RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 NUTM1Q86Y26 1132 aa13.08□□□□□ -0.32
NUP54-209ENST00000510569 AK7Q96M32 723 aa13.08□□□□□ -0.32
NUP54-209ENST00000510569 USB1Q9BQ65 265 aaKnown RBP13.08□□□□□ -0.32
NUP54-209ENST00000510569 PRR20EP86478 221 aa13.07□□□□□ -0.32
NUP54-209ENST00000510569 PRR20CP86479 221 aa13.07□□□□□ -0.32
NUP54-209ENST00000510569 PRR20DP86480 221 aa13.07□□□□□ -0.32
NUP54-209ENST00000510569 PRR20BP86481 221 aa13.07□□□□□ -0.32
NUP54-209ENST00000510569 PRR20AP86496 221 aa13.07□□□□□ -0.32
NUP54-209ENST00000510569 GUCA2AQ02747 115 aa13.06□□□□□ -0.32
NUP54-209ENST00000510569 PARP9Q8IXQ6 854 aa13.06□□□□□ -0.32
NUP54-209ENST00000510569 DXOO77932 396 aaKnown RBP13.05□□□□□ -0.32
NUP54-209ENST00000510569 SPIRE2Q8WWL2 714 aa13.04□□□□□ -0.32
NUP54-209ENST00000510569 GDF9O60383 454 aa13.03□□□□□ -0.32
NUP54-209ENST00000510569 SLC24A1O60721 1099 aa13.02□□□□□ -0.33
NUP54-209ENST00000510569 FDX1P10109 184 aa13□□□□□ -0.33
NUP54-209ENST00000510569 TRAF7Q6Q0C0 670 aa13□□□□□ -0.33
NUP54-209ENST00000510569 PCDHGC3Q9UN70 934 aa13□□□□□ -0.33
NUP54-209ENST00000510569 BEGAINQ9BUH8 593 aa12.99□□□□□ -0.33
NUP54-209ENST00000510569 RETREG3Q86VR2 466 aa12.98□□□□□ -0.33
NUP54-209ENST00000510569 PKD2L1Q9P0L9 805 aa12.98□□□□□ -0.33
NUP54-209ENST00000510569 CD2BP2O95400 341 aaKnown RBP12.97□□□□□ -0.33
NUP54-209ENST00000510569 MS4A1P11836 297 aa12.97□□□□□ -0.33
NUP54-209ENST00000510569 SYMPKQ92797 1274 aaKnown RBP12.97□□□□□ -0.33
NUP54-209ENST00000510569 MOXD2PA6NHM9 499 aa12.96□□□□□ -0.33
NUP54-209ENST00000510569 TNFRSF10AO00220 468 aa12.96□□□□□ -0.33
NUP54-209ENST00000510569 JUNDP17535 347 aa12.96□□□□□ -0.33
NUP54-209ENST00000510569 SLC24A3Q9HC58 644 aa12.96□□□□□ -0.33
NUP54-209ENST00000510569 PDE4DQ08499 809 aa12.95□□□□□ -0.34
NUP54-209ENST00000510569 ZBTB24O43167 697 aaPredicted RBP12.94□□□□□ -0.34
NUP54-209ENST00000510569 NDUFV2P19404 249 aa12.94□□□□□ -0.34
NUP54-209ENST00000510569 GJA5P36382 358 aa12.94□□□□□ -0.34
NUP54-209ENST00000510569 DIXDC1Q155Q3 683 aa12.94□□□□□ -0.34
NUP54-209ENST00000510569 BCANQ96GW7 911 aa12.94□□□□□ -0.34
NUP54-209ENST00000510569 TBC1D2Q9BYX2 928 aa12.93□□□□□ -0.34
NUP54-209ENST00000510569 DGAT1O75907 488 aa12.92□□□□□ -0.34
NUP54-209ENST00000510569 TRIM32Q13049 653 aa12.92□□□□□ -0.34
NUP54-209ENST00000510569 C6orf229H3BNL8 230 aa12.91□□□□□ -0.34
NUP54-209ENST00000510569 FOXC1Q12948 553 aa12.9□□□□□ -0.34
NUP54-209ENST00000510569 PKDCCQ504Y2 493 aa12.9□□□□□ -0.34
NUP54-209ENST00000510569 RSBN1LQ6PCB5 846 aaPredicted RBP12.9□□□□□ -0.34
NUP54-209ENST00000510569 TOR4AQ9NXH8 423 aa12.88□□□□□ -0.35
NUP54-209ENST00000510569 FAM187AA6NFU0 413 aa12.87□□□□□ -0.35
NUP54-209ENST00000510569 SPDYE5A6NIY4 337 aa12.87□□□□□ -0.35
NUP54-209ENST00000510569 SPTLC1O15269 473 aa12.87□□□□□ -0.35
NUP54-209ENST00000510569 CCDC24Q8N4L8 307 aa12.87□□□□□ -0.35
NUP54-209ENST00000510569 WNT7AO00755 349 aa12.86□□□□□ -0.35
NUP54-209ENST00000510569 MTMR2Q13614 643 aa12.86□□□□□ -0.35
NUP54-209ENST00000510569 NUDT12Q9BQG2 462 aa12.86□□□□□ -0.35
NUP54-209ENST00000510569 MYT1Q01538 1121 aa12.85□□□□□ -0.35
NUP54-209ENST00000510569 DESI1Q6ICB0 168 aa12.84□□□□□ -0.35
NUP54-209ENST00000510569 PRR7Q8TB68 274 aa12.84□□□□□ -0.35
