RNA–Protein interactions for RNA: ENST00000511263.1

HMGB3P13-201, Transcript of high mobility group box 3 pseudogene 13, humanhuman

BASIC

Gene HMGB3P13, Length 607 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P13-201ENST00000511263 ATP6V1AP38606 617 aa9.24□□□□□ -0.93
HMGB3P13-201ENST00000511263 RPIAP49247 311 aa9.23□□□□□ -0.93
HMGB3P13-201ENST00000511263 TTLL12Q14166 644 aaPredicted RBP9.23□□□□□ -0.93
HMGB3P13-201ENST00000511263 GPCPD1Q9NPB8 672 aa9.23□□□□□ -0.93
HMGB3P13-201ENST00000511263 GCGRP47871 477 aa9.22□□□□□ -0.93
HMGB3P13-201ENST00000511263 AMHR2Q16671 573 aa9.22□□□□□ -0.93
HMGB3P13-201ENST00000511263 TOR4AQ9NXH8 423 aa9.22□□□□□ -0.93
HMGB3P13-201ENST00000511263 FMNL1O95466 1100 aaPredicted RBP9.21□□□□□ -0.94
HMGB3P13-201ENST00000511263 RNF19BQ6ZMZ0 732 aa9.21□□□□□ -0.94
HMGB3P13-201ENST00000511263 TRIM66O15016 1216 aa9.2□□□□□ -0.94
HMGB3P13-201ENST00000511263 BRICD5Q6PL45 260 aa9.2□□□□□ -0.94
HMGB3P13-201ENST00000511263 MDM2Q00987 491 aaPredicted RBP9.19□□□□□ -0.94
HMGB3P13-201ENST00000511263 CD2BP2O95400 341 aaKnown RBP9.18□□□□□ -0.94
HMGB3P13-201ENST00000511263 LCE2AQ5TA79 106 aaPredicted RBP9.18□□□□□ -0.94
HMGB3P13-201ENST00000511263 AVPP01185 164 aa9.17□□□□□ -0.94
HMGB3P13-201ENST00000511263 CYP4X1Q8N118 509 aa9.17□□□□□ -0.94
HMGB3P13-201ENST00000511263 CRIPAKQ8N1N5 446 aa9.17□□□□□ -0.94
HMGB3P13-201ENST00000511263 PDE4DQ08499 809 aa9.16□□□□□ -0.94
HMGB3P13-201ENST00000511263 TREML4Q6UXN2 200 aa9.16□□□□□ -0.94
HMGB3P13-201ENST00000511263 GMPR2Q9P2T1 348 aaKnown RBP9.16□□□□□ -0.94
HMGB3P13-201ENST00000511263 SALL2Q9Y467 1007 aaPredicted RBP9.16□□□□□ -0.94
HMGB3P13-201ENST00000511263 DIXDC1Q155Q3 683 aa9.15□□□□□ -0.94
HMGB3P13-201ENST00000511263 GRIPAP1Q4V328 841 aa9.15□□□□□ -0.94
HMGB3P13-201ENST00000511263 MSS51Q4VC12 460 aa9.15□□□□□ -0.94
HMGB3P13-201ENST00000511263 AXIN1O15169 862 aa9.14□□□□□ -0.95
HMGB3P13-201ENST00000511263 TTC24A2A3L6 582 aaPredicted RBP9.12□□□□□ -0.95
HMGB3P13-201ENST00000511263 GIGYF2Q6Y7W6 1299 aaKnown RBP9.12□□□□□ -0.95
HMGB3P13-201ENST00000511263 FAM217BQ9NTX9 383 aaPredicted RBP9.12□□□□□ -0.95
HMGB3P13-201ENST00000511263 ZBTB24O43167 697 aaPredicted RBP9.11□□□□□ -0.95
HMGB3P13-201ENST00000511263 SSTR3P32745 418 aaPredicted RBP9.11□□□□□ -0.95
HMGB3P13-201ENST00000511263 HLA-CQ95604 372 aa9.11□□□□□ -0.95
HMGB3P13-201ENST00000511263 C11orf95C9JLR9 678 aaPredicted RBP9.1□□□□□ -0.95
HMGB3P13-201ENST00000511263 WNT7AO00755 349 aa9.1□□□□□ -0.95
HMGB3P13-201ENST00000511263 CD46P15529 392 aa9.1□□□□□ -0.95
HMGB3P13-201ENST00000511263 SMPD1P17405 629 aa9.1□□□□□ -0.95
HMGB3P13-201ENST00000511263 USP46P62068 366 aa9.1□□□□□ -0.95
HMGB3P13-201ENST00000511263 TRIM32Q13049 653 aa9.1□□□□□ -0.95
HMGB3P13-201ENST00000511263 PARP9Q8IXQ6 854 aa9.1□□□□□ -0.95
HMGB3P13-201ENST00000511263 SMCPP49901 116 aaPredicted RBP9.09□□□□□ -0.95
HMGB3P13-201ENST00000511263 MMP16P51512 607 aa9.09□□□□□ -0.95
HMGB3P13-201ENST00000511263 NEUROD2Q15784 382 aa9.09□□□□□ -0.95
HMGB3P13-201ENST00000511263 CTC1Q2NKJ3 1217 aa9.09□□□□□ -0.95
HMGB3P13-201ENST00000511263 NUTM1Q86Y26 1132 aa9.09□□□□□ -0.95
HMGB3P13-201ENST00000511263 J3QL48 77 aa9.08□□□□□ -0.96
HMGB3P13-201ENST00000511263 DDRGK1Q96HY6 314 aa9.08□□□□□ -0.96
HMGB3P13-201ENST00000511263 MRGPRX2Q96LB1 330 aa9.08□□□□□ -0.96
HMGB3P13-201ENST00000511263 PRKCSHP14314 528 aaPredicted RBP9.07□□□□□ -0.96
HMGB3P13-201ENST00000511263 KDM4AO75164 1064 aa9.06□□□□□ -0.96
HMGB3P13-201ENST00000511263 DXOO77932 396 aaKnown RBP9.06□□□□□ -0.96
HMGB3P13-201ENST00000511263 Q3C1V9 767 aa9.06□□□□□ -0.96
HMGB3P13-201ENST00000511263 SNIP1Q8TAD8 396 aaKnown RBP9.06□□□□□ -0.96
HMGB3P13-201ENST00000511263 RSPH6AQ9H0K4 717 aa9.06□□□□□ -0.96
HMGB3P13-201ENST00000511263 WFS1O76024 890 aa9.05□□□□□ -0.96
HMGB3P13-201ENST00000511263 NFX1Q12986 1120 aaKnown RBP9.05□□□□□ -0.96
HMGB3P13-201ENST00000511263 USB1Q9BQ65 265 aaKnown RBP9.05□□□□□ -0.96
HMGB3P13-201ENST00000511263 KDM4CQ9H3R0 1056 aa9.05□□□□□ -0.96
HMGB3P13-201ENST00000511263 SNRPBP14678 240 aaKnown RBP9.04□□□□□ -0.96
HMGB3P13-201ENST00000511263 SKOR1P84550 965 aa9.04□□□□□ -0.96
HMGB3P13-201ENST00000511263 GUCA2AQ02747 115 aa9.04□□□□□ -0.96
HMGB3P13-201ENST00000511263 LCE2CQ5TA81 110 aa9.04□□□□□ -0.96
HMGB3P13-201ENST00000511263 HPS1Q92902 700 aa9.04□□□□□ -0.96
HMGB3P13-201ENST00000511263 BEGAINQ9BUH8 593 aa9.04□□□□□ -0.96
HMGB3P13-201ENST00000511263 ATP13A2Q9NQ11 1180 aa9.04□□□□□ -0.96
HMGB3P13-201ENST00000511263 CCDC24Q8N4L8 307 aa9.03□□□□□ -0.96
HMGB3P13-201ENST00000511263 SYMPKQ92797 1274 aaKnown RBP9.02□□□□□ -0.97
HMGB3P13-201ENST00000511263 REPIN1Q9BWE0 567 aaKnown RBP9.02□□□□□ -0.97
HMGB3P13-201ENST00000511263 HOXA2O43364 376 aa9.01□□□□□ -0.97
HMGB3P13-201ENST00000511263 RC3H1Q5TC82 1133 aaKnown RBP9□□□□□ -0.97
HMGB3P13-201ENST00000511263 MS4A1P11836 297 aa8.99□□□□□ -0.97
HMGB3P13-201ENST00000511263 BRPF1P55201 1214 aaPredicted RBP8.99□□□□□ -0.97
HMGB3P13-201ENST00000511263 GPBP1L1Q9HC44 474 aaPredicted RBP8.99□□□□□ -0.97
HMGB3P13-201ENST00000511263 GJA5P36382 358 aa8.98□□□□□ -0.97
HMGB3P13-201ENST00000511263 TRIM47Q96LD4 638 aa8.98□□□□□ -0.97
HMGB3P13-201ENST00000511263 PTCRAQ6ISU1 281 aaPredicted RBP8.96□□□□□ -0.98
HMGB3P13-201ENST00000511263 SPIRE2Q8WWL2 714 aa8.96□□□□□ -0.98
HMGB3P13-201ENST00000511263 ATP1B4Q9UN42 357 aaPredicted RBP8.96□□□□□ -0.98
HMGB3P13-201ENST00000511263 JUNDP17535 347 aa8.95□□□□□ -0.98
HMGB3P13-201ENST00000511263 WNT7BP56706 349 aa8.95□□□□□ -0.98
HMGB3P13-201ENST00000511263 TBC1D2Q9BYX2 928 aa8.95□□□□□ -0.98
HMGB3P13-201ENST00000511263 SPDYE5A6NIY4 337 aa8.94□□□□□ -0.98
HMGB3P13-201ENST00000511263 TERTO14746 1132 aaKnown RBP8.94□□□□□ -0.98
HMGB3P13-201ENST00000511263 WIPF1O43516 503 aa8.94□□□□□ -0.98
HMGB3P13-201ENST00000511263 ALDH1A1P00352 501 aa8.94□□□□□ -0.98
HMGB3P13-201ENST00000511263 FDX1P10109 184 aa8.93□□□□□ -0.98
HMGB3P13-201ENST00000511263 GOPCQ9HD26 462 aa8.93□□□□□ -0.98
HMGB3P13-201ENST00000511263 FAM117AQ9C073 453 aa8.92□□□□□ -0.98
HMGB3P13-201ENST00000511263 SENP2Q9HC62 589 aa8.92□□□□□ -0.98
HMGB3P13-201ENST00000511263 PCDHGC3Q9UN70 934 aa8.92□□□□□ -0.98
HMGB3P13-201ENST00000511263 SIAH2O43255 324 aa8.91□□□□□ -0.98
HMGB3P13-201ENST00000511263 SKIV2LQ15477 1246 aaKnown RBP8.91□□□□□ -0.98
HMGB3P13-201ENST00000511263 TUSC1Q2TAM9 212 aa8.91□□□□□ -0.98
HMGB3P13-201ENST00000511263 SH3D19Q5HYK7 790 aa8.91□□□□□ -0.98
HMGB3P13-201ENST00000511263 RIC3Q7Z5B4 369 aa8.91□□□□□ -0.98
HMGB3P13-201ENST00000511263 NUDT12Q9BQG2 462 aa8.91□□□□□ -0.98
HMGB3P13-201ENST00000511263 BMP1P13497 986 aa8.9□□□□□ -0.98
HMGB3P13-201ENST00000511263 CLK2P49760 499 aaKnown RBP8.9□□□□□ -0.98
HMGB3P13-201ENST00000511263 RETREG3Q86VR2 466 aa8.9□□□□□ -0.98
HMGB3P13-201ENST00000511263 IL27Q8NEV9 243 aa8.9□□□□□ -0.98
HMGB3P13-201ENST00000511263 PCMTD1Q96MG8 357 aaPredicted RBP8.9□□□□□ -0.98
HMGB3P13-201ENST00000511263 STK17AQ9UEE5 414 aa8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms