RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.05□□□□□ -0.32
NUP54-207ENST00000508583 SCAF1Q9H7N4 1312 aaKnown RBP13.04□□□□□ -0.32
NUP54-207ENST00000508583 PIP4K2BP78356 416 aa13.03□□□□□ -0.32
NUP54-207ENST00000508583 POGKQ9P215 609 aa13.03□□□□□ -0.32
NUP54-207ENST00000508583 ROCK2O75116 1388 aaKnown RBP13.03□□□□□ -0.32
NUP54-207ENST00000508583 TRPM1Q7Z4N2 1603 aa13.02□□□□□ -0.32
NUP54-207ENST00000508583 EIF3AQ14152 1382 aaKnown RBP13.02□□□□□ -0.33
NUP54-207ENST00000508583 TRAK1Q9UPV9 953 aa13.01□□□□□ -0.33
NUP54-207ENST00000508583 ROBO1Q9Y6N7 1651 aa13.01□□□□□ -0.33
NUP54-207ENST00000508583 PRAM1Q96QH2 718 aa13□□□□□ -0.33
NUP54-207ENST00000508583 CDC42BPGQ6DT37 1551 aa12.99□□□□□ -0.33
NUP54-207ENST00000508583 RALGAPBQ86X10 1494 aa12.99□□□□□ -0.33
NUP54-207ENST00000508583 SLAIN2Q9P270 581 aa12.99□□□□□ -0.33
NUP54-207ENST00000508583 PLEKHH1Q9ULM0 1364 aa12.98□□□□□ -0.33
NUP54-207ENST00000508583 WAPLQ7Z5K2 1190 aa12.98□□□□□ -0.33
NUP54-207ENST00000508583 ARHGEF28Q8N1W1 1705 aaKnown RBP12.98□□□□□ -0.33
NUP54-207ENST00000508583 GPRASP1Q5JY77 1395 aa12.97□□□□□ -0.33
NUP54-207ENST00000508583 NBPF1Q3BBV0 1214 aa12.97□□□□□ -0.33
NUP54-207ENST00000508583 ADGRB2O60241 1585 aa12.96□□□□□ -0.33
NUP54-207ENST00000508583 NBPF8Q3BBV2 869 aa12.96□□□□□ -0.33
NUP54-207ENST00000508583 CARD11Q9BXL7 1154 aa12.96□□□□□ -0.33
NUP54-207ENST00000508583 MST1RQ04912 1400 aa12.95□□□□□ -0.34
NUP54-207ENST00000508583 CENPJQ9HC77 1338 aaPredicted RBP12.94□□□□□ -0.34
NUP54-207ENST00000508583 SLC24A1O60721 1099 aa12.94□□□□□ -0.34
NUP54-207ENST00000508583 SAFB2Q14151 953 aaKnown RBP eCLIP12.94□□□□□ -0.34
NUP54-207ENST00000508583 HSPA1LP34931 641 aa12.93□□□□□ -0.34
NUP54-207ENST00000508583 RNF39Q9H2S5 420 aa12.93□□□□□ -0.34
NUP54-207ENST00000508583 FMN2Q9NZ56 1722 aa12.93□□□□□ -0.34
NUP54-207ENST00000508583 C1orf167Q5SNV9 1468 aa12.92□□□□□ -0.34
NUP54-207ENST00000508583 PHLPP1O60346 1717 aa12.92□□□□□ -0.34
NUP54-207ENST00000508583 ANKARQ7Z5J8 1434 aa12.92□□□□□ -0.34
NUP54-207ENST00000508583 MINK1Q8N4C8 1332 aaPredicted RBP12.91□□□□□ -0.34
NUP54-207ENST00000508583 QRICH2Q9H0J4 1663 aa12.91□□□□□ -0.34
NUP54-207ENST00000508583 WASLO00401 505 aaPredicted RBP12.9□□□□□ -0.34
NUP54-207ENST00000508583 NHSL1Q5SYE7 1610 aa12.9□□□□□ -0.34
NUP54-207ENST00000508583 TULP4Q9NRJ4 1543 aa12.89□□□□□ -0.35
NUP54-207ENST00000508583 AHDC1Q5TGY3 1603 aaPredicted RBP12.89□□□□□ -0.35
NUP54-207ENST00000508583 BRINP3Q76B58 766 aa12.89□□□□□ -0.35
NUP54-207ENST00000508583 HIRIP3Q9BW71 556 aaPredicted RBP12.89□□□□□ -0.35
NUP54-207ENST00000508583 SBNO2Q9Y2G9 1366 aa12.89□□□□□ -0.35
NUP54-207ENST00000508583 KIF1AQ12756 1690 aa12.89□□□□□ -0.35
NUP54-207ENST00000508583 EVC2Q86UK5 1308 aa12.88□□□□□ -0.35
NUP54-207ENST00000508583 COL16A1Q07092 1604 aaPredicted RBP12.88□□□□□ -0.35
NUP54-207ENST00000508583 ESCO1Q5FWF5 840 aa12.88□□□□□ -0.35
NUP54-207ENST00000508583 RGPD8O14715 1765 aaPredicted RBP12.88□□□□□ -0.35
NUP54-207ENST00000508583 USP32Q8NFA0 1604 aa12.88□□□□□ -0.35
NUP54-207ENST00000508583 NPHP3Q7Z494 1330 aa12.88□□□□□ -0.35
NUP54-207ENST00000508583 ITSN1Q15811 1721 aa12.87□□□□□ -0.35
NUP54-207ENST00000508583 USP47Q96K76 1375 aa12.86□□□□□ -0.35
NUP54-207ENST00000508583 NUTM2FA1L443 756 aa12.86□□□□□ -0.35
NUP54-207ENST00000508583 SRPK2P78362 688 aaKnown RBP12.86□□□□□ -0.35
NUP54-207ENST00000508583 CDK19Q9BWU1 502 aa12.85□□□□□ -0.35
NUP54-207ENST00000508583 DDX17Q92841 729 aaKnown RBP12.84□□□□□ -0.35
NUP54-207ENST00000508583 ORAI2Q96SN7 254 aa12.84□□□□□ -0.35
NUP54-207ENST00000508583 PHF8Q9UPP1 1060 aa12.84□□□□□ -0.35
NUP54-207ENST00000508583 ATAD2Q6PL18 1390 aa12.83□□□□□ -0.36
NUP54-207ENST00000508583 PSME1Q06323 249 aa12.83□□□□□ -0.36
NUP54-207ENST00000508583 LRRC59Q96AG4 307 aaKnown RBP12.83□□□□□ -0.36
NUP54-207ENST00000508583 NUDT16Q96DE0 195 aaKnown RBP12.83□□□□□ -0.36
NUP54-207ENST00000508583 CCDC61Q9Y6R9 512 aa12.83□□□□□ -0.36
NUP54-207ENST00000508583 ATP7BP35670 1465 aa12.83□□□□□ -0.36
NUP54-207ENST00000508583 JCADQ9P266 1359 aa12.82□□□□□ -0.36
NUP54-207ENST00000508583 CDCA8Q53HL2 280 aa12.82□□□□□ -0.36
NUP54-207ENST00000508583 PUS7Q96PZ0 661 aaKnown RBP12.82□□□□□ -0.36
NUP54-207ENST00000508583 MED1Q15648 1581 aaPredicted RBP12.81□□□□□ -0.36
NUP54-207ENST00000508583 SHPRHQ149N8 1683 aa12.81□□□□□ -0.36
NUP54-207ENST00000508583 ST20-MTHFSA0A0A6YYL1 179 aa12.81□□□□□ -0.36
NUP54-207ENST00000508583 EIF4G2P78344 907 aaKnown RBP eCLIP12.81□□□□□ -0.36
NUP54-207ENST00000508583 NGDNQ8NEJ9 315 aaKnown RBP12.81□□□□□ -0.36
NUP54-207ENST00000508583 SOS2Q07890 1332 aaPredicted RBP12.81□□□□□ -0.36
NUP54-207ENST00000508583 TOPAZ1Q8N9V7 1692 aa12.8□□□□□ -0.36
NUP54-207ENST00000508583 FOXO3O43524 673 aa12.8□□□□□ -0.36
NUP54-207ENST00000508583 TMF1P82094 1093 aa12.8□□□□□ -0.36
NUP54-207ENST00000508583 CABP2Q9NPB3 220 aa12.79□□□□□ -0.36
NUP54-207ENST00000508583 SPATA31A6Q5VVP1 1343 aa12.79□□□□□ -0.36
NUP54-207ENST00000508583 PRR36Q9H6K5 1346 aa12.79□□□□□ -0.36
NUP54-207ENST00000508583 NINLQ9Y2I6 1382 aa12.79□□□□□ -0.36
NUP54-207ENST00000508583 PPIP5K1Q6PFW1 1433 aa12.79□□□□□ -0.36
NUP54-207ENST00000508583 PXDNQ92626 1479 aa12.78□□□□□ -0.36
NUP54-207ENST00000508583 PLEKHG3A1L390 1219 aa12.78□□□□□ -0.36
NUP54-207ENST00000508583 TESK2Q96S53 571 aa12.78□□□□□ -0.36
NUP54-207ENST00000508583 XPCQ01831 940 aaPredicted RBP12.77□□□□□ -0.37
NUP54-207ENST00000508583 KRT28Q7Z3Y7 464 aa12.77□□□□□ -0.37
NUP54-207ENST00000508583 PMFBP1Q8TBY8 1022 aa12.77□□□□□ -0.37
NUP54-207ENST00000508583 SBNO1A3KN83 1393 aa12.77□□□□□ -0.37
NUP54-207ENST00000508583 POLR3AO14802 1390 aaPredicted RBP12.77□□□□□ -0.37
NUP54-207ENST00000508583 ARHGEF10O15013 1369 aa12.77□□□□□ -0.37
NUP54-207ENST00000508583 BRD4O60885 1362 aaPredicted RBP12.77□□□□□ -0.37
NUP54-207ENST00000508583 ZEB1P37275 1124 aaPredicted RBP12.76□□□□□ -0.37
NUP54-207ENST00000508583 TNS3Q68CZ2 1445 aa12.75□□□□□ -0.37
NUP54-207ENST00000508583 ZNF692Q9BU19 519 aaPredicted RBP12.75□□□□□ -0.37
NUP54-207ENST00000508583 TRPM3Q9HCF6 1732 aaPredicted RBP12.74□□□□□ -0.37
NUP54-207ENST00000508583 LRP6O75581 1613 aa12.74□□□□□ -0.37
NUP54-207ENST00000508583 ACEP12821 1306 aa12.74□□□□□ -0.37
NUP54-207ENST00000508583 SPATA31A3Q5VYP0 1347 aa12.74□□□□□ -0.37
NUP54-207ENST00000508583 CABP1Q9NZU7 370 aa12.74□□□□□ -0.37
NUP54-207ENST00000508583 COL22A1Q8NFW1 1626 aaPredicted RBP12.73□□□□□ -0.37
NUP54-207ENST00000508583 PNPLA6Q8IY17 1366 aa12.73□□□□□ -0.37
NUP54-207ENST00000508583 TERF2IPQ9NYB0 399 aa12.73□□□□□ -0.37
NUP54-207ENST00000508583 DISP3Q9P2K9 1392 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 94.8 ms