NUP54-209ENST00000510569 PTPRNQ16849 979 aa12.83□□□□□ -0.36
NUP54-209ENST00000510569 CCNYL3P0C7X3 344 aa12.82□□□□□ -0.36
NUP54-209ENST00000510569 WNT7BP56706 349 aa12.82□□□□□ -0.36
NUP54-209ENST00000510569 CYP4X1Q8N118 509 aa12.82□□□□□ -0.36
NUP54-209ENST00000510569 RIC3Q7Z5B4 369 aa12.81□□□□□ -0.36
NUP54-209ENST00000510569 PCDHB15Q9Y5E8 787 aa12.81□□□□□ -0.36
NUP54-209ENST00000510569 PRPF38BQ5VTL8 546 aaKnown RBP12.8□□□□□ -0.36
NUP54-209ENST00000510569 MYSM1Q5VVJ2 828 aa12.8□□□□□ -0.36
NUP54-209ENST00000510569 PTCRAQ6ISU1 281 aaPredicted RBP12.8□□□□□ -0.36
NUP54-209ENST00000510569 SKOR1P84550 965 aa12.79□□□□□ -0.36
NUP54-209ENST00000510569 TUSC1Q2TAM9 212 aa12.79□□□□□ -0.36
NUP54-209ENST00000510569 ZBTB3Q9H5J0 574 aa12.79□□□□□ -0.36
NUP54-209ENST00000510569 AVPP01185 164 aa12.78□□□□□ -0.36
NUP54-209ENST00000510569 MRGPRX2Q96LB1 330 aa12.78□□□□□ -0.36
NUP54-209ENST00000510569 HRCP23327 699 aa12.77□□□□□ -0.37
NUP54-209ENST00000510569 CRIPAKQ8N1N5 446 aa12.77□□□□□ -0.37
NUP54-209ENST00000510569 EVA1BQ9NVM1 165 aa12.77□□□□□ -0.37
NUP54-209ENST00000510569 LIMD1Q9UGP4 676 aa12.77□□□□□ -0.37
NUP54-209ENST00000510569 CFAP99D6REC4 459 aa12.76□□□□□ -0.37
NUP54-209ENST00000510569 RC3H1Q5TC82 1133 aaKnown RBP12.75□□□□□ -0.37
NUP54-209ENST00000510569 SNIP1Q8TAD8 396 aaKnown RBP12.75□□□□□ -0.37
NUP54-209ENST00000510569 TTC24A2A3L6 582 aaPredicted RBP12.74□□□□□ -0.37
NUP54-209ENST00000510569 KCNH2Q12809 1159 aa12.74□□□□□ -0.37
NUP54-209ENST00000510569 LYPD8Q6UX82 237 aa12.73□□□□□ -0.37
NUP54-209ENST00000510569 CABLES1Q8TDN4 633 aa12.73□□□□□ -0.37
NUP54-209ENST00000510569 UNC93B1Q9H1C4 597 aa12.73□□□□□ -0.37
NUP54-209ENST00000510569 AAASQ9NRG9 546 aa12.73□□□□□ -0.37
NUP54-209ENST00000510569 SMPD1P17405 629 aa12.72□□□□□ -0.37
NUP54-209ENST00000510569 ST8SIA5O15466 376 aa12.71□□□□□ -0.37
NUP54-209ENST00000510569 LILRB3O75022 631 aa12.7□□□□□ -0.38
NUP54-209ENST00000510569 CLK2P49760 499 aaKnown RBP12.7□□□□□ -0.38
NUP54-209ENST00000510569 QPCTQ16769 361 aa12.7□□□□□ -0.38
NUP54-209ENST00000510569 CSPP1Q1MSJ5 1256 aa12.7□□□□□ -0.38
NUP54-209ENST00000510569 CTC1Q2NKJ3 1217 aa12.7□□□□□ -0.38
NUP54-209ENST00000510569 ZNF787Q6DD87 383 aa12.7□□□□□ -0.38
NUP54-209ENST00000510569 RSPH6AQ9H0K4 717 aa12.7□□□□□ -0.38
NUP54-209ENST00000510569 SMCPP49901 116 aaPredicted RBP12.69□□□□□ -0.38
NUP54-209ENST00000510569 SH3BP2P78314 561 aa12.69□□□□□ -0.38
NUP54-209ENST00000510569 F12P00748 615 aaPredicted RBP12.68□□□□□ -0.38
NUP54-209ENST00000510569 KDM4CQ9H3R0 1056 aa12.68□□□□□ -0.38
NUP54-209ENST00000510569 J3QL48 77 aa12.67□□□□□ -0.38
NUP54-209ENST00000510569 GPBP1L1Q9HC44 474 aaPredicted RBP12.67□□□□□ -0.38
NUP54-209ENST00000510569 EHBP1Q8NDI1 1231 aa12.66□□□□□ -0.38
NUP54-209ENST00000510569 SIAH2O43255 324 aa12.65□□□□□ -0.38
NUP54-209ENST00000510569 NUTM2BA6NNL0 878 aaPredicted RBP12.64□□□□□ -0.39
NUP54-209ENST00000510569 NUTM2EB1AL46 878 aaPredicted RBP12.64□□□□□ -0.39
NUP54-209ENST00000510569 AXIN1O15169 862 aa12.64□□□□□ -0.39
NUP54-209ENST00000510569 LINC01559Q495D7 138 aa12.64□□□□□ -0.39
NUP54-209ENST00000510569 NUTM2DQ5VT03 806 aaPredicted RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms