RNA–Protein interactions for RNA: ENST00000508476.5

UBE2D3-225, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 3

Gene UBE2D3, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-225ENST00000508476 MSS51Q4VC12 460 aa11.27□□□□□ -0.61
UBE2D3-225ENST00000508476 TPRNQ4KMQ1 711 aa11.26□□□□□ -0.61
UBE2D3-225ENST00000508476 USB1Q9BQ65 265 aaKnown RBP11.26□□□□□ -0.61
UBE2D3-225ENST00000508476 LIAT1Q6ZQX7 453 aa11.25□□□□□ -0.61
UBE2D3-225ENST00000508476 FCF1Q9Y324 198 aaKnown RBP11.25□□□□□ -0.61
UBE2D3-225ENST00000508476 V9GY48 417 aaPredicted RBP11.25□□□□□ -0.61
UBE2D3-225ENST00000508476 SLC19A1P41440 591 aa11.24□□□□□ -0.61
UBE2D3-225ENST00000508476 KDM4CQ9H3R0 1056 aa11.23□□□□□ -0.61
UBE2D3-225ENST00000508476 PCDHB15Q9Y5E8 787 aa11.23□□□□□ -0.61
UBE2D3-225ENST00000508476 C6orf229H3BNL8 230 aa11.22□□□□□ -0.61
UBE2D3-225ENST00000508476 RSBN1LQ6PCB5 846 aaPredicted RBP11.22□□□□□ -0.61
UBE2D3-225ENST00000508476 IRX2Q9BZI1 471 aaPredicted RBP11.22□□□□□ -0.61
UBE2D3-225ENST00000508476 MMP16P51512 607 aa11.21□□□□□ -0.61
UBE2D3-225ENST00000508476 DXOO77932 396 aaKnown RBP11.2□□□□□ -0.62
UBE2D3-225ENST00000508476 MYSM1Q5VVJ2 828 aa11.2□□□□□ -0.62
UBE2D3-225ENST00000508476 SPTLC1O15269 473 aa11.19□□□□□ -0.62
UBE2D3-225ENST00000508476 RIC3Q7Z5B4 369 aa11.19□□□□□ -0.62
UBE2D3-225ENST00000508476 RETREG3Q86VR2 466 aa11.19□□□□□ -0.62
UBE2D3-225ENST00000508476 FAM117AQ9C073 453 aa11.19□□□□□ -0.62
UBE2D3-225ENST00000508476 LIMD1Q9UGP4 676 aa11.19□□□□□ -0.62
UBE2D3-225ENST00000508476 DIXDC1Q155Q3 683 aa11.18□□□□□ -0.62
UBE2D3-225ENST00000508476 CSPP1Q1MSJ5 1256 aa11.18□□□□□ -0.62
UBE2D3-225ENST00000508476 SPRYD7Q5W111 196 aa11.18□□□□□ -0.62
UBE2D3-225ENST00000508476 JUNDP17535 347 aa11.16□□□□□ -0.62
UBE2D3-225ENST00000508476 MTMR2Q13614 643 aa11.16□□□□□ -0.62
UBE2D3-225ENST00000508476 CABLES1Q8TDN4 633 aa11.16□□□□□ -0.62
UBE2D3-225ENST00000508476 GJA5P36382 358 aa11.15□□□□□ -0.62
UBE2D3-225ENST00000508476 TRIM67Q6ZTA4 783 aa11.15□□□□□ -0.62
UBE2D3-225ENST00000508476 ZNF697Q5TEC3 545 aa11.14□□□□□ -0.63
UBE2D3-225ENST00000508476 PRR7Q8TB68 274 aa11.14□□□□□ -0.63
UBE2D3-225ENST00000508476 POLR3EQ9NVU0 708 aa11.14□□□□□ -0.63
UBE2D3-225ENST00000508476 PLEKHG3A1L390 1219 aa11.13□□□□□ -0.63
UBE2D3-225ENST00000508476 HRCP23327 699 aa11.13□□□□□ -0.63
UBE2D3-225ENST00000508476 QPCTQ16769 361 aa11.13□□□□□ -0.63
UBE2D3-225ENST00000508476 ZNF598Q86UK7 904 aaKnown RBP11.13□□□□□ -0.63
UBE2D3-225ENST00000508476 CCDC24Q8N4L8 307 aa11.13□□□□□ -0.63
UBE2D3-225ENST00000508476 CFAP99D6REC4 459 aa11.12□□□□□ -0.63
UBE2D3-225ENST00000508476 GFRA3O60609 400 aa11.12□□□□□ -0.63
UBE2D3-225ENST00000508476 PRKCSHP14314 528 aaPredicted RBP11.12□□□□□ -0.63
UBE2D3-225ENST00000508476 NEUROD2Q15784 382 aa11.12□□□□□ -0.63
UBE2D3-225ENST00000508476 PDZRN3Q9UPQ7 1066 aa11.11□□□□□ -0.63
UBE2D3-225ENST00000508476 RPIAP49247 311 aa11.1□□□□□ -0.63
UBE2D3-225ENST00000508476 CLK2P49760 499 aaKnown RBP11.1□□□□□ -0.63
UBE2D3-225ENST00000508476 ZBTB3Q9H5J0 574 aa11.1□□□□□ -0.63
UBE2D3-225ENST00000508476 SPDYE5A6NIY4 337 aa11.09□□□□□ -0.63
UBE2D3-225ENST00000508476 BRPF1P55201 1214 aaPredicted RBP11.09□□□□□ -0.63
UBE2D3-225ENST00000508476 NUDT12Q9BQG2 462 aa11.09□□□□□ -0.63
UBE2D3-225ENST00000508476 TNFRSF10AO00220 468 aa11.08□□□□□ -0.64
UBE2D3-225ENST00000508476 PTCRAQ6ISU1 281 aaPredicted RBP11.08□□□□□ -0.64
UBE2D3-225ENST00000508476 DDRGK1Q96HY6 314 aa11.08□□□□□ -0.64
UBE2D3-225ENST00000508476 RSPH6AQ9H0K4 717 aa11.08□□□□□ -0.64
UBE2D3-225ENST00000508476 ZBTB24O43167 697 aaPredicted RBP11.07□□□□□ -0.64
UBE2D3-225ENST00000508476 GDF9O60383 454 aa11.07□□□□□ -0.64
UBE2D3-225ENST00000508476 LILRB3O75022 631 aa11.07□□□□□ -0.64
UBE2D3-225ENST00000508476 PRPF38BQ5VTL8 546 aaKnown RBP11.07□□□□□ -0.64
UBE2D3-225ENST00000508476 FBXO31Q5XUX0 539 aaPredicted RBP11.07□□□□□ -0.64
UBE2D3-225ENST00000508476 FOXC1Q12948 553 aa11.06□□□□□ -0.64
UBE2D3-225ENST00000508476 TRIM32Q13049 653 aa11.06□□□□□ -0.64
UBE2D3-225ENST00000508476 RTL5Q5HYW3 569 aaPredicted RBP11.06□□□□□ -0.64
UBE2D3-225ENST00000508476 PROCA1Q8NCQ7 364 aaPredicted RBP11.06□□□□□ -0.64
UBE2D3-225ENST00000508476 PKD2L1Q9P0L9 805 aa11.06□□□□□ -0.64
UBE2D3-225ENST00000508476 NUTM2BA6NNL0 878 aaPredicted RBP11.05□□□□□ -0.64
UBE2D3-225ENST00000508476 NUTM2EB1AL46 878 aaPredicted RBP11.05□□□□□ -0.64
UBE2D3-225ENST00000508476 NRG2O14511 850 aaPredicted RBP11.05□□□□□ -0.64
UBE2D3-225ENST00000508476 CD2BP2O95400 341 aaKnown RBP11.05□□□□□ -0.64
UBE2D3-225ENST00000508476 TUSC1Q2TAM9 212 aa11.05□□□□□ -0.64
UBE2D3-225ENST00000508476 SH3D19Q5HYK7 790 aa11.05□□□□□ -0.64
UBE2D3-225ENST00000508476 NUTM2DQ5VT03 806 aaPredicted RBP11.05□□□□□ -0.64
UBE2D3-225ENST00000508476 NUTM2AQ8IVF1 878 aaPredicted RBP11.05□□□□□ -0.64
UBE2D3-225ENST00000508476 CCNYL3P0C7X3 344 aa11.04□□□□□ -0.64
UBE2D3-225ENST00000508476 PTPRNQ16849 979 aa11.04□□□□□ -0.64
UBE2D3-225ENST00000508476 Q6ZNB5 142 aa11.04□□□□□ -0.64
UBE2D3-225ENST00000508476 PER1O15534 1290 aaPredicted RBP11.03□□□□□ -0.64
UBE2D3-225ENST00000508476 SKIV2LQ15477 1246 aaKnown RBP11.03□□□□□ -0.64
UBE2D3-225ENST00000508476 DESI1Q6ICB0 168 aa11.03□□□□□ -0.64
UBE2D3-225ENST00000508476 IL27Q8NEV9 243 aa11.03□□□□□ -0.64
UBE2D3-225ENST00000508476 TSC1Q92574 1164 aa11.03□□□□□ -0.64
UBE2D3-225ENST00000508476 LCE2BO14633 110 aa11.02□□□□□ -0.65
UBE2D3-225ENST00000508476 PRR20EP86478 221 aa11.02□□□□□ -0.65
UBE2D3-225ENST00000508476 PRR20CP86479 221 aa11.02□□□□□ -0.65
UBE2D3-225ENST00000508476 PRR20DP86480 221 aa11.02□□□□□ -0.65
UBE2D3-225ENST00000508476 PRR20BP86481 221 aa11.02□□□□□ -0.65
UBE2D3-225ENST00000508476 PRR20AP86496 221 aa11.02□□□□□ -0.65
UBE2D3-225ENST00000508476 LAPTM4AQ15012 233 aa11.02□□□□□ -0.65
UBE2D3-225ENST00000508476 SKOR1P84550 965 aa11.01□□□□□ -0.65
UBE2D3-225ENST00000508476 LYPD8Q6UX82 237 aa11.01□□□□□ -0.65
UBE2D3-225ENST00000508476 EVA1BQ9NVM1 165 aa11.01□□□□□ -0.65
UBE2D3-225ENST00000508476 KCNH2Q12809 1159 aa10.99□□□□□ -0.65
UBE2D3-225ENST00000508476 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.99□□□□□ -0.65
UBE2D3-225ENST00000508476 ATP1B4Q9UN42 357 aaPredicted RBP10.99□□□□□ -0.65
UBE2D3-225ENST00000508476 UNC93B1Q9H1C4 597 aa10.98□□□□□ -0.65
UBE2D3-225ENST00000508476 MAP10Q9P2G4 905 aa10.98□□□□□ -0.65
UBE2D3-225ENST00000508476 F12P00748 615 aaPredicted RBP10.96□□□□□ -0.65
UBE2D3-225ENST00000508476 CTHP32929 405 aa10.96□□□□□ -0.65
UBE2D3-225ENST00000508476 LINC01559Q495D7 138 aa10.96□□□□□ -0.65
UBE2D3-225ENST00000508476 WNT7AO00755 349 aa10.95□□□□□ -0.66
UBE2D3-225ENST00000508476 MRGPRX2Q96LB1 330 aa10.95□□□□□ -0.66
UBE2D3-225ENST00000508476 CTDSPL2Q05D32 466 aa10.94□□□□□ -0.66
UBE2D3-225ENST00000508476 RC3H1Q5TC82 1133 aaKnown RBP10.94□□□□□ -0.66
UBE2D3-225ENST00000508476 BAP1Q92560 729 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms