RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 HFM1A2PYH4 1435 aa16.79■□□□□ 0.28
DDX41-216ENST00000513562 NPHP3Q7Z494 1330 aa16.79■□□□□ 0.28
DDX41-216ENST00000513562 PXDNQ92626 1479 aa16.79■□□□□ 0.28
DDX41-216ENST00000513562 GJD4Q96KN9 370 aaPredicted RBP16.78■□□□□ 0.28
DDX41-216ENST00000513562 VGFO15240 615 aaPredicted RBP16.76■□□□□ 0.27
DDX41-216ENST00000513562 ITGAEP38570 1179 aa16.76■□□□□ 0.27
DDX41-216ENST00000513562 BLMP54132 1417 aaPredicted RBP16.76■□□□□ 0.27
DDX41-216ENST00000513562 CDC42BPGQ6DT37 1551 aa16.76■□□□□ 0.27
DDX41-216ENST00000513562 ESCO1Q5FWF5 840 aa16.74■□□□□ 0.27
DDX41-216ENST00000513562 RALGAPBQ86X10 1494 aa16.73■□□□□ 0.27
DDX41-216ENST00000513562 SLIT2O94813 1529 aa16.73■□□□□ 0.27
DDX41-216ENST00000513562 UNC5CLQ8IV45 518 aa16.72■□□□□ 0.27
DDX41-216ENST00000513562 GLI3P10071 1580 aa16.72■□□□□ 0.27
DDX41-216ENST00000513562 RPGRIP1LQ68CZ1 1315 aa16.71■□□□□ 0.27
DDX41-216ENST00000513562 FOXO3O43524 673 aa16.71■□□□□ 0.27
DDX41-216ENST00000513562 XPCQ01831 940 aaPredicted RBP16.71■□□□□ 0.27
DDX41-216ENST00000513562 LRPPRCP42704 1394 aaKnown RBP16.71■□□□□ 0.27
DDX41-216ENST00000513562 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.7■□□□□ 0.26
DDX41-216ENST00000513562 NAIPQ13075 1403 aa16.7■□□□□ 0.26
DDX41-216ENST00000513562 DEFB132Q7Z7B7 95 aa16.69■□□□□ 0.26
DDX41-216ENST00000513562 MARF1Q9Y4F3 1742 aaKnown RBP16.69■□□□□ 0.26
DDX41-216ENST00000513562 KIF1BO60333 1816 aa16.68■□□□□ 0.26
DDX41-216ENST00000513562 TECPR2O15040 1411 aa16.67■□□□□ 0.26
DDX41-216ENST00000513562 SPATA31A3Q5VYP0 1347 aa16.67■□□□□ 0.26
DDX41-216ENST00000513562 LRP5O75197 1615 aa16.67■□□□□ 0.26
DDX41-216ENST00000513562 CCDC144AA2RUR9 1427 aa16.65■□□□□ 0.26
DDX41-216ENST00000513562 SF3B2Q13435 895 aaKnown RBP16.65■□□□□ 0.26
DDX41-216ENST00000513562 SEPT12Q8IYM1 358 aa16.65■□□□□ 0.26
DDX41-216ENST00000513562 USP32Q8NFA0 1604 aa16.64■□□□□ 0.25
DDX41-216ENST00000513562 NUTM2FA1L443 756 aa16.63■□□□□ 0.25
DDX41-216ENST00000513562 VPS72Q15906 364 aa16.63■□□□□ 0.25
DDX41-216ENST00000513562 ONECUT3O60422 494 aaPredicted RBP16.62■□□□□ 0.25
DDX41-216ENST00000513562 WAPLQ7Z5K2 1190 aa16.62■□□□□ 0.25
DDX41-216ENST00000513562 PPLO60437 1756 aa16.61■□□□□ 0.25
DDX41-216ENST00000513562 ABCC11Q96J66 1382 aa16.61■□□□□ 0.25
DDX41-216ENST00000513562 PLEKHH1Q9ULM0 1364 aa16.61■□□□□ 0.25
DDX41-216ENST00000513562 TNS3Q68CZ2 1445 aa16.61■□□□□ 0.25
DDX41-216ENST00000513562 KIF1AQ12756 1690 aa16.6■□□□□ 0.25
DDX41-216ENST00000513562 ADGRF5Q8IZF2 1346 aa16.6■□□□□ 0.25
DDX41-216ENST00000513562 RRBP1Q9P2E9 1410 aaKnown RBP16.6■□□□□ 0.25
DDX41-216ENST00000513562 KRT28Q7Z3Y7 464 aa16.59■□□□□ 0.25
DDX41-216ENST00000513562 KRT27Q7Z3Y8 459 aa16.59■□□□□ 0.25
DDX41-216ENST00000513562 STK26Q9P289 416 aa16.59■□□□□ 0.25
DDX41-216ENST00000513562 BRWD3Q6RI45 1802 aa16.57■□□□□ 0.24
DDX41-216ENST00000513562 FMN2Q9NZ56 1722 aa16.57■□□□□ 0.24
DDX41-216ENST00000513562 HRCP23327 699 aa16.57■□□□□ 0.24
DDX41-216ENST00000513562 SLC4A1APQ9BWU0 796 aaKnown RBP16.57■□□□□ 0.24
DDX41-216ENST00000513562 PSDA5PKW4 1024 aaPredicted RBP16.56■□□□□ 0.24
DDX41-216ENST00000513562 BAG6P46379 1132 aa16.56■□□□□ 0.24
DDX41-216ENST00000513562 HAP1P54257 671 aaPredicted RBP16.56■□□□□ 0.24
DDX41-216ENST00000513562 CABLES1Q8TDN4 633 aa16.56■□□□□ 0.24
DDX41-216ENST00000513562 SBNO1A3KN83 1393 aa16.55■□□□□ 0.24
DDX41-216ENST00000513562 CCDC9Q9Y3X0 531 aaKnown RBP16.55■□□□□ 0.24
DDX41-216ENST00000513562 KNDC1Q76NI1 1749 aa16.55■□□□□ 0.24
DDX41-216ENST00000513562 PIK3C2GO75747 1445 aa16.54■□□□□ 0.24
DDX41-216ENST00000513562 SPATA31E1Q6ZUB1 1445 aa16.54■□□□□ 0.24
DDX41-216ENST00000513562 ANKRD30BQ9BXX2 1392 aa16.54■□□□□ 0.24
DDX41-216ENST00000513562 NWD2Q9ULI1 1742 aa16.54■□□□□ 0.24
DDX41-216ENST00000513562 PSME1Q06323 249 aa16.54■□□□□ 0.24
DDX41-216ENST00000513562 TMEM132EQ6IEE7 984 aa16.54■□□□□ 0.24
DDX41-216ENST00000513562 PHF8Q9UPP1 1060 aa16.54■□□□□ 0.24
DDX41-216ENST00000513562 YTHDC2Q9H6S0 1430 aaKnown RBP16.53■□□□□ 0.24
DDX41-216ENST00000513562 ARHGEF10O15013 1369 aa16.53■□□□□ 0.24
DDX41-216ENST00000513562 PLCH1Q4KWH8 1693 aa16.53■□□□□ 0.24
DDX41-216ENST00000513562 PPARGC1BQ86YN6 1023 aaKnown RBP16.53■□□□□ 0.24
DDX41-216ENST00000513562 NRXN1Q9ULB1 1477 aa16.53■□□□□ 0.24
DDX41-216ENST00000513562 SIRT1Q96EB6 747 aa16.52■□□□□ 0.24
DDX41-216ENST00000513562 FAM83GA6ND36 823 aa16.51■□□□□ 0.23
DDX41-216ENST00000513562 RGL3Q3MIN7 710 aa16.5■□□□□ 0.23
DDX41-216ENST00000513562 ABCA3Q99758 1704 aa16.5■□□□□ 0.23
DDX41-216ENST00000513562 A0A0G2JS52 829 aa16.49■□□□□ 0.23
DDX41-216ENST00000513562 DISP2A7MBM2 1401 aa16.49■□□□□ 0.23
DDX41-216ENST00000513562 PLEKHG5O94827 1062 aa16.49■□□□□ 0.23
DDX41-216ENST00000513562 MYT1Q01538 1121 aa16.49■□□□□ 0.23
DDX41-216ENST00000513562 FAM98CQ17RN3 349 aaKnown RBP16.49■□□□□ 0.23
DDX41-216ENST00000513562 EN1Q05925 392 aaPredicted RBP16.48■□□□□ 0.23
DDX41-216ENST00000513562 LMOD2Q6P5Q4 547 aa16.48■□□□□ 0.23
DDX41-216ENST00000513562 NRAPQ86VF7 1730 aa16.48■□□□□ 0.23
DDX41-216ENST00000513562 IFT172Q9UG01 1749 aa16.48■□□□□ 0.23
DDX41-216ENST00000513562 R3HDM1Q15032 1099 aaKnown RBP16.46■□□□□ 0.23
DDX41-216ENST00000513562 BTG4Q9NY30 223 aa16.46■□□□□ 0.23
DDX41-216ENST00000513562 ANKARQ7Z5J8 1434 aa16.45■□□□□ 0.22
DDX41-216ENST00000513562 C14orf93Q9H972 538 aaKnown RBP16.44■□□□□ 0.22
DDX41-216ENST00000513562 SPATA31A5Q5VU36 1347 aa16.44■□□□□ 0.22
DDX41-216ENST00000513562 SPATA31A7Q8IWB4 1347 aa16.44■□□□□ 0.22
DDX41-216ENST00000513562 RGPD1P0DJD0 1748 aa16.43■□□□□ 0.22
DDX41-216ENST00000513562 FAM182BQ5T319 152 aa16.43■□□□□ 0.22
DDX41-216ENST00000513562 PMFBP1Q8TBY8 1022 aa16.42■□□□□ 0.22
DDX41-216ENST00000513562 PRAM1Q96QH2 718 aa16.42■□□□□ 0.22
DDX41-216ENST00000513562 THSD7AQ9UPZ6 1657 aa16.42■□□□□ 0.22
DDX41-216ENST00000513562 COL14A1Q05707 1796 aaKnown RBP16.41■□□□□ 0.22
DDX41-216ENST00000513562 DHX57Q6P158 1386 aaKnown RBP16.41■□□□□ 0.22
DDX41-216ENST00000513562 TRPM3Q9HCF6 1732 aaPredicted RBP16.4■□□□□ 0.22
DDX41-216ENST00000513562 SAFB2Q14151 953 aaKnown RBP eCLIP16.4■□□□□ 0.22
DDX41-216ENST00000513562 EZH2Q15910 746 aaKnown RBP16.4■□□□□ 0.22
DDX41-216ENST00000513562 DLC1Q96QB1 1528 aa16.4■□□□□ 0.22
DDX41-216ENST00000513562 TNS1Q9HBL0 1735 aaKnown RBP16.39■□□□□ 0.21
DDX41-216ENST00000513562 ADGRB2O60241 1585 aa16.39■□□□□ 0.21
DDX41-216ENST00000513562 RGPD8O14715 1765 aaPredicted RBP16.39■□□□□ 0.21
DDX41-216ENST00000513562 CFAP70Q5T0N1 1121 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms