND1-228ENST00000513873 SENP2Q9HC62 589 aa8.8□□□□□ -1
CLDND1-228ENST00000513873 PKD2L1Q9P0L9 805 aa8.8□□□□□ -1
CLDND1-228ENST00000513873 NR1I2O75469 434 aa8.79□□□□□ -1
CLDND1-228ENST00000513873 SLC16A10Q8TF71 515 aa8.79□□□□□ -1
CLDND1-228ENST00000513873 CCDC180Q9P1Z9 1646 aa8.79□□□□□ -1
CLDND1-228ENST00000513873 CD2BP2O95400 341 aaKnown RBP8.78□□□□□ -1
CLDND1-228ENST00000513873 SSTR3P32745 418 aaPredicted RBP8.78□□□□□ -1
CLDND1-228ENST00000513873 GIGYF2Q6Y7W6 1299 aaKnown RBP8.78□□□□□ -1
CLDND1-228ENST00000513873 PARP9Q8IXQ6 854 aa8.77□□□□□ -1.01
CLDND1-228ENST00000513873 SUZ12Q15022 739 aaKnown RBP8.76□□□□□ -1.01
CLDND1-228ENST00000513873 FAM217BQ9NTX9 383 aaPredicted RBP8.76□□□□□ -1.01
CLDND1-228ENST00000513873 TOR4AQ9NXH8 423 aa8.76□□□□□ -1.01
CLDND1-228ENST00000513873 TTC24A2A3L6 582 aaPredicted RBP8.75□□□□□ -1.01
CLDND1-228ENST00000513873 ACTN4O43707 911 aaKnown RBP8.75□□□□□ -1.01
CLDND1-228ENST00000513873 RPIAP49247 311 aa8.75□□□□□ -1.01
CLDND1-228ENST00000513873 CFHP08603 1231 aa8.74□□□□□ -1.01
CLDND1-228ENST00000513873 NUTM1Q86Y26 1132 aa8.74□□□□□ -1.01
CLDND1-228ENST00000513873 ZSCAN1Q8NBB4 408 aa8.74□□□□□ -1.01
CLDND1-228ENST00000513873 GRIPAP1Q4V328 841 aa8.73□□□□□ -1.01
CLDND1-228ENST00000513873 PLA2G2CQ5R387 149 aa8.73□□□□□ -1.01
CLDND1-228ENST00000513873 KIFC2Q96AC6 838 aa8.73□□□□□ -1.01
CLDND1-228ENST00000513873 KDM4CQ9H3R0 1056 aa8.73□□□□□ -1.01
CLDND1-228ENST00000513873 CD46P15529 392 aa8.72□□□□□ -1.01
CLDND1-228ENST00000513873 TRIM47Q96LD4 638 aa8.72□□□□□ -1.01
CLDND1-228ENST00000513873 REPIN1Q9BWE0 567 aaKnown RBP8.72□□□□□ -1.01
CLDND1-228ENST00000513873 GPBP1L1Q9HC44 474 aaPredicted RBP8.72□□□□□ -1.01
CLDND1-228ENST00000513873 ATP13A2Q9NQ11 1180 aa8.72□□□□□ -1.01
CLDND1-228ENST00000513873 SLC10A3P09131 477 aa8.71□□□□□ -1.02
CLDND1-228ENST00000513873 SNRPBP14678 240 aaKnown RBP8.71□□□□□ -1.02
CLDND1-228ENST00000513873 GCGRP47871 477 aa8.71□□□□□ -1.02
CLDND1-228ENST00000513873 DIXDC1Q155Q3 683 aa8.71□□□□□ -1.02
CLDND1-228ENST00000513873 DDRGK1Q96HY6 314 aa8.71□□□□□ -1.02
CLDND1-228ENST00000513873 BEGAINQ9BUH8 593 aa8.71□□□□□ -1.02
CLDND1-228ENST00000513873 BRPF1P55201 1214 aaPredicted RBP8.7□□□□□ -1.02
CLDND1-228ENST00000513873 KDM4AO75164 1064 aa8.69□□□□□ -1.02
CLDND1-228ENST00000513873 USP46P62068 366 aa8.69□□□□□ -1.02
CLDND1-228ENST00000513873 MS4A1P11836 297 aa8.68□□□□□ -1.02
CLDND1-228ENST00000513873 ATP1B4Q9UN42 357 aaPredicted RBP8.68□□□□□ -1.02
CLDND1-228ENST00000513873 LCE2CQ5TA81 110 aa8.67□□□□□ -1.02
CLDND1-228ENST00000513873 IRF7Q92985 503 aa8.67□□□□□ -1.02
CLDND1-228ENST00000513873 SPSB2Q99619 263 aa8.67□□□□□ -1.02
CLDND1-228ENST00000513873 RSPH6AQ9H0K4 717 aa8.67□□□□□ -1.02
CLDND1-228ENST00000513873 ZBTB24O43167 697 aaPredicted RBP8.66□□□□□ -1.02
CLDND1-228ENST00000513873 ATP6V1AP38606 617 aa8.66□□□□□ -1.02
CLDND1-228ENST00000513873 SCUBE3Q8IX30 993 aa8.65□□□□□ -1.02
CLDND1-228ENST00000513873 FUT2Q10981 343 aa8.64□□□□□ -1.03
CLDND1-228ENST00000513873 IL27Q8NEV9 243 aa8.64□□□□□ -1.03
CLDND1-228ENST00000513873 SNIP1Q8TAD8 396 aaKnown RBP8.63□□□□□ -1.03
CLDND1-228ENST00000513873 SPIRE2Q8WWL2 714 aa8.63□□□□□ -1.03
CLDND1-228ENST00000513873 TBC1D2Q9BYX2 928 aa8.63□□□□□ -1.03
CLDND1-228ENST00000513873 FAM117AQ9C073 453 aa8.63□□□□□ -1.03
CLDND1-228ENST00000513873 NXF1Q9UBU9 619 aaKnown RBP8.63□□□□□ -1.03
CLDND1-228ENST00000513873 GMPRP36959 345 aa8.62□□□□□ -1.03
CLDND1-228ENST00000513873 FCF1Q9Y324 198 aaKnown RBP8.62□□□□□ -1.03
CLDND1-228ENST00000513873 PUS10Q3MIT2 529 aaKnown RBP8.61□□□□□ -1.03
CLDND1-228ENST00000513873 NPAS3Q8IXF0 933 aa8.61□□□□□ -1.03
CLDND1-228ENST00000513873 Q3C1V9 767 aa8.6□□□□□ -1.03
CLDND1-228ENST00000513873 HOXA2O43364 376 aa8.59□□□□□ -1.03
CLDND1-228ENST00000513873 RB1CC1Q8TDY2 1594 aa8.58□□□□□ -1.04
CLDND1-228ENST00000513873 FDX1P10109 184 aa8.58□□□□□ -1.04
CLDND1-228ENST00000513873 SMPD1P17405 629 aa8.58□□□□□ -1.04
CLDND1-228ENST00000513873 MORN1Q5T089 497 aa8.58□□□□□ -1.04
CLDND1-228ENST00000513873 RIC3Q7Z5B4 369 aa8.58□□□□□ -1.04
CLDND1-228ENST00000513873 WNT7AO00755 349 aa8.57□□□□□ -1.04
CLDND1-228ENST00000513873 FMNL1O95466 1100 aaPredicted RBP8.57□□□□□ -1.04
CLDND1-228ENST00000513873 MOXD2PA6NHM9 499 aa8.56□□□□□ -1.04
CLDND1-228ENST00000513873 NDUFV2P19404 249 aa8.56□□□□□ -1.04
CLDND1-228ENST00000513873 GJA5P36382 358 aa8.56□□□□□ -1.04
CLDND1-228ENST00000513873 SKIV2LQ15477 1246 aaKnown RBP8.56□□□□□ -1.04
CLDND1-228ENST00000513873 MYSM1Q5VVJ2 828 aa8.56□□□□□ -1.04
CLDND1-228ENST00000513873 PCMTD1Q96MG8 357 aaPredicted RBP8.56□□□□□ -1.04
CLDND1-228ENST00000513873 POLR3EQ9NVU0 708 aa8.56□□□□□ -1.04
CLDND1-228ENST00000513873 SLC27A5Q9Y2P5 690 aa8.56□□□□□ -1.04
CLDND1-228ENST00000513873 PLEKHG3A1L390 1219 aa8.55□□□□□ -1.04
CLDND1-228ENST00000513873 C6orf229H3BNL8 230 aa8.55□□□□□ -1.04
CLDND1-228ENST00000513873 CLK2P49760 499 aaKnown RBP8.55□□□□□ -1.04
CLDND1-228ENST00000513873 SH3D19Q5HYK7 790 aa8.55□□□□□ -1.04
CLDND1-228ENST00000513873 NUTM2BA6NNL0 878 aaPredicted RBP8.54□□□□□ -1.04
CLDND1-228ENST00000513873 NUTM2EB1AL46 878 aaPredicted RBP8.54□□□□□ -1.04
CLDND1-228ENST00000513873 SPTLC1O15269 473 aa8.54□□□□□ -1.04
CLDND1-228ENST00000513873 CSPP1Q1MSJ5 1256 aa8.54□□□□□ -1.04
CLDND1-228ENST00000513873 NUTM2DQ5VT03 806 aaPredicted RBP8.54□□□□□ -1.04
CLDND1-228ENST00000513873 RSBN1LQ6PCB5 846 aaPredicted RBP8.54□□□□□ -1.04
CLDND1-228ENST00000513873 NUTM2AQ8IVF1 878 aaPredicted RBP8.54□□□□□ -1.04
CLDND1-228ENST00000513873 SALL2Q9Y467 1007 aaPredicted RBP8.54□□□□□ -1.04
CLDND1-228ENST00000513873 GUCA2AQ02747 115 aa8.53□□□□□ -1.04
CLDND1-228ENST00000513873 GOPCQ9HD26 462 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms