RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 COL16A1Q07092 1604 aaPredicted RBP14.08□□□□□ -0.15
RNF4-221ENST00000513643 ORAI2Q96SN7 254 aa14.08□□□□□ -0.16
RNF4-221ENST00000513643 NBPF1Q3BBV0 1214 aa14.07□□□□□ -0.16
RNF4-221ENST00000513643 JCADQ9P266 1359 aa14.07□□□□□ -0.16
RNF4-221ENST00000513643 TRAK1Q9UPV9 953 aa14.06□□□□□ -0.16
RNF4-221ENST00000513643 SOS2Q07890 1332 aaPredicted RBP14.06□□□□□ -0.16
RNF4-221ENST00000513643 KIAA1210Q9ULL0 1709 aa14.06□□□□□ -0.16
RNF4-221ENST00000513643 DISP3Q9P2K9 1392 aa14.06□□□□□ -0.16
RNF4-221ENST00000513643 MED1Q15648 1581 aaPredicted RBP14.05□□□□□ -0.16
RNF4-221ENST00000513643 PHLPP1O60346 1717 aa14.04□□□□□ -0.16
RNF4-221ENST00000513643 NEUROD1Q13562 356 aa14.04□□□□□ -0.16
RNF4-221ENST00000513643 NHSL1Q5SYE7 1610 aa14.04□□□□□ -0.16
RNF4-221ENST00000513643 DDX17Q92841 729 aaKnown RBP14.03□□□□□ -0.16
RNF4-221ENST00000513643 ADGRB2O60241 1585 aa14.02□□□□□ -0.16
RNF4-221ENST00000513643 NBPF8Q3BBV2 869 aa14.02□□□□□ -0.17
RNF4-221ENST00000513643 LRRC59Q96AG4 307 aaKnown RBP14.02□□□□□ -0.17
RNF4-221ENST00000513643 POGKQ9P215 609 aa14.02□□□□□ -0.17
RNF4-221ENST00000513643 RGS17Q9UGC6 210 aaPredicted RBP14.02□□□□□ -0.17
RNF4-221ENST00000513643 SPATA31A6Q5VVP1 1343 aa14.01□□□□□ -0.17
RNF4-221ENST00000513643 ESCO1Q5FWF5 840 aa14.01□□□□□ -0.17
RNF4-221ENST00000513643 ILDR2Q71H61 639 aa14.01□□□□□ -0.17
RNF4-221ENST00000513643 FMN2Q9NZ56 1722 aa14.01□□□□□ -0.17
RNF4-221ENST00000513643 GPRASP1Q5JY77 1395 aa14□□□□□ -0.17
RNF4-221ENST00000513643 SAFB2Q14151 953 aaKnown RBP eCLIP14□□□□□ -0.17
RNF4-221ENST00000513643 ANKARQ7Z5J8 1434 aa13.99□□□□□ -0.17
RNF4-221ENST00000513643 WASLO00401 505 aaPredicted RBP13.99□□□□□ -0.17
RNF4-221ENST00000513643 PXDNQ92626 1479 aa13.99□□□□□ -0.17
RNF4-221ENST00000513643 PNPLA6Q8IY17 1366 aa13.98□□□□□ -0.17
RNF4-221ENST00000513643 NPHP3Q7Z494 1330 aa13.98□□□□□ -0.17
RNF4-221ENST00000513643 PRR36Q9H6K5 1346 aa13.98□□□□□ -0.17
RNF4-221ENST00000513643 FOXO3O43524 673 aa13.98□□□□□ -0.17
RNF4-221ENST00000513643 ARHGEF28Q8N1W1 1705 aaKnown RBP13.98□□□□□ -0.17
RNF4-221ENST00000513643 SHPRHQ149N8 1683 aa13.98□□□□□ -0.17
RNF4-221ENST00000513643 NUTM2FA1L443 756 aa13.97□□□□□ -0.17
RNF4-221ENST00000513643 PCGF6Q9BYE7 350 aa13.97□□□□□ -0.17
RNF4-221ENST00000513643 LRP6O75581 1613 aa13.97□□□□□ -0.17
RNF4-221ENST00000513643 MINK1Q8N4C8 1332 aaPredicted RBP13.96□□□□□ -0.17
RNF4-221ENST00000513643 CLSPNQ9HAW4 1339 aa13.96□□□□□ -0.17
RNF4-221ENST00000513643 HIRIP3Q9BW71 556 aaPredicted RBP13.96□□□□□ -0.17
RNF4-221ENST00000513643 PHF8Q9UPP1 1060 aa13.96□□□□□ -0.17
RNF4-221ENST00000513643 USP32Q8NFA0 1604 aa13.96□□□□□ -0.17
RNF4-221ENST00000513643 TRPM1Q7Z4N2 1603 aa13.95□□□□□ -0.18
RNF4-221ENST00000513643 TULP4Q9NRJ4 1543 aa13.94□□□□□ -0.18
RNF4-221ENST00000513643 EIF3AQ14152 1382 aaKnown RBP13.94□□□□□ -0.18
RNF4-221ENST00000513643 SPATA31A3Q5VYP0 1347 aa13.93□□□□□ -0.18
RNF4-221ENST00000513643 CENPJQ9HC77 1338 aaPredicted RBP13.93□□□□□ -0.18
RNF4-221ENST00000513643 CDK19Q9BWU1 502 aa13.93□□□□□ -0.18
RNF4-221ENST00000513643 TIMELESSQ9UNS1 1208 aa13.93□□□□□ -0.18
RNF4-221ENST00000513643 TONSLQ96HA7 1378 aa13.93□□□□□ -0.18
RNF4-221ENST00000513643 KRT28Q7Z3Y7 464 aa13.92□□□□□ -0.18
RNF4-221ENST00000513643 NUDT16Q96DE0 195 aaKnown RBP13.92□□□□□ -0.18
RNF4-221ENST00000513643 ROCK2O75116 1388 aaKnown RBP13.92□□□□□ -0.18
RNF4-221ENST00000513643 ATP7BP35670 1465 aa13.92□□□□□ -0.18
RNF4-221ENST00000513643 KIF1AQ12756 1690 aa13.91□□□□□ -0.18
RNF4-221ENST00000513643 PLEKHG3A1L390 1219 aa13.91□□□□□ -0.18
RNF4-221ENST00000513643 SBNO1A3KN83 1393 aa13.91□□□□□ -0.18
RNF4-221ENST00000513643 RGPD8O14715 1765 aaPredicted RBP13.91□□□□□ -0.18
RNF4-221ENST00000513643 COL22A1Q8NFW1 1626 aaPredicted RBP13.9□□□□□ -0.18
RNF4-221ENST00000513643 XPCQ01831 940 aaPredicted RBP13.9□□□□□ -0.18
RNF4-221ENST00000513643 POTEAQ6S8J7 498 aa13.9□□□□□ -0.18
RNF4-221ENST00000513643 PHF23Q9BUL5 403 aaPredicted RBP13.9□□□□□ -0.18
RNF4-221ENST00000513643 CCDC61Q9Y6R9 512 aa13.9□□□□□ -0.18
RNF4-221ENST00000513643 RALGAPBQ86X10 1494 aa13.9□□□□□ -0.18
RNF4-221ENST00000513643 PMFBP1Q8TBY8 1022 aa13.89□□□□□ -0.19
RNF4-221ENST00000513643 POLR3AO14802 1390 aaPredicted RBP13.88□□□□□ -0.19
RNF4-221ENST00000513643 SBNO2Q9Y2G9 1366 aa13.88□□□□□ -0.19
RNF4-221ENST00000513643 PSME1Q06323 249 aa13.88□□□□□ -0.19
RNF4-221ENST00000513643 NUTM2BA6NNL0 878 aaPredicted RBP13.86□□□□□ -0.19
RNF4-221ENST00000513643 NUTM2EB1AL46 878 aaPredicted RBP13.86□□□□□ -0.19
RNF4-221ENST00000513643 NUTM2AQ8IVF1 878 aaPredicted RBP13.86□□□□□ -0.19
RNF4-221ENST00000513643 FNBP4Q8N3X1 1017 aaPredicted RBP13.86□□□□□ -0.19
RNF4-221ENST00000513643 CARD11Q9BXL7 1154 aa13.86□□□□□ -0.19
RNF4-221ENST00000513643 TNS3Q68CZ2 1445 aa13.86□□□□□ -0.19
RNF4-221ENST00000513643 SOCS7O14512 581 aa13.85□□□□□ -0.19
RNF4-221ENST00000513643 ZNF772Q68DY9 489 aaPredicted RBP13.84□□□□□ -0.19
RNF4-221ENST00000513643 CABP2Q9NPB3 220 aa13.84□□□□□ -0.19
RNF4-221ENST00000513643 ARHGEF10O15013 1369 aa13.83□□□□□ -0.19
RNF4-221ENST00000513643 TOPAZ1Q8N9V7 1692 aa13.83□□□□□ -0.2
RNF4-221ENST00000513643 TESK2Q96S53 571 aa13.83□□□□□ -0.2
RNF4-221ENST00000513643 TRPM3Q9HCF6 1732 aaPredicted RBP13.83□□□□□ -0.2
RNF4-221ENST00000513643 ACEP12821 1306 aa13.83□□□□□ -0.2
RNF4-221ENST00000513643 EVC2Q86UK5 1308 aa13.83□□□□□ -0.2
RNF4-221ENST00000513643 QRICH2Q9H0J4 1663 aa13.82□□□□□ -0.2
RNF4-221ENST00000513643 MEX3CQ5U5Q3 659 aaKnown RBP13.82□□□□□ -0.2
RNF4-221ENST00000513643 NGDNQ8NEJ9 315 aaKnown RBP13.82□□□□□ -0.2
RNF4-221ENST00000513643 PUS7Q96PZ0 661 aaKnown RBP13.82□□□□□ -0.2
RNF4-221ENST00000513643 AFF2P51816 1311 aa13.82□□□□□ -0.2
RNF4-221ENST00000513643 ADAMTS2O95450 1211 aa13.81□□□□□ -0.2
RNF4-221ENST00000513643 SRPK2P78362 688 aaKnown RBP13.81□□□□□ -0.2
RNF4-221ENST00000513643 CABP1Q9NZU7 370 aa13.81□□□□□ -0.2
RNF4-221ENST00000513643 SSH2Q76I76 1423 aa13.81□□□□□ -0.2
RNF4-221ENST00000513643 ALS2Q96Q42 1657 aa13.8□□□□□ -0.2
RNF4-221ENST00000513643 C8orf37Q96NL8 207 aa13.8□□□□□ -0.2
RNF4-221ENST00000513643 BRD4O60885 1362 aaPredicted RBP13.8□□□□□ -0.2
RNF4-221ENST00000513643 PPIP5K1Q6PFW1 1433 aa13.8□□□□□ -0.2
RNF4-221ENST00000513643 BCL9LQ86UU0 1499 aa13.8□□□□□ -0.2
RNF4-221ENST00000513643 CABLES1Q8TDN4 633 aa13.79□□□□□ -0.2
RNF4-221ENST00000513643 NGLY1Q96IV0 654 aa13.79□□□□□ -0.2
RNF4-221ENST00000513643 ITSN1Q15811 1721 aa13.78□□□□□ -0.2
RNF4-221ENST00000513643 ST20-MTHFSA0A0A6YYL1 179 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms