RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 RPIAP49247 311 aa17.01■□□□□ 0.31
USP53-206ENST00000510737 Q3C1V9 767 aa17■□□□□ 0.31
USP53-206ENST00000510737 MMP16P51512 607 aa16.99■□□□□ 0.31
USP53-206ENST00000510737 USP46P62068 366 aa16.99■□□□□ 0.31
USP53-206ENST00000510737 MYT1Q01538 1121 aa16.98■□□□□ 0.31
USP53-206ENST00000510737 FOXC1Q12948 553 aa16.98■□□□□ 0.31
USP53-206ENST00000510737 KRI1Q8N9T8 703 aaKnown RBP16.97■□□□□ 0.31
USP53-206ENST00000510737 USB1Q9BQ65 265 aaKnown RBP16.97■□□□□ 0.31
USP53-206ENST00000510737 DGAT1O75907 488 aa16.95■□□□□ 0.3
USP53-206ENST00000510737 PKDCCQ504Y2 493 aa16.95■□□□□ 0.3
USP53-206ENST00000510737 SYMPKQ92797 1274 aaKnown RBP16.95■□□□□ 0.3
USP53-206ENST00000510737 FAM187AA6NFU0 413 aa16.94■□□□□ 0.3
USP53-206ENST00000510737 DXOO77932 396 aaKnown RBP16.93■□□□□ 0.3
USP53-206ENST00000510737 CD2BP2O95400 341 aaKnown RBP16.91■□□□□ 0.3
USP53-206ENST00000510737 SSTR3P32745 418 aaPredicted RBP16.91■□□□□ 0.3
USP53-206ENST00000510737 AMHR2Q16671 573 aa16.89■□□□□ 0.29
USP53-206ENST00000510737 PCDHGC3Q9UN70 934 aa16.89■□□□□ 0.29
USP53-206ENST00000510737 TOR4AQ9NXH8 423 aa16.88■□□□□ 0.29
USP53-206ENST00000510737 ZNF787Q6DD87 383 aa16.87■□□□□ 0.29
USP53-206ENST00000510737 NUTM1Q86Y26 1132 aa16.87■□□□□ 0.29
USP53-206ENST00000510737 SPIRE2Q8WWL2 714 aa16.85■□□□□ 0.29
USP53-206ENST00000510737 POTECB2RU33 542 aa16.84■□□□□ 0.29
USP53-206ENST00000510737 ST8SIA5O15466 376 aa16.84■□□□□ 0.29
USP53-206ENST00000510737 TRIM32Q13049 653 aa16.84■□□□□ 0.29
USP53-206ENST00000510737 TTLL12Q14166 644 aaPredicted RBP16.84■□□□□ 0.29
USP53-206ENST00000510737 GIGYF2Q6Y7W6 1299 aaKnown RBP16.84■□□□□ 0.29
USP53-206ENST00000510737 ZBTB24O43167 697 aaPredicted RBP16.83■□□□□ 0.28
USP53-206ENST00000510737 FDX1P10109 184 aa16.81■□□□□ 0.28
USP53-206ENST00000510737 NDUFV2P19404 249 aa16.81■□□□□ 0.28
USP53-206ENST00000510737 AAASQ9NRG9 546 aa16.8■□□□□ 0.28
USP53-206ENST00000510737 JUNDP17535 347 aa16.79■□□□□ 0.28
USP53-206ENST00000510737 CCDC24Q8N4L8 307 aa16.79■□□□□ 0.28
USP53-206ENST00000510737 MOXD2PA6NHM9 499 aa16.78■□□□□ 0.28
USP53-206ENST00000510737 RETREG3Q86VR2 466 aa16.78■□□□□ 0.28
USP53-206ENST00000510737 PARP9Q8IXQ6 854 aa16.78■□□□□ 0.28
USP53-206ENST00000510737 TRIM66O15016 1216 aa16.77■□□□□ 0.28
USP53-206ENST00000510737 CYP4X1Q8N118 509 aa16.77■□□□□ 0.28
USP53-206ENST00000510737 WNT7AO00755 349 aa16.76■□□□□ 0.27
USP53-206ENST00000510737 SKOR1P84550 965 aa16.74■□□□□ 0.27
USP53-206ENST00000510737 PTCRAQ6ISU1 281 aaPredicted RBP16.74■□□□□ 0.27
USP53-206ENST00000510737 BEGAINQ9BUH8 593 aa16.74■□□□□ 0.27
USP53-206ENST00000510737 DACH1Q9UI36 760 aa16.74■□□□□ 0.27
USP53-206ENST00000510737 C6orf229H3BNL8 230 aa16.73■□□□□ 0.27
USP53-206ENST00000510737 AVPP01185 164 aa16.73■□□□□ 0.27
USP53-206ENST00000510737 MS4A1P11836 297 aa16.73■□□□□ 0.27
USP53-206ENST00000510737 MRGPRX2Q96LB1 330 aa16.73■□□□□ 0.27
USP53-206ENST00000510737 SMPD1P17405 629 aa16.7■□□□□ 0.26
USP53-206ENST00000510737 CRIPAKQ8N1N5 446 aa16.7■□□□□ 0.26
USP53-206ENST00000510737 ZNF775Q96BV0 537 aaPredicted RBP16.69■□□□□ 0.26
USP53-206ENST00000510737 AK7Q96M32 723 aa16.68■□□□□ 0.26
USP53-206ENST00000510737 NUDT12Q9BQG2 462 aa16.68■□□□□ 0.26
USP53-206ENST00000510737 TTC24A2A3L6 582 aaPredicted RBP16.67■□□□□ 0.26
USP53-206ENST00000510737 SNIP1Q8TAD8 396 aaKnown RBP16.67■□□□□ 0.26
USP53-206ENST00000510737 TBC1D2Q9BYX2 928 aa16.67■□□□□ 0.26
USP53-206ENST00000510737 J3QL48 77 aa16.66■□□□□ 0.26
USP53-206ENST00000510737 RC3H1Q5TC82 1133 aaKnown RBP16.65■□□□□ 0.26
USP53-206ENST00000510737 PRR7Q8TB68 274 aa16.63■□□□□ 0.25
USP53-206ENST00000510737 PCDHB15Q9Y5E8 787 aa16.63■□□□□ 0.25
USP53-206ENST00000510737 WNT7BP56706 349 aa16.62■□□□□ 0.25
USP53-206ENST00000510737 RSBN1LQ6PCB5 846 aaPredicted RBP16.62■□□□□ 0.25
USP53-206ENST00000510737 SMCPP49901 116 aaPredicted RBP16.6■□□□□ 0.25
USP53-206ENST00000510737 MTMR2Q13614 643 aa16.6■□□□□ 0.25
USP53-206ENST00000510737 SLC24A3Q9HC58 644 aa16.6■□□□□ 0.25
USP53-206ENST00000510737 AXIN1O15169 862 aa16.59■□□□□ 0.25
USP53-206ENST00000510737 CCNYL3P0C7X3 344 aa16.59■□□□□ 0.25
USP53-206ENST00000510737 PDE4DQ08499 809 aa16.58■□□□□ 0.24
USP53-206ENST00000510737 PTPRNQ16849 979 aa16.58■□□□□ 0.24
USP53-206ENST00000510737 CTC1Q2NKJ3 1217 aa16.57■□□□□ 0.24
USP53-206ENST00000510737 SPTLC1O15269 473 aa16.56■□□□□ 0.24
USP53-206ENST00000510737 GJA5P36382 358 aa16.56■□□□□ 0.24
USP53-206ENST00000510737 HPS1Q92902 700 aa16.56■□□□□ 0.24
USP53-206ENST00000510737 EVA1BQ9NVM1 165 aa16.56■□□□□ 0.24
USP53-206ENST00000510737 GMPR2Q9P2T1 348 aaKnown RBP16.56■□□□□ 0.24
USP53-206ENST00000510737 CFAP99D6REC4 459 aa16.54■□□□□ 0.24
USP53-206ENST00000510737 SIAH2O43255 324 aa16.54■□□□□ 0.24
USP53-206ENST00000510737 SH3BP2P78314 561 aa16.54■□□□□ 0.24
USP53-206ENST00000510737 DESI1Q6ICB0 168 aa16.53■□□□□ 0.24
USP53-206ENST00000510737 UNC93B1Q9H1C4 597 aa16.53■□□□□ 0.24
USP53-206ENST00000510737 SPDYE5A6NIY4 337 aa16.52■□□□□ 0.24
USP53-206ENST00000510737 HRCP23327 699 aa16.51■□□□□ 0.23
USP53-206ENST00000510737 KCNH2Q12809 1159 aa16.51■□□□□ 0.23
USP53-206ENST00000510737 RIC3Q7Z5B4 369 aa16.51■□□□□ 0.23
USP53-206ENST00000510737 CABLES1Q8TDN4 633 aa16.51■□□□□ 0.23
USP53-206ENST00000510737 DIXDC1Q155Q3 683 aa16.5■□□□□ 0.23
USP53-206ENST00000510737 LINC01559Q495D7 138 aa16.49■□□□□ 0.23
USP53-206ENST00000510737 BAP1Q92560 729 aa16.49■□□□□ 0.23
USP53-206ENST00000510737 LIMD1Q9UGP4 676 aa16.49■□□□□ 0.23
USP53-206ENST00000510737 ALDH1A1P00352 501 aa16.48■□□□□ 0.23
USP53-206ENST00000510737 MYSM1Q5VVJ2 828 aa16.47■□□□□ 0.23
USP53-206ENST00000510737 EHBP1Q8NDI1 1231 aa16.47■□□□□ 0.23
USP53-206ENST00000510737 CSPP1Q1MSJ5 1256 aa16.46■□□□□ 0.23
USP53-206ENST00000510737 LYPD8Q6UX82 237 aa16.46■□□□□ 0.23
USP53-206ENST00000510737 ZBTB3Q9H5J0 574 aa16.45■□□□□ 0.22
USP53-206ENST00000510737 ATP13A2Q9NQ11 1180 aa16.45■□□□□ 0.22
USP53-206ENST00000510737 QPCTQ16769 361 aa16.44■□□□□ 0.22
USP53-206ENST00000510737 C11orf95C9JLR9 678 aaPredicted RBP16.42■□□□□ 0.22
USP53-206ENST00000510737 PRPF38BQ5VTL8 546 aaKnown RBP16.42■□□□□ 0.22
USP53-206ENST00000510737 PER1O15534 1290 aaPredicted RBP16.41■□□□□ 0.22
USP53-206ENST00000510737 LCE2AQ5TA79 106 aaPredicted RBP16.41■□□□□ 0.22
USP53-206ENST00000510737 ZNF511Q8NB15 262 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms