RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 ATF3P18847 181 aa11.56□□□□□ -0.56
LIMCH1-206ENST00000505705 LTBP4Q8N2S1 1624 aa11.56□□□□□ -0.56
LIMCH1-206ENST00000505705 MINK1Q8N4C8 1332 aaPredicted RBP11.56□□□□□ -0.56
LIMCH1-206ENST00000505705 CENPJQ9HC77 1338 aaPredicted RBP11.56□□□□□ -0.56
LIMCH1-206ENST00000505705 GPRASP1Q5JY77 1395 aa11.55□□□□□ -0.56
LIMCH1-206ENST00000505705 PLEKHH1Q9ULM0 1364 aa11.55□□□□□ -0.56
LIMCH1-206ENST00000505705 XRN1Q8IZH2 1706 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-206ENST00000505705 TECPR2O15040 1411 aa11.55□□□□□ -0.56
LIMCH1-206ENST00000505705 FAM135BQ49AJ0 1406 aa11.55□□□□□ -0.56
LIMCH1-206ENST00000505705 HIRIP3Q9BW71 556 aaPredicted RBP11.55□□□□□ -0.56
LIMCH1-206ENST00000505705 C19orf44Q9H6X5 657 aa11.55□□□□□ -0.56
LIMCH1-206ENST00000505705 NCOA3Q9Y6Q9 1424 aa11.54□□□□□ -0.56
LIMCH1-206ENST00000505705 EIF4G2P78344 907 aaKnown RBP eCLIP11.54□□□□□ -0.56
LIMCH1-206ENST00000505705 DLC1Q96QB1 1528 aa11.54□□□□□ -0.56
LIMCH1-206ENST00000505705 KNDC1Q76NI1 1749 aa11.53□□□□□ -0.56
LIMCH1-206ENST00000505705 ST20-MTHFSA0A0A6YYL1 179 aa11.53□□□□□ -0.56
LIMCH1-206ENST00000505705 TOM1O60784 492 aa11.53□□□□□ -0.56
LIMCH1-206ENST00000505705 CADPS2Q86UW7 1296 aa11.53□□□□□ -0.56
LIMCH1-206ENST00000505705 USP47Q96K76 1375 aa11.53□□□□□ -0.56
LIMCH1-206ENST00000505705 NUTM2FA1L443 756 aa11.52□□□□□ -0.57
LIMCH1-206ENST00000505705 UBAP1LF5GYI3 381 aa11.52□□□□□ -0.57
LIMCH1-206ENST00000505705 SLC24A1O60721 1099 aa11.51□□□□□ -0.57
LIMCH1-206ENST00000505705 HSPA5P11021 654 aaKnown RBP11.51□□□□□ -0.57
LIMCH1-206ENST00000505705 CACNB1Q02641 598 aaPredicted RBP11.51□□□□□ -0.57
LIMCH1-206ENST00000505705 ADGRL3Q9HAR2 1447 aa11.51□□□□□ -0.57
LIMCH1-206ENST00000505705 ARHGEF28Q8N1W1 1705 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-206ENST00000505705 PIP4K2BP78356 416 aa11.5□□□□□ -0.57
LIMCH1-206ENST00000505705 SRPK2P78362 688 aaKnown RBP11.5□□□□□ -0.57
LIMCH1-206ENST00000505705 EVC2Q86UK5 1308 aa11.5□□□□□ -0.57
LIMCH1-206ENST00000505705 WASLO00401 505 aaPredicted RBP11.49□□□□□ -0.57
LIMCH1-206ENST00000505705 CDK19Q9BWU1 502 aa11.49□□□□□ -0.57
LIMCH1-206ENST00000505705 TMF1P82094 1093 aa11.48□□□□□ -0.57
LIMCH1-206ENST00000505705 POLR3GLQ9BT43 218 aa11.48□□□□□ -0.57
LIMCH1-206ENST00000505705 SLAIN2Q9P270 581 aa11.48□□□□□ -0.57
LIMCH1-206ENST00000505705 IQSEC2Q5JU85 1478 aa11.48□□□□□ -0.57
LIMCH1-206ENST00000505705 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-206ENST00000505705 ESCO1Q5FWF5 840 aa11.47□□□□□ -0.57
LIMCH1-206ENST00000505705 CABP2Q9NPB3 220 aa11.47□□□□□ -0.57
LIMCH1-206ENST00000505705 XIRP1Q702N8 1843 aaKnown RBP11.46□□□□□ -0.57
LIMCH1-206ENST00000505705 QRICH2Q9H0J4 1663 aa11.46□□□□□ -0.57
LIMCH1-206ENST00000505705 DCCP43146 1447 aa11.46□□□□□ -0.57
LIMCH1-206ENST00000505705 CDCA8Q53HL2 280 aa11.46□□□□□ -0.57
LIMCH1-206ENST00000505705 RNF39Q9H2S5 420 aa11.46□□□□□ -0.57
LIMCH1-206ENST00000505705 NALCNQ8IZF0 1738 aa11.46□□□□□ -0.58
LIMCH1-206ENST00000505705 TMC1Q8TDI8 760 aa11.44□□□□□ -0.58
LIMCH1-206ENST00000505705 NUDT16Q96DE0 195 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-206ENST00000505705 TESK2Q96S53 571 aa11.44□□□□□ -0.58
LIMCH1-206ENST00000505705 SBNO2Q9Y2G9 1366 aa11.43□□□□□ -0.58
LIMCH1-206ENST00000505705 CDC42BPGQ6DT37 1551 aa11.43□□□□□ -0.58
LIMCH1-206ENST00000505705 PMFBP1Q8TBY8 1022 aa11.43□□□□□ -0.58
LIMCH1-206ENST00000505705 ORAI2Q96SN7 254 aa11.43□□□□□ -0.58
LIMCH1-206ENST00000505705 C1orf167Q5SNV9 1468 aa11.43□□□□□ -0.58
LIMCH1-206ENST00000505705 CCDC61Q9Y6R9 512 aa11.42□□□□□ -0.58
LIMCH1-206ENST00000505705 MST1RQ04912 1400 aa11.42□□□□□ -0.58
LIMCH1-206ENST00000505705 ADGRB2O60241 1585 aa11.41□□□□□ -0.58
LIMCH1-206ENST00000505705 BRINP3Q76B58 766 aa11.41□□□□□ -0.58
LIMCH1-206ENST00000505705 NGDNQ8NEJ9 315 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-206ENST00000505705 PHF8Q9UPP1 1060 aa11.41□□□□□ -0.58
LIMCH1-206ENST00000505705 ATAD2Q6PL18 1390 aa11.41□□□□□ -0.58
LIMCH1-206ENST00000505705 TULP4Q9NRJ4 1543 aa11.4□□□□□ -0.58
LIMCH1-206ENST00000505705 PSME1Q06323 249 aa11.4□□□□□ -0.58
LIMCH1-206ENST00000505705 FBXO41Q8TF61 875 aa11.4□□□□□ -0.58
LIMCH1-206ENST00000505705 CABP1Q9NZU7 370 aa11.4□□□□□ -0.58
LIMCH1-206ENST00000505705 ANKARQ7Z5J8 1434 aa11.4□□□□□ -0.58
LIMCH1-206ENST00000505705 DISP3Q9P2K9 1392 aa11.4□□□□□ -0.59
LIMCH1-206ENST00000505705 PRR36Q9H6K5 1346 aa11.39□□□□□ -0.59
LIMCH1-206ENST00000505705 FOXO3O43524 673 aa11.39□□□□□ -0.59
LIMCH1-206ENST00000505705 PUS7Q96PZ0 661 aaKnown RBP11.39□□□□□ -0.59
LIMCH1-206ENST00000505705 FMN2Q9NZ56 1722 aa11.39□□□□□ -0.59
LIMCH1-206ENST00000505705 PPIP5K1Q6PFW1 1433 aa11.38□□□□□ -0.59
LIMCH1-206ENST00000505705 DDX17Q92841 729 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-206ENST00000505705 XPCQ01831 940 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-206ENST00000505705 C1QBPQ07021 282 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-206ENST00000505705 HDGFL2Q7Z4V5 671 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-206ENST00000505705 SLC12A5Q9H2X9 1139 aa11.37□□□□□ -0.59
LIMCH1-206ENST00000505705 ATP7BP35670 1465 aa11.37□□□□□ -0.59
LIMCH1-206ENST00000505705 ACEP12821 1306 aa11.36□□□□□ -0.59
LIMCH1-206ENST00000505705 NPHP3Q7Z494 1330 aa11.36□□□□□ -0.59
LIMCH1-206ENST00000505705 PLEKHG3A1L390 1219 aa11.36□□□□□ -0.59
LIMCH1-206ENST00000505705 C11orf95C9JLR9 678 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-206ENST00000505705 PAK3O75914 559 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-206ENST00000505705 KRT28Q7Z3Y7 464 aa11.36□□□□□ -0.59
LIMCH1-206ENST00000505705 TERF2IPQ9NYB0 399 aa11.36□□□□□ -0.59
LIMCH1-206ENST00000505705 ROBO1Q9Y6N7 1651 aa11.36□□□□□ -0.59
LIMCH1-206ENST00000505705 LMOD2Q6P5Q4 547 aa11.35□□□□□ -0.59
LIMCH1-206ENST00000505705 ZNF692Q9BU19 519 aaPredicted RBP11.35□□□□□ -0.59
LIMCH1-206ENST00000505705 RGPD8O14715 1765 aaPredicted RBP11.35□□□□□ -0.59
LIMCH1-206ENST00000505705 KIF7Q2M1P5 1343 aa11.35□□□□□ -0.59
LIMCH1-206ENST00000505705 NINLQ9Y2I6 1382 aa11.34□□□□□ -0.59
LIMCH1-206ENST00000505705 ITSN1Q15811 1721 aa11.34□□□□□ -0.59
LIMCH1-206ENST00000505705 USP32Q8NFA0 1604 aa11.34□□□□□ -0.59
LIMCH1-206ENST00000505705 HSPA1LP34931 641 aa11.33□□□□□ -0.6
LIMCH1-206ENST00000505705 LRRC59Q96AG4 307 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-206ENST00000505705 KIF1AQ12756 1690 aa11.33□□□□□ -0.6
LIMCH1-206ENST00000505705 KTN1Q86UP2 1357 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-206ENST00000505705 ZNF316A6NFI3 1004 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-206ENST00000505705 PLEKHG5O94827 1062 aa11.32□□□□□ -0.6
LIMCH1-206ENST00000505705 WASHC2AQ641Q2 1341 aa11.32□□□□□ -0.6
LIMCH1-206ENST00000505705 CCDC7Q96M83 1385 aa11.31□□□□□ -0.6
LIMCH1-206ENST00000505705 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms