RNA–Protein interactions for RNA: ENST00000509409.5

TPM3-219, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 1,248 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-219ENST00000509409 PRAG1Q86YV5 1406 aa22.69■■□□□ 1.22
TPM3-219ENST00000509409 ADAMTS2O95450 1211 aa22.69■■□□□ 1.22
TPM3-219ENST00000509409 NHSL1Q5SYE7 1610 aa22.68■■□□□ 1.22
TPM3-219ENST00000509409 RAB3GAP2Q9H2M9 1393 aa22.68■■□□□ 1.22
TPM3-219ENST00000509409 SOS2Q07890 1332 aaPredicted RBP22.68■■□□□ 1.22
TPM3-219ENST00000509409 ABCC11Q96J66 1382 aa22.67■■□□□ 1.22
TPM3-219ENST00000509409 NGLY1Q96IV0 654 aa22.67■■□□□ 1.22
TPM3-219ENST00000509409 QTRT2Q9H974 415 aaKnown RBP22.66■■□□□ 1.22
TPM3-219ENST00000509409 CFAP70Q5T0N1 1121 aa22.65■■□□□ 1.22
TPM3-219ENST00000509409 C14orf93Q9H972 538 aaKnown RBP22.65■■□□□ 1.22
TPM3-219ENST00000509409 NPHP3Q7Z494 1330 aa22.64■■□□□ 1.22
TPM3-219ENST00000509409 FOXO3O43524 673 aa22.64■■□□□ 1.21
TPM3-219ENST00000509409 PIK3C2GO75747 1445 aa22.64■■□□□ 1.21
TPM3-219ENST00000509409 PLEKHH1Q9ULM0 1364 aa22.63■■□□□ 1.21
TPM3-219ENST00000509409 XPCQ01831 940 aaPredicted RBP22.62■■□□□ 1.21
TPM3-219ENST00000509409 YTHDC2Q9H6S0 1430 aaKnown RBP22.62■■□□□ 1.21
TPM3-219ENST00000509409 DHX57Q6P158 1386 aaKnown RBP22.62■■□□□ 1.21
TPM3-219ENST00000509409 TECPR2O15040 1411 aa22.61■■□□□ 1.21
TPM3-219ENST00000509409 SIRT1Q96EB6 747 aa22.61■■□□□ 1.21
TPM3-219ENST00000509409 RBM6P78332 1123 aaKnown RBP22.59■■□□□ 1.21
TPM3-219ENST00000509409 SAFB2Q14151 953 aaKnown RBP eCLIP22.59■■□□□ 1.21
TPM3-219ENST00000509409 KDM2AQ9Y2K7 1162 aa22.59■■□□□ 1.21
TPM3-219ENST00000509409 POGKQ9P215 609 aa22.57■■□□□ 1.2
TPM3-219ENST00000509409 USP21Q9UK80 565 aa22.57■■□□□ 1.2
TPM3-219ENST00000509409 CDC42BPGQ6DT37 1551 aa22.56■■□□□ 1.2
TPM3-219ENST00000509409 UPF1Q92900 1129 aaKnown RBP eCLIP22.56■■□□□ 1.21e-31■■■■■ 39.2
TPM3-219ENST00000509409 PRAM1Q96QH2 718 aa22.56■■□□□ 1.2
TPM3-219ENST00000509409 IFT172Q9UG01 1749 aa22.56■■□□□ 1.2
TPM3-219ENST00000509409 DCAF11Q8TEB1 546 aa22.55■■□□□ 1.2
TPM3-219ENST00000509409 HRCP23327 699 aa22.54■■□□□ 1.2
TPM3-219ENST00000509409 KRT28Q7Z3Y7 464 aa22.53■■□□□ 1.2
TPM3-219ENST00000509409 LAMC1P11047 1609 aa22.53■■□□□ 1.2
TPM3-219ENST00000509409 TRPC5Q9UL62 973 aaPredicted RBP22.52■■□□□ 1.2
TPM3-219ENST00000509409 MYOM2P54296 1465 aa22.52■■□□□ 1.2
TPM3-219ENST00000509409 FNBP4Q8N3X1 1017 aaPredicted RBP22.51■■□□□ 1.19
TPM3-219ENST00000509409 PHF8Q9UPP1 1060 aa22.51■■□□□ 1.19
TPM3-219ENST00000509409 TRAK1Q9UPV9 953 aa22.51■■□□□ 1.19
TPM3-219ENST00000509409 NRXN1Q9ULB1 1477 aa22.51■■□□□ 1.19
TPM3-219ENST00000509409 CDK12Q9NYV4 1490 aaPredicted RBP22.5■■□□□ 1.19
TPM3-219ENST00000509409 PSME1Q06323 249 aa22.5■■□□□ 1.19
TPM3-219ENST00000509409 PXDNQ92626 1479 aa22.49■■□□□ 1.19
TPM3-219ENST00000509409 KNDC1Q76NI1 1749 aa22.48■■□□□ 1.19
TPM3-219ENST00000509409 PLEKHG5O94827 1062 aa22.47■■□□□ 1.19
TPM3-219ENST00000509409 STAC3Q96MF2 364 aa22.47■■□□□ 1.19
TPM3-219ENST00000509409 SPATA31A3Q5VYP0 1347 aa22.47■■□□□ 1.19
TPM3-219ENST00000509409 HAP1P54257 671 aaPredicted RBP22.46■■□□□ 1.19
TPM3-219ENST00000509409 LMOD2Q6P5Q4 547 aa22.46■■□□□ 1.19
TPM3-219ENST00000509409 HIRIP3Q9BW71 556 aaPredicted RBP22.45■■□□□ 1.18
TPM3-219ENST00000509409 RGS12O14924 1447 aa22.44■■□□□ 1.18
TPM3-219ENST00000509409 PMFBP1Q8TBY8 1022 aa22.44■■□□□ 1.18
TPM3-219ENST00000509409 MINK1Q8N4C8 1332 aaPredicted RBP22.43■■□□□ 1.18
TPM3-219ENST00000509409 FMN2Q9NZ56 1722 aa22.41■■□□□ 1.18
TPM3-219ENST00000509409 COL22A1Q8NFW1 1626 aaPredicted RBP22.41■■□□□ 1.18
TPM3-219ENST00000509409 CABLES1Q8TDN4 633 aa22.39■■□□□ 1.17
TPM3-219ENST00000509409 DLC1Q96QB1 1528 aa22.39■■□□□ 1.17
TPM3-219ENST00000509409 ATRNO75882 1429 aa22.39■■□□□ 1.17
TPM3-219ENST00000509409 UNC5CLQ8IV45 518 aa22.37■■□□□ 1.17
TPM3-219ENST00000509409 GJD4Q96KN9 370 aaPredicted RBP22.37■■□□□ 1.17
TPM3-219ENST00000509409 KIF1AQ12756 1690 aa22.36■■□□□ 1.17
TPM3-219ENST00000509409 BCL9LQ86UU0 1499 aa22.36■■□□□ 1.17
TPM3-219ENST00000509409 WASLO00401 505 aaPredicted RBP22.36■■□□□ 1.17
TPM3-219ENST00000509409 ADGRB1O14514 1584 aa22.35■■□□□ 1.17
TPM3-219ENST00000509409 TNS3Q68CZ2 1445 aa22.35■■□□□ 1.17
TPM3-219ENST00000509409 SBNO1A3KN83 1393 aa22.35■■□□□ 1.17
TPM3-219ENST00000509409 ANKARQ7Z5J8 1434 aa22.34■■□□□ 1.17
TPM3-219ENST00000509409 ATAD2Q6PL18 1390 aa22.34■■□□□ 1.17
TPM3-219ENST00000509409 NGDNQ8NEJ9 315 aaKnown RBP22.33■■□□□ 1.17
TPM3-219ENST00000509409 ARHGEF10O15013 1369 aa22.33■■□□□ 1.17
TPM3-219ENST00000509409 EIF3AQ14152 1382 aaKnown RBP22.33■■□□□ 1.17
TPM3-219ENST00000509409 GPRASP1Q5JY77 1395 aa22.33■■□□□ 1.17
TPM3-219ENST00000509409 CCDC9Q9Y3X0 531 aaKnown RBP22.31■■□□□ 1.16
TPM3-219ENST00000509409 PRR36Q9H6K5 1346 aa22.31■■□□□ 1.16
TPM3-219ENST00000509409 RGPD8O14715 1765 aaPredicted RBP22.3■■□□□ 1.16
TPM3-219ENST00000509409 PAK3O75914 559 aaPredicted RBP22.3■■□□□ 1.16
TPM3-219ENST00000509409 SLIT2O94813 1529 aa22.27■■□□□ 1.16
TPM3-219ENST00000509409 NUDT16Q96DE0 195 aaKnown RBP22.27■■□□□ 1.16
TPM3-219ENST00000509409 FAM83GA6ND36 823 aa22.26■■□□□ 1.15
TPM3-219ENST00000509409 CDK19Q9BWU1 502 aa22.26■■□□□ 1.15
TPM3-219ENST00000509409 ADGRB2O60241 1585 aa22.25■■□□□ 1.15
TPM3-219ENST00000509409 VPS72Q15906 364 aa22.25■■□□□ 1.15
TPM3-219ENST00000509409 MARF1Q9Y4F3 1742 aaKnown RBP22.24■■□□□ 1.15
TPM3-219ENST00000509409 NBPF1Q3BBV0 1214 aa22.24■■□□□ 1.15
TPM3-219ENST00000509409 TULP4Q9NRJ4 1543 aa22.24■■□□□ 1.15
TPM3-219ENST00000509409 RALGAPBQ86X10 1494 aa22.23■■□□□ 1.15
TPM3-219ENST00000509409 USP32Q8NFA0 1604 aa22.23■■□□□ 1.15
TPM3-219ENST00000509409 CCDC125Q86Z20 511 aa22.22■■□□□ 1.15
TPM3-219ENST00000509409 SEPT12Q8IYM1 358 aa22.22■■□□□ 1.15
TPM3-219ENST00000509409 BTG4Q9NY30 223 aa22.2■■□□□ 1.14
TPM3-219ENST00000509409 A0A0G2JS52 829 aa22.19■■□□□ 1.14
TPM3-219ENST00000509409 MYT1Q01538 1121 aa22.19■■□□□ 1.14
TPM3-219ENST00000509409 CCDC61Q9Y6R9 512 aa22.18■■□□□ 1.14
TPM3-219ENST00000509409 SRPK2P78362 688 aaKnown RBP22.16■■□□□ 1.14
TPM3-219ENST00000509409 NEUROD1Q13562 356 aa22.16■■□□□ 1.14
TPM3-219ENST00000509409 NBPF8Q3BBV2 869 aa22.16■■□□□ 1.14
TPM3-219ENST00000509409 NUTM2GQ5VZR2 741 aa22.16■■□□□ 1.14
TPM3-219ENST00000509409 ACEP12821 1306 aa22.15■■□□□ 1.14
TPM3-219ENST00000509409 L3MBTL2Q969R5 705 aa22.15■■□□□ 1.14
TPM3-219ENST00000509409 SIN3AQ96ST3 1273 aa22.15■■□□□ 1.14
TPM3-219ENST00000509409 PRDM11Q9NQV5 511 aa22.15■■□□□ 1.14
TPM3-219ENST00000509409 GLI3P10071 1580 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms