RNA–Protein interactions for RNA: ENST00000512258.1

MSH3-202, Transcript of mutS homolog 3, humanhuman

TSL 3

Gene MSH3, Length 677 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-202ENST00000512258 RNF19BQ6ZMZ0 732 aa10□□□□□ -0.81
MSH3-202ENST00000512258 SNIP1Q8TAD8 396 aaKnown RBP10□□□□□ -0.81
MSH3-202ENST00000512258 GCGRP47871 477 aa9.99□□□□□ -0.81
MSH3-202ENST00000512258 RDH13Q8NBN7 331 aa9.99□□□□□ -0.81
MSH3-202ENST00000512258 NLRP7Q8WX94 980 aa9.99□□□□□ -0.81
MSH3-202ENST00000512258 SEMA3EO15041 775 aa9.98□□□□□ -0.81
MSH3-202ENST00000512258 TSHZ2Q9NRE2 1034 aa9.98□□□□□ -0.81
MSH3-202ENST00000512258 DDX11L8A8MPP1 907 aa9.97□□□□□ -0.81
MSH3-202ENST00000512258 GPR37O15354 613 aa9.97□□□□□ -0.81
MSH3-202ENST00000512258 TRIM32Q13049 653 aa9.97□□□□□ -0.81
MSH3-202ENST00000512258 MRGPRX2Q96LB1 330 aa9.97□□□□□ -0.81
MSH3-202ENST00000512258 LORP23490 312 aaPredicted RBP9.96□□□□□ -0.82
MSH3-202ENST00000512258 HPS1Q92902 700 aa9.96□□□□□ -0.82
MSH3-202ENST00000512258 PHOX2BQ99453 314 aa9.96□□□□□ -0.82
MSH3-202ENST00000512258 ZBTB24O43167 697 aaPredicted RBP9.94□□□□□ -0.82
MSH3-202ENST00000512258 MMP16P51512 607 aa9.94□□□□□ -0.82
MSH3-202ENST00000512258 SENP2Q9HC62 589 aa9.94□□□□□ -0.82
MSH3-202ENST00000512258 LOC100996750A0A140TA64 210 aa9.93□□□□□ -0.82
MSH3-202ENST00000512258 KRTAP4-6Q9BYQ5 205 aa9.93□□□□□ -0.82
MSH3-202ENST00000512258 GNPATO15228 680 aa9.92□□□□□ -0.82
MSH3-202ENST00000512258 RBM26Q5T8P6 1007 aaKnown RBP9.91□□□□□ -0.82
MSH3-202ENST00000512258 DCAF1Q9Y4B6 1507 aa9.91□□□□□ -0.82
MSH3-202ENST00000512258 SKOR1P84550 965 aa9.9□□□□□ -0.82
MSH3-202ENST00000512258 NACADO15069 1562 aa9.89□□□□□ -0.83
MSH3-202ENST00000512258 DXOO77932 396 aaKnown RBP9.88□□□□□ -0.83
MSH3-202ENST00000512258 KIFC2Q96AC6 838 aa9.88□□□□□ -0.83
MSH3-202ENST00000512258 SULF1Q8IWU6 871 aa9.87□□□□□ -0.83
MSH3-202ENST00000512258 RB1CC1Q8TDY2 1594 aa9.87□□□□□ -0.83
MSH3-202ENST00000512258 MYO15BQ96JP2 1530 aa9.87□□□□□ -0.83
MSH3-202ENST00000512258 RC3H1Q5TC82 1133 aaKnown RBP9.86□□□□□ -0.83
MSH3-202ENST00000512258 REPIN1Q9BWE0 567 aaKnown RBP9.86□□□□□ -0.83
MSH3-202ENST00000512258 TESPA1A2RU30 521 aaPredicted RBP9.85□□□□□ -0.83
MSH3-202ENST00000512258 GMPRP36959 345 aa9.85□□□□□ -0.83
MSH3-202ENST00000512258 TRIM46Q7Z4K8 759 aa9.83□□□□□ -0.84
MSH3-202ENST00000512258 NXF1Q9UBU9 619 aaKnown RBP9.83□□□□□ -0.84
MSH3-202ENST00000512258 Q3C1V9 767 aa9.82□□□□□ -0.84
MSH3-202ENST00000512258 USB1Q9BQ65 265 aaKnown RBP9.82□□□□□ -0.84
MSH3-202ENST00000512258 WNT7BP56706 349 aa9.81□□□□□ -0.84
MSH3-202ENST00000512258 GRIPAP1Q4V328 841 aa9.81□□□□□ -0.84
MSH3-202ENST00000512258 P3H3Q8IVL6 736 aa9.81□□□□□ -0.84
MSH3-202ENST00000512258 SIAH2O43255 324 aa9.8□□□□□ -0.84
MSH3-202ENST00000512258 CD46P15529 392 aa9.8□□□□□ -0.84
MSH3-202ENST00000512258 ZSCAN1Q8NBB4 408 aa9.8□□□□□ -0.84
MSH3-202ENST00000512258 HLA-CQ95604 372 aa9.8□□□□□ -0.84
MSH3-202ENST00000512258 BMP1P13497 986 aa9.79□□□□□ -0.84
MSH3-202ENST00000512258 SLC16A10Q8TF71 515 aa9.79□□□□□ -0.84
MSH3-202ENST00000512258 ERBB4Q15303 1308 aa9.79□□□□□ -0.84
MSH3-202ENST00000512258 NPAS3Q8IXF0 933 aa9.78□□□□□ -0.84
MSH3-202ENST00000512258 RTN4Q9NQC3 1192 aaKnown RBP9.78□□□□□ -0.84
MSH3-202ENST00000512258 FAM181BA6NEQ2 426 aa9.77□□□□□ -0.85
MSH3-202ENST00000512258 ALDH1A1P00352 501 aa9.77□□□□□ -0.85
MSH3-202ENST00000512258 VEGFBP49765 207 aa9.77□□□□□ -0.85
MSH3-202ENST00000512258 H3BM21 787 aa9.76□□□□□ -0.85
MSH3-202ENST00000512258 AMER1Q5JTC6 1135 aaPredicted RBP9.76□□□□□ -0.85
MSH3-202ENST00000512258 CCDC24Q8N4L8 307 aa9.76□□□□□ -0.85
MSH3-202ENST00000512258 IRF7Q92985 503 aa9.75□□□□□ -0.85
MSH3-202ENST00000512258 KDM4AO75164 1064 aa9.74□□□□□ -0.85
MSH3-202ENST00000512258 PTCRAQ6ISU1 281 aaPredicted RBP9.73□□□□□ -0.85
MSH3-202ENST00000512258 SCRIBQ14160 1630 aa9.73□□□□□ -0.85
MSH3-202ENST00000512258 CAPN5O15484 640 aaPredicted RBP9.71□□□□□ -0.86
MSH3-202ENST00000512258 JUNDP17535 347 aa9.71□□□□□ -0.86
MSH3-202ENST00000512258 HOXA2O43364 376 aa9.7□□□□□ -0.86
MSH3-202ENST00000512258 GUCA2AQ02747 115 aa9.7□□□□□ -0.86
MSH3-202ENST00000512258 SHROOM4Q9ULL8 1493 aa9.7□□□□□ -0.86
MSH3-202ENST00000512258 SMYD5Q6GMV2 418 aa9.69□□□□□ -0.86
MSH3-202ENST00000512258 SYMPKQ92797 1274 aaKnown RBP9.69□□□□□ -0.86
MSH3-202ENST00000512258 UNC13AQ9UPW8 1703 aa9.69□□□□□ -0.86
MSH3-202ENST00000512258 USP46P62068 366 aa9.68□□□□□ -0.86
MSH3-202ENST00000512258 ZFP42Q96MM3 310 aa9.68□□□□□ -0.86
MSH3-202ENST00000512258 EHBP1Q8NDI1 1231 aa9.67□□□□□ -0.86
MSH3-202ENST00000512258 SH3BP2P78314 561 aa9.66□□□□□ -0.86
MSH3-202ENST00000512258 GSK3AP49840 483 aa9.65□□□□□ -0.86
MSH3-202ENST00000512258 NUDT12Q9BQG2 462 aa9.65□□□□□ -0.86
MSH3-202ENST00000512258 WASF2Q9Y6W5 498 aa9.65□□□□□ -0.86
MSH3-202ENST00000512258 SUZ12Q15022 739 aaKnown RBP9.64□□□□□ -0.87
MSH3-202ENST00000512258 VSIG8P0DPA2 414 aa9.63□□□□□ -0.87
MSH3-202ENST00000512258 GPIHBP1Q8IV16 184 aa9.63□□□□□ -0.87
MSH3-202ENST00000512258 BICRAQ9NZM4 1560 aa9.62□□□□□ -0.87
MSH3-202ENST00000512258 MDM2Q00987 491 aaPredicted RBP9.61□□□□□ -0.87
MSH3-202ENST00000512258 RETREG3Q86VR2 466 aa9.61□□□□□ -0.87
MSH3-202ENST00000512258 TLL2Q9Y6L7 1015 aa9.61□□□□□ -0.87
MSH3-202ENST00000512258 MAP2K5Q13163 448 aa9.6□□□□□ -0.87
MSH3-202ENST00000512258 SOBPA7XYQ1 873 aa9.59□□□□□ -0.87
MSH3-202ENST00000512258 PCDHGC3Q9UN70 934 aa9.59□□□□□ -0.87
MSH3-202ENST00000512258 MRPL14Q6P1L8 145 aaKnown RBP9.58□□□□□ -0.88
MSH3-202ENST00000512258 KLF16Q9BXK1 252 aaPredicted RBP9.58□□□□□ -0.88
MSH3-202ENST00000512258 IRF6O14896 467 aa9.57□□□□□ -0.88
MSH3-202ENST00000512258 TIMP2P16035 220 aa9.57□□□□□ -0.88
MSH3-202ENST00000512258 KCNMA1Q12791 1236 aa9.57□□□□□ -0.88
MSH3-202ENST00000512258 CCNYL3P0C7X3 344 aa9.56□□□□□ -0.88
MSH3-202ENST00000512258 NNTQ13423 1086 aa9.56□□□□□ -0.88
MSH3-202ENST00000512258 MPNDQ8N594 471 aa9.56□□□□□ -0.88
MSH3-202ENST00000512258 PURBQ96QR8 312 aaKnown RBP9.56□□□□□ -0.88
MSH3-202ENST00000512258 UNC93B1Q9H1C4 597 aa9.56□□□□□ -0.88
MSH3-202ENST00000512258 LINC01559Q495D7 138 aa9.55□□□□□ -0.88
MSH3-202ENST00000512258 FAM217BQ9NTX9 383 aaPredicted RBP9.55□□□□□ -0.88
MSH3-202ENST00000512258 MS4A1P11836 297 aa9.54□□□□□ -0.88
MSH3-202ENST00000512258 BAP1Q92560 729 aa9.54□□□□□ -0.88
MSH3-202ENST00000512258 EVA1BQ9NVM1 165 aa9.54□□□□□ -0.88
MSH3-202ENST00000512258 KCTD17Q8N5Z5 321 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